BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0025.p (321 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q6JJ73.1 Q6JJ73_BACST Catabolite control protein A 622 e-176 B3KIZ5.1 B3KIZ5_9BACI Catabolite control protein A EC=5.1.1.1 622 e-176 B1DHR1.1 B1DHR1_9BACL Global transcriptional regulator, cataboli... 545 e-153 Q5WEB2.1 Q5WEB2_BACSK Transcriptional regulator 431 e-119 Q9K7W7.1 Q9K7W7_BACHD Transcriptional regulator involved in carb... 431 e-119 >Q6JJ73.1 Q6JJ73_BACST Catabolite control protein A Length = 334 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 297/319 (93%), Positives = 309/319 (96%) Query: 1 MATVSRVVNNNPNVKPQTRKKVFEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF 60 MATVSRVVNNNPNVKPQTRKKV+EAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF Sbjct: 16 MATVSRVVNNNPNVKPQTRKKVYEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF 75 Query: 61 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTDEHIQAF 120 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVT+EHIQAF Sbjct: 76 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTEEHIQAF 135 Query: 121 QTSAVPIVLCATRDEQGTYPSVDIDHETAAFDAVNTLIRHGHREIAMISGTLQDPANGYA 180 QTSAVPIVLCAT DE G YPSVDIDHE AAFDAV+TL+RHGHREIAMISGT QDPANGYA Sbjct: 136 QTSAVPIVLCATSDENGQYPSVDIDHEAAAFDAVSTLVRHGHREIAMISGTFQDPANGYA 195 Query: 181 RFQGYKKALEAAGIEYQEDLVRIGNYRYESGVEAMKYFLGLKKKPTAVFAATDEMAIGAI 240 RFQGYK+ALE AGI+YQEDLVRIGNYRYESGVEAMKYFLGLKK+PTA+FAAT EMAIGAI Sbjct: 196 RFQGYKRALETAGIQYQEDLVRIGNYRYESGVEAMKYFLGLKKRPTAIFAATAEMAIGAI 255 Query: 241 HSIQDEGLKVPDDFSIISVDNIRMASMVRPLLTTVAQPMYDLGAVAMRLLTKLMKKETVE 300 HSIQDEGLKVPDDFSIISVD IRMASMVRP LTTVAQPMYDLGAVAMRLLT LMKKETVE Sbjct: 256 HSIQDEGLKVPDDFSIISVDGIRMASMVRPQLTTVAQPMYDLGAVAMRLLTNLMKKETVE 315 Query: 301 NPRVILPHETILRLSVNHV 319 NPRV+LPHETILR+SV+H+ Sbjct: 316 NPRVVLPHETILRVSVSHL 334 >B3KIZ5.1 B3KIZ5_9BACI Catabolite control protein A EC=5.1.1.1 Length = 336 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 302/321 (94%), Positives = 308/321 (95%) Query: 1 MATVSRVVNNNPNVKPQTRKKVFEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF 60 MATVSRVVNNNPNVKPQTRKKV+EAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF Sbjct: 16 MATVSRVVNNNPNVKPQTRKKVYEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF 75 Query: 61 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTDEHIQAF 120 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTDEHIQAF Sbjct: 76 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTDEHIQAF 135 Query: 121 QTSAVPIVLCATRDEQGTYPSVDIDHETAAFDAVNTLIRHGHREIAMISGTLQDPANGYA 180 QTSAVPIVLCAT DE+G+YPSVDIDHE AAFDAVNTLIRHGHREIAMISGTLQDPANGYA Sbjct: 136 QTSAVPIVLCATSDERGSYPSVDIDHEQAAFDAVNTLIRHGHREIAMISGTLQDPANGYA 195 Query: 181 RFQGYKKALEAAGIEYQEDLVRIGNYRYESGVEAMKYFLGLKKKPTAVFAATDEMAIGAI 240 RFQGYKKALEAAGIEYQEDLVR GVEAMKYFLGLKKKPTA+FAATDEMAIGAI Sbjct: 196 RFQGYKKALEAAGIEYQEDLVRXXXXXXXXGVEAMKYFLGLKKKPTAIFAATDEMAIGAI 255 Query: 241 HSIQDEGLKVPDDFSIISVDNIRMASMVRPLLTTVAQPMYDLGAVAMRLLTKLMKKETVE 300 HSIQDEG KVPDDFSIISVDNIRMASMVRP LTTVAQPMYDLGAVAMRLLTKLMKKE VE Sbjct: 256 HSIQDEGYKVPDDFSIISVDNIRMASMVRPQLTTVAQPMYDLGAVAMRLLTKLMKKENVE 315 Query: 301 NPRVILPHETILRLSVNHVNK 321 NPRVILPHETILRLSV+HVN+ Sbjct: 316 NPRVILPHETILRLSVSHVNE 336 >B1DHR1.1 B1DHR1_9BACL Global transcriptional regulator, catabolite control protein A EC=5.1.1.1 Length = 321 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 261/316 (82%), Positives = 286/316 (90%) Query: 1 MATVSRVVNNNPNVKPQTRKKVFEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF 60 MATVSRVVNNNPNVKP TRKKV+EAIERLGYRPNAVARGLASKKTTTVGVVIPDISN+ F Sbjct: 1 MATVSRVVNNNPNVKPATRKKVYEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNANF 60 Query: 61 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTDEHIQAF 120 AE+ARGIEDIANMYHYNIILCNADK+K+KEIRVINTLLEKQVDGLLFMGG VT+EH+QAF Sbjct: 61 AEVARGIEDIANMYHYNIILCNADKKKDKEIRVINTLLEKQVDGLLFMGGAVTEEHMQAF 120 Query: 121 QTSAVPIVLCATRDEQGTYPSVDIDHETAAFDAVNTLIRHGHREIAMISGTLQDPANGYA 180 +T+ VPIVLCAT DE G PSVDI+HE AA+DAV LI+ GH+ IAMISGTLQDPANGYA Sbjct: 121 KTANVPIVLCATTDENGQIPSVDINHEEAAYDAVCKLIQEGHKHIAMISGTLQDPANGYA 180 Query: 181 RFQGYKKALEAAGIEYQEDLVRIGNYRYESGVEAMKYFLGLKKKPTAVFAATDEMAIGAI 240 RFQGYK+ALE +GI Y E LVR GNYRYESGVEAMKYF+ L ++PTAVFAATDEMAIGAI Sbjct: 181 RFQGYKRALEDSGIPYDETLVRTGNYRYESGVEAMKYFIDLSERPTAVFAATDEMAIGAI 240 Query: 241 HSIQDEGLKVPDDFSIISVDNIRMASMVRPLLTTVAQPMYDLGAVAMRLLTKLMKKETVE 300 H IQD GLKVPDD S+ISVDN RMASMVRP LT VAQPMYD+GAV+MRLLTKLMKKE VE Sbjct: 241 HCIQDSGLKVPDDISVISVDNTRMASMVRPQLTAVAQPMYDIGAVSMRLLTKLMKKEVVE 300 Query: 301 NPRVILPHETILRLSV 316 + +VILPHE ++R SV Sbjct: 301 HAKVILPHEIVVRQSV 316 >Q5WEB2.1 Q5WEB2_BACSK Transcriptional regulator Length = 332 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 200/308 (64%), Positives = 249/308 (80%) Query: 1 MATVSRVVNNNPNVKPQTRKKVFEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF 60 MATVSRVVN NPNVKP TRKKV EAIERL YRPNAVARGLASK+TTTVGV+IPDIS+ F Sbjct: 16 MATVSRVVNGNPNVKPTTRKKVLEAIERLNYRPNAVARGLASKRTTTVGVIIPDISSIFF 75 Query: 61 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTDEHIQAF 120 +E+ARGIEDIA MY YNIILCN+D+ K+KEI +INTLLEKQVDG++FMGG +T+EH + F Sbjct: 76 SELARGIEDIATMYKYNIILCNSDQNKDKEIHLINTLLEKQVDGIVFMGGEITEEHAEQF 135 Query: 121 QTSAVPIVLCATRDEQGTYPSVDIDHETAAFDAVNTLIRHGHREIAMISGTLQDPANGYA 180 + + VPIVL AT D++ ++PSV+ID+ AA DA+ LI GH+ I M+SG+L+DP NGY Sbjct: 136 KRAPVPIVLAATLDDEKSFPSVNIDYTQAAEDAIQFLIEKGHKRIGMLSGSLEDPINGYQ 195 Query: 181 RFQGYKKALEAAGIEYQEDLVRIGNYRYESGVEAMKYFLGLKKKPTAVFAATDEMAIGAI 240 +F GY++AL+ IE+ E+L+ IG+Y Y+SG+EAM FL L +KPTA+FA+ DEMA+G I Sbjct: 196 KFAGYRQALQKNNIEFDENLIVIGDYTYDSGMEAMDAFLALDEKPTALFASNDEMALGVI 255 Query: 241 HSIQDEGLKVPDDFSIISVDNIRMASMVRPLLTTVAQPMYDLGAVAMRLLTKLMKKETVE 300 H IQD G VP D ++ DN R+A+MVRP LTTV QP+YD+GAV+MRLLTKLM KE V+ Sbjct: 256 HGIQDRGYDVPGDIEVLGFDNTRLATMVRPTLTTVVQPLYDIGAVSMRLLTKLMNKEEVD 315 Query: 301 NPRVILPH 308 N V LPH Sbjct: 316 NYTVTLPH 323 >Q9K7W7.1 Q9K7W7_BACHD Transcriptional regulator involved in carbon catabolite control Length = 333 Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/315 (64%), Positives = 247/315 (78%) Query: 1 MATVSRVVNNNPNVKPQTRKKVFEAIERLGYRPNAVARGLASKKTTTVGVVIPDISNSIF 60 MATVSRVVN NPNVKP TRKKV EAIERLGYRPNAVARGLASK+TTTVGVVIPDIS+ F Sbjct: 16 MATVSRVVNGNPNVKPATRKKVLEAIERLGYRPNAVARGLASKRTTTVGVVIPDISSIFF 75 Query: 61 AEIARGIEDIANMYHYNIILCNADKRKEKEIRVINTLLEKQVDGLLFMGGTVTDEHIQAF 120 AE+ARGIEDIA MY YNIILCN+D+ KEKEI +INTLLEKQVDG++FMGG +T+EH + F Sbjct: 76 AELARGIEDIATMYKYNIILCNSDQNKEKEIHLINTLLEKQVDGIVFMGGEITNEHAEEF 135 Query: 121 QTSAVPIVLCATRDEQGTYPSVDIDHETAAFDAVNTLIRHGHREIAMISGTLQDPANGYA 180 + + VP+VL AT D + PSV+ID++ AAFDAV LI GH I M+SG+L+DP NGY Sbjct: 136 KRAHVPVVLAATLDAEKEIPSVNIDYKQAAFDAVTYLIEKGHTSIGMVSGSLEDPVNGYQ 195 Query: 181 RFQGYKKALEAAGIEYQEDLVRIGNYRYESGVEAMKYFLGLKKKPTAVFAATDEMAIGAI 240 ++ GY++ALE G+ + E +V IG+Y Y+SG++AM F L+K+PTA+F ATDEMA+G I Sbjct: 196 KYAGYREALEERGVAFDESMVVIGDYTYDSGIDAMNVFTKLEKRPTAIFVATDEMALGVI 255 Query: 241 HSIQDEGLKVPDDFSIISVDNIRMASMVRPLLTTVAQPMYDLGAVAMRLLTKLMKKETVE 300 H QD GL +PDD +I DN R+A+MVRP L+TV QP+YD+GAV+MRLLTK M KE V Sbjct: 256 HGAQDHGLNIPDDIEVIGFDNTRLATMVRPTLSTVVQPIYDIGAVSMRLLTKYMNKEEVS 315 Query: 301 NPRVILPHETILRLS 315 V LPH R S Sbjct: 316 EHIVELPHRIEFRQS 330 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,770,794,690 Number of extensions: 69109267 Number of successful extensions: 220935 Number of sequences better than 1.0e-05: 9305 Number of HSP's gapped: 208107 Number of HSP's successfully gapped: 9312 Length of query: 321 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 186 Effective length of database: 1,788,859,178 Effective search space: 332727807108 Effective search space used: 332727807108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)