BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0011.p
         (91 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJ06.1 B3KJ06_9BACI Sodium/calcium exchanger membrane region        118   1e-25
B1DHP4.1 B1DHP4_9BACL Calcium/proton antiporter, CaCA family          110   4e-23
C0ZBS2.1 C0ZBS2_BREBN Conserved hypothetical membrane protein          92   2e-17
B4VGV7.1 B4VGV7_9CYAN Calcium/proton exchanger                         83   1e-14
C2Q6X2.1 C2Q6X2_BACCE Calcium/proton antiporter                        81   4e-14

>B3KJ06.1 B3KJ06_9BACI Sodium/calcium exchanger membrane region
          Length = 225

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/91 (67%), Positives = 68/91 (74%)

Query: 1   MLAMKNKIGAAVEIAVGSSLQIALFVAPVLIFASYFMGNTMDXXXXXXXXXXXXXXXXXX 60
           MLAMKNKIGAAVEIAVGSSLQIALFVAPVL+F S+F+G+TMD                  
Sbjct: 135 MLAMKNKIGAAVEIAVGSSLQIALFVAPVLVFISFFLGDTMDLVFTTLELVAIGVAVFIA 194

Query: 61  XXXXQDGATNWYEGLLLLAVYMILGVSFYLV 91
               QDGA+NWYEGLLLLAVY+ILGVSF+LV
Sbjct: 195 RSITQDGASNWYEGLLLLAVYVILGVSFFLV 225


>B1DHP4.1 B1DHP4_9BACL Calcium/proton antiporter, CaCA family
          Length = 352

 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 63/91 (69%)

Query: 1   MLAMKNKIGAAVEIAVGSSLQIALFVAPVLIFASYFMGNTMDXXXXXXXXXXXXXXXXXX 60
           MLA+KNKIGAAVEIA+GSSLQIALFVAPVLI  S FMGNTMD                  
Sbjct: 262 MLALKNKIGAAVEIAIGSSLQIALFVAPVLILISAFMGNTMDIIFTPIELTAIGVSVFIA 321

Query: 61  XXXXQDGATNWYEGLLLLAVYMILGVSFYLV 91
               +DG TNWYEG LLL VY+ILGV+FYLV
Sbjct: 322 KSVSRDGTTNWYEGFLLLMVYVILGVAFYLV 352


>C0ZBS2.1 C0ZBS2_BREBN Conserved hypothetical membrane protein
          Length = 356

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 57/89 (64%)

Query: 1   MLAMKNKIGAAVEIAVGSSLQIALFVAPVLIFASYFMGNTMDXXXXXXXXXXXXXXXXXX 60
           +LA+K +IGAAVEIA+GSSLQIALFVAP L+  S  +GN MD                  
Sbjct: 266 LLALKGRIGAAVEIAIGSSLQIALFVAPTLVIMSLLLGNPMDIVFSTFELAAIGVATFIT 325

Query: 61  XXXXQDGATNWYEGLLLLAVYMILGVSFY 89
               +DGATNW+EG+LLL VY+ILG  F+
Sbjct: 326 ISITRDGATNWFEGVLLLTVYIILGTVFF 354


>B4VGV7.1 B4VGV7_9CYAN Calcium/proton exchanger
          Length = 372

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 55/88 (62%)

Query: 2   LAMKNKIGAAVEIAVGSSLQIALFVAPVLIFASYFMGNTMDXXXXXXXXXXXXXXXXXXX 61
           +AMKNK+  +V +AVGSSLQIALFVAPVL+ A +F+G  MD                   
Sbjct: 276 VAMKNKMDLSVSVAVGSSLQIALFVAPVLVIAGWFLGQPMDLDFNPFELVAVAVAVLIAN 335

Query: 62  XXXQDGATNWYEGLLLLAVYMILGVSFY 89
               DG +NW EG+LL+A Y++LG++FY
Sbjct: 336 SISSDGKSNWLEGILLIAAYLVLGLAFY 363


>C2Q6X2.1 C2Q6X2_BACCE Calcium/proton antiporter
          Length = 364

 Score = 80.9 bits (198), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 52/90 (57%)

Query: 1   MLAMKNKIGAAVEIAVGSSLQIALFVAPVLIFASYFMGNTMDXXXXXXXXXXXXXXXXXX 60
           ++A KNK+  AVEIAVGS+LQIA+FVAPVL+  S F  N M                   
Sbjct: 274 IMAYKNKVNIAVEIAVGSTLQIAMFVAPVLVLLSMFFANRMPLVFTIPELVSMITAVFLT 333

Query: 61  XXXXQDGATNWYEGLLLLAVYMILGVSFYL 90
                DG TNW+EG  LLA Y+I+G+ FYL
Sbjct: 334 IAISNDGDTNWFEGGTLLAAYVIMGIGFYL 363


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.140    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 354,988,409
Number of extensions: 7167266
Number of successful extensions: 22593
Number of sequences better than 1.0e-05: 339
Number of HSP's gapped: 22302
Number of HSP's successfully gapped: 339
Length of query: 91
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 31
Effective length of database: 2,495,435,303
Effective search space: 77358494393
Effective search space used: 77358494393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)