BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0012.p
         (101 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJ05.1 B3KJ05_9BACI Putative uncharacterized protein                166   6e-40
B1DHP5.1 B1DHP5_9BACL Putative uncharacterized protein                138   1e-31
Q5WFC9.1 Y2396_BACSK UPF0358 protein ABC2396                          111   2e-23
C5D858.1 C5D858_9BACI Putative uncharacterized protein                110   6e-23
Q2B4V6.1 Q2B4V6_9BACI Putative uncharacterized protein                109   8e-23

>B3KJ05.1 B3KJ05_9BACI Putative uncharacterized protein
          Length = 95

 Score =  166 bits (420), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/93 (83%), Positives = 89/93 (95%)

Query: 1  MTSSDLQEQLNLRAVTLLQEDADKIQKLIEVQMENLATRYCPLYEEVLDTQMYGFSREVD 60
          MTSSDLQEQLNL+A++LL EDADKI KLIEVQMENLATRYCPLYEEVLDTQMYGFS+EVD
Sbjct: 1  MTSSDLQEQLNLKAISLLHEDADKILKLIEVQMENLATRYCPLYEEVLDTQMYGFSKEVD 60

Query: 61 FAVRAGLVPEVSGKLILSELERNLAVLYEALNK 93
          FAVRAGL+PE +GK ++S+LERNLAVLYEA+N+
Sbjct: 61 FAVRAGLLPESTGKQLISKLERNLAVLYEAMNQ 93


>B1DHP5.1 B1DHP5_9BACL Putative uncharacterized protein
          Length = 95

 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/94 (73%), Positives = 79/94 (84%)

Query: 1  MTSSDLQEQLNLRAVTLLQEDADKIQKLIEVQMENLATRYCPLYEEVLDTQMYGFSREVD 60
          M+S ++  QL+ +A+ LL EDA KI+KLIEVQMENL TR CPLYEEVLDTQMYGFSRE+D
Sbjct: 1  MSSPEVTLQLHEKALRLLTEDASKIEKLIEVQMENLTTRQCPLYEEVLDTQMYGFSREID 60

Query: 61 FAVRAGLVPEVSGKLILSELERNLAVLYEALNKK 94
          FAVRAGL+ E SGK +LS LERNLA LYEALN K
Sbjct: 61 FAVRAGLIAEQSGKEMLSRLERNLAQLYEALNNK 94


>Q5WFC9.1 Y2396_BACSK UPF0358 protein ABC2396
          Length = 93

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/94 (61%), Positives = 73/94 (77%), Gaps = 1/94 (1%)

Query: 1  MTSSDLQEQLNLRAVTLLQEDADKIQKLIEVQMENLATRYCPLYEEVLDTQMYGFSREVD 60
          MT++ +  Q + +A  LLQ DA+KIQKLIEVQ+ENL    CPLYEEVLDT+M+G SRE+D
Sbjct: 1  MTTNAVTSQ-SEKAYALLQADAEKIQKLIEVQLENLTMPQCPLYEEVLDTRMFGLSREID 59

Query: 61 FAVRAGLVPEVSGKLILSELERNLAVLYEALNKK 94
          FA+R  LV E  GK+ILSELER LA+L+EA  +K
Sbjct: 60 FAIRLELVEEEKGKMILSELERKLALLHEASMRK 93


>C5D858.1 C5D858_9BACI Putative uncharacterized protein
          Length = 97

 Score =  110 bits (274), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 63/82 (76%)

Query: 13 RAVTLLQEDADKIQKLIEVQMENLATRYCPLYEEVLDTQMYGFSREVDFAVRAGLVPEVS 72
          +A  LLQ DADKI KLI+VQM+NL    CPLYEEVLDTQM+G SRE+DFAVR GLV E  
Sbjct: 13 KAYALLQADADKIVKLIQVQMDNLTMPKCPLYEEVLDTQMFGLSREIDFAVRLGLVDEKE 72

Query: 73 GKLILSELERNLAVLYEALNKK 94
          GK +L  LER L+ L+EA+ KK
Sbjct: 73 GKALLDRLERELSALHEAVTKK 94


>Q2B4V6.1 Q2B4V6_9BACI Putative uncharacterized protein
          Length = 94

 Score =  109 bits (272), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query: 13 RAVTLLQEDADKIQKLIEVQMENLATRYCPLYEEVLDTQMYGFSREVDFAVRAGLVPEVS 72
          RA  LL+ DADKI KLI+VQM+NL    CPLYEEVLDTQM+G SRE+DFAVR GL+ E +
Sbjct: 13 RANALLKADADKILKLIKVQMDNLTMPQCPLYEEVLDTQMFGLSREIDFAVRLGLIEEKT 72

Query: 73 GKLILSELERNLAVLYEA 90
          GK IL ELE+ L++L+EA
Sbjct: 73 GKAILGELEKELSILHEA 90


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.132    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 482,607,160
Number of extensions: 16251338
Number of successful extensions: 50208
Number of sequences better than 1.0e-05: 146
Number of HSP's gapped: 50208
Number of HSP's successfully gapped: 146
Length of query: 101
Length of database: 3,060,696,203
Length adjustment: 69
Effective length of query: 32
Effective length of database: 2,410,646,168
Effective search space: 77140677376
Effective search space used: 77140677376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)