BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0013.p
         (81 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJ04.1 B3KJ04_9BACI Phosphocarrier HPr protein                      132   8e-30
B1DHP6.1 B1DHP6_9BACL Phosphotransferase system, phosphocarrier ...   124   3e-27

>B3KJ04.1 B3KJ04_9BACI Phosphocarrier HPr protein
          Length = 81

 Score =  132 bits (333), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 64/81 (79%), Positives = 74/81 (91%)

Query: 1  MSSNNAAIVDIAQTASKFNSSIVLQADNKYIDVKSILGLFTTLVSSQSYELHVHGADAEE 60
          MS+NN +IV+I+QTAS+F SSIVLQA+NKYIDVKSILGLFTTLV+SQSYELHVHG DA+E
Sbjct: 1  MSNNNQSIVEISQTASQFTSSIVLQAENKYIDVKSILGLFTTLVNSQSYELHVHGPDADE 60

Query: 61 AKKAMSEVFAKHGLKFTVVAE 81
          AKKAM +VF KHGL  +VVAE
Sbjct: 61 AKKAMIDVFTKHGLNVSVVAE 81


>B1DHP6.1 B1DHP6_9BACL Phosphotransferase system, phosphocarrier protein
          HPr
          Length = 80

 Score =  124 bits (310), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 68/79 (86%)

Query: 3  SNNAAIVDIAQTASKFNSSIVLQADNKYIDVKSILGLFTTLVSSQSYELHVHGADAEEAK 62
          SNNAAIV+I+Q AS+F SSIVLQADNKYIDVKSILGLFTTLV   +YELHVHG DAEEAK
Sbjct: 2  SNNAAIVEISQAASQFRSSIVLQADNKYIDVKSILGLFTTLVGGHAYELHVHGPDAEEAK 61

Query: 63 KAMSEVFAKHGLKFTVVAE 81
            M+E+FAKH L  +V++E
Sbjct: 62 AKMAEIFAKHNLNVSVISE 80


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.124    0.318 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 355,582,653
Number of extensions: 9745576
Number of successful extensions: 29090
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 29449
Number of HSP's successfully gapped: 2
Length of query: 81
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 30
Effective length of database: 2,580,224,438
Effective search space: 77406733140
Effective search space used: 77406733140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)