BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0019.p (152 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ00.1 B3KJ00_9BACI Ribosomal protein S4 269 5e-71 B1DHQ0.1 B1DHQ0_9BACL Ribosomal protein S4 256 4e-67 C0ZHK9.1 RS4_BREBN 30S ribosomal protein S4 198 1e-49 A8VWY3.1 A8VWY3_9BACI Ribosomal protein S4 195 9e-49 P59130.1 RS4_OCEIH 30S ribosomal protein S4 192 1e-47 >B3KJ00.1 B3KJ00_9BACI Ribosomal protein S4 Length = 200 Score = 269 bits (688), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 129/152 (84%), Positives = 141/152 (92%) Query: 1 MQLLEKQKLRHMYGLGEKQFRTLFSKAQKLQGIAGENFMFLLESRLDNLVYRLGFANSRA 60 MQL EKQKLRHMYGLGEKQFRTLF+KA ++GIAGENFMFLLESRLDNLVYRLGF+NSRA Sbjct: 49 MQLQEKQKLRHMYGLGEKQFRTLFNKATSMKGIAGENFMFLLESRLDNLVYRLGFSNSRA 108 Query: 61 GARQLVSHGHVTVNGKKVDIASYRVSVGDVIGLRERSRAMASIKEALENRSHLPGYLEYA 120 GARQLV+HGHVTVNGKKVDIASY VS GDVIGLRERSR+++SIKEAL NR HLP YLE+ Sbjct: 109 GARQLVAHGHVTVNGKKVDIASYAVSTGDVIGLRERSRSLSSIKEALANRVHLPAYLEFD 168 Query: 121 DGSFEGKYIRLPERAELSQDIDEKQIVEFYNR 152 + + EGKYIRLPER+ELSQDIDEKQIVEFYNR Sbjct: 169 EAAMEGKYIRLPERSELSQDIDEKQIVEFYNR 200 >B1DHQ0.1 B1DHQ0_9BACL Ribosomal protein S4 Length = 199 Score = 256 bits (655), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 124/152 (81%), Positives = 136/152 (89%) Query: 1 MQLLEKQKLRHMYGLGEKQFRTLFSKAQKLQGIAGENFMFLLESRLDNLVYRLGFANSRA 60 +QL EKQKLRHMYGL EKQFR LF KA KL+GI+GENFM LLESRLDNLV+RLGFANSRA Sbjct: 48 VQLQEKQKLRHMYGLNEKQFRNLFDKAAKLKGISGENFMVLLESRLDNLVFRLGFANSRA 107 Query: 61 GARQLVSHGHVTVNGKKVDIASYRVSVGDVIGLRERSRAMASIKEALENRSHLPGYLEYA 120 GARQLVSHGHVTVNGKKVDIASY VS GDVIGLRERSR + SIKEA+E R HLP Y+E+ Sbjct: 108 GARQLVSHGHVTVNGKKVDIASYTVSTGDVIGLRERSRGLKSIKEAIEGRHHLPNYIEFN 167 Query: 121 DGSFEGKYIRLPERAELSQDIDEKQIVEFYNR 152 D + EGKY+RLPERAELSQ+IDEKQIVEFY+R Sbjct: 168 DAAVEGKYVRLPERAELSQEIDEKQIVEFYSR 199 >C0ZHK9.1 RS4_BREBN 30S ribosomal protein S4 Length = 199 Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 94/152 (61%), Positives = 116/152 (76%) Query: 1 MQLLEKQKLRHMYGLGEKQFRTLFSKAQKLQGIAGENFMFLLESRLDNLVYRLGFANSRA 60 +QL EKQKLRHM+GL EKQFR F A K+ G+ GENFM LLESRLDNLVYR+GFA +R Sbjct: 48 IQLQEKQKLRHMFGLNEKQFRRTFDNASKMAGVVGENFMKLLESRLDNLVYRMGFAPTRP 107 Query: 61 GARQLVSHGHVTVNGKKVDIASYRVSVGDVIGLRERSRAMASIKEALENRSHLPGYLEYA 120 ARQLV+HGH VNGKKV+I SYRV GDVI +RE+SR + IK+ALE R+ LP Y+ + Sbjct: 108 AARQLVNHGHFLVNGKKVNIPSYRVQPGDVISIREKSRGLQLIKDALEGRTFLPNYVTFN 167 Query: 121 DGSFEGKYIRLPERAELSQDIDEKQIVEFYNR 152 D + EG + RLP+R E+ +I+E IVEFY+R Sbjct: 168 DAAAEGTFTRLPDREEMPAEINEVLIVEFYSR 199 >A8VWY3.1 A8VWY3_9BACI Ribosomal protein S4 Length = 200 Score = 195 bits (496), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 96/152 (63%), Positives = 116/152 (76%) Query: 1 MQLLEKQKLRHMYGLGEKQFRTLFSKAQKLQGIAGENFMFLLESRLDNLVYRLGFANSRA 60 +QL EKQKLRHMYG+ E+QF TLF A KLQGI GENFM LLESRLDNLVYRLG A +R Sbjct: 49 LQLQEKQKLRHMYGMNERQFNTLFEAAGKLQGIHGENFMILLESRLDNLVYRLGLARTRR 108 Query: 61 GARQLVSHGHVTVNGKKVDIASYRVSVGDVIGLRERSRAMASIKEALENRSHLPGYLEYA 120 ARQLV+HGHVTV+GK+VDI SYRV+ G I LRE+SR + +K A+E LP YLE+ Sbjct: 109 QARQLVNHGHVTVDGKRVDIPSYRVAPGQSISLREKSRNLDVVKSAIEMNDFLPSYLEFD 168 Query: 121 DGSFEGKYIRLPERAELSQDIDEKQIVEFYNR 152 EGK+ R PER+EL +I+E+ IVE+Y+R Sbjct: 169 AEKLEGKFARYPERSELPAEINEQLIVEWYSR 200 >P59130.1 RS4_OCEIH 30S ribosomal protein S4 Length = 200 Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 94/152 (61%), Positives = 115/152 (75%) Query: 1 MQLLEKQKLRHMYGLGEKQFRTLFSKAQKLQGIAGENFMFLLESRLDNLVYRLGFANSRA 60 +Q+ EKQKLR MYGL E+QFRTLF KA K++GI GENFM LLESRLDNLVYRLG A +R Sbjct: 49 LQMQEKQKLRFMYGLNERQFRTLFDKAGKMKGIHGENFMILLESRLDNLVYRLGLARTRR 108 Query: 61 GARQLVSHGHVTVNGKKVDIASYRVSVGDVIGLRERSRAMASIKEALENRSHLPGYLEYA 120 ARQLV+HGHVTV+G +VDI SY + G VIGLRE+S+ + +KEALE S +P Y + Sbjct: 109 QARQLVNHGHVTVDGGRVDIPSYAIKPGQVIGLREKSKNLDVVKEALEANSFVPEYTSFD 168 Query: 121 DGSFEGKYIRLPERAELSQDIDEKQIVEFYNR 152 EG Y R PER+EL +I+E+ IVEFY+R Sbjct: 169 ADKMEGSYTRFPERSELPAEINEQLIVEFYSR 200 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 829,598,855 Number of extensions: 30601068 Number of successful extensions: 94349 Number of sequences better than 1.0e-05: 5711 Number of HSP's gapped: 89616 Number of HSP's successfully gapped: 5711 Length of query: 152 Length of database: 3,060,696,203 Length adjustment: 114 Effective length of query: 38 Effective length of database: 1,986,700,493 Effective search space: 75494618734 Effective search space used: 75494618734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)