BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0008.p (414 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ09.1 B3KJ09_9BACI Cell division protein FtsW 442 e-122 B1DHP2.1 B1DHP2_9BACL Cell cycle protein 343 1e-92 Q894C0.1 Q894C0_CLOTE Stage V sporulation protein E 262 4e-68 C0ZBS7.1 C0ZBS7_BREBN Cell cycle protein 261 8e-68 B9E0W1.1 B9E0W1_CLOK1 Putative uncharacterized protein 252 5e-65 >B3KJ09.1 B3KJ09_9BACI Cell division protein FtsW Length = 405 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 227/392 (57%), Positives = 277/392 (70%), Gaps = 4/392 (1%) Query: 15 PKRGTPDFQXXXXXXXXXXXXXXMVFXXXXXLTLASEKFGNDPFYFVKRQIIWVVLGSFV 74 PKRGTPDFQ MVF L + +EKF NDP +F KRQ + VLG+FV Sbjct: 8 PKRGTPDFQLLILTLLLVGFGLIMVFSSSSSLAVFNEKFNNDPLHFTKRQAAFAVLGTFV 67 Query: 75 MFVTMNIHYSKFKKWYAPIFMITLVLLLFVAF-AERINGAKSWLNIGGLGIQPTEXXXXX 133 MFV MNI+Y K+KK + P+F +TL+LL+ V NGA SW N+G GIQPTE Sbjct: 68 MFVAMNINYKKYKKLFIPVFFLTLMLLILVVIIGSATNGATSWFNLGKFGIQPTELAKIA 127 Query: 134 XXXXXXXXXXXXGERLRDLRTGYIPVMVIVGIVAGLIMMQPDLGSCLILVATSGLVIYAG 193 GER+R + G+ PV++IVGIVAGLIM+QPDLGSC ILVATSGL+IYAG Sbjct: 128 TIVYLAALITKKGERIRQWKGGFFPVLIIVGIVAGLIMLQPDLGSCFILVATSGLLIYAG 187 Query: 194 GASMKHIMASIXXXXXXXXXXXXXXXXIDSLSPPSETAAVSKDYKKDRISAFINPEADPE 253 GAS+KHI+ I +S + SK+YK RI AF++P D Sbjct: 188 GASLKHILGCISLVALGLVLTLGVGSLFNS---GGDQEQASKNYKMGRIEAFMDPFHDES 244 Query: 254 DGGYNILQSLIALGEGGANGSGFGQSIQKLHYLPYPYTDFIFAVVGEELGFIGTSLFLLA 313 D GYN++QSLIA+G+GG G+G+G+S+QKLHYLP PY DFIF+V+GEE GFIGT++FLL Sbjct: 245 DTGYNLVQSLIAIGQGGVTGAGYGESVQKLHYLPNPYNDFIFSVIGEEFGFIGTAIFLLL 304 Query: 314 YLYLIWRGILIALRCTDPFGTLVGIGVMGLIAIQAFVNIGGVTNTIPLTGVTLPFISYGG 373 YLY I RGI+++LRC+DPFGTL G+G+MGLIAIQAF+NIGGVTNTIP+TGVTLPFISYGG Sbjct: 305 YLYFILRGIIVSLRCSDPFGTLTGVGIMGLIAIQAFINIGGVTNTIPITGVTLPFISYGG 364 Query: 374 SSLLVTMLSMGIMLSISRETNRPAKEEVTKSV 405 SSLLV MLSMGI+LSISR++NRP KEE KSV Sbjct: 365 SSLLVMMLSMGIVLSISRDSNRPMKEEQVKSV 396 >B1DHP2.1 B1DHP2_9BACL Cell cycle protein Length = 361 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 180/366 (49%), Positives = 237/366 (64%), Gaps = 9/366 (2%) Query: 38 MVFXXXXXLTLASEKFGNDPFYFVKRQIIWVVLGSFVMFVTMNIHYSKFKKWYAPIFMIT 97 MVF +TL S KF ND YF KRQ+IW VLG F M MN+ Y FKK + +F+ Sbjct: 1 MVFSASSNITLTSAKFHNDALYFTKRQLIWAVLGIFAMLFLMNLPYQIFKKGFIFLFIPV 60 Query: 98 LVLLLFVAFAERINGAKSWLNIGGLGIQPTEXXXXXXXXXXXXXXXXXGERLRDLRTGYI 157 +V+L+ V +NGA SW IG +GIQPTE GE+ RD + G + Sbjct: 61 IVMLMIVPTIGSLNGASSWFRIGTMGIQPTEMAKLAMILYIGALITKKGEKFRDFKKGLL 120 Query: 158 PVMVIVGIVAGLIMMQPDLGSCLILVATSGLVIYAGGASMKHIMASIXXXXXXXXXXXXX 217 PV++IVG + LIMMQPDLGSCL+L + +G++I AGGA++K + S Sbjct: 121 PVLIIVGFICFLIMMQPDLGSCLVLASCAGIMIIAGGANLKQVAVS----GGIIGIFAVL 176 Query: 218 XXXIDSLSPPSETAAVSKDYKKDRISAFINPEADPEDGGYNILQSLIALGEGGANGSGFG 277 I + P A Y+ R +A+ +P AD + G+ ++ SL ALG GG G+GFG Sbjct: 177 FAAIGMATNPDGWA-----YRIARFTAYSDPLADQQGSGFQLVSSLQALGHGGLTGAGFG 231 Query: 278 QSIQKLHYLPYPYTDFIFAVVGEELGFIGTSLFLLAYLYLIWRGILIALRCTDPFGTLVG 337 +S+QKLHYL YPY DFIF+V+ EELGFIG+SLFLL YL +WR +++ALRC D +GT+VG Sbjct: 232 ESVQKLHYLDYPYNDFIFSVIAEELGFIGSSLFLLFYLLFLWRALIVALRCPDHYGTIVG 291 Query: 338 IGVMGLIAIQAFVNIGGVTNTIPLTGVTLPFISYGGSSLLVTMLSMGIMLSISRETNRPA 397 +G++GL IQAFVN+GGVT IPLTGVTLPF+SYGGSSLLV ++ +G++LSISRE N+ Sbjct: 292 VGIVGLFGIQAFVNVGGVTGAIPLTGVTLPFVSYGGSSLLVCLMCIGVLLSISREANKQD 351 Query: 398 KEEVTK 403 K E K Sbjct: 352 KPERAK 357 >Q894C0.1 Q894C0_CLOTE Stage V sporulation protein E Length = 368 Score = 262 bits (670), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 141/390 (36%), Positives = 211/390 (54%), Gaps = 28/390 (7%) Query: 10 KNVSLPKRGTPDFQXXXXXXXXXXXXXXMVFXXXXXLTLASEKFGNDPFYFVKRQIIWVV 69 K + K G+ DF MV+ + D YF+KRQ +W + Sbjct: 2 KKLQDNKMGSIDFLMFCVIMLLVAIGVVMVYSASSYFAFYKHE---DSMYFLKRQGLWAI 58 Query: 70 LGSFVMFVTMNIHYSKFKKWYAPIFMITLVLLLFVAFAERINGAKSWLNIGGLGIQPTEX 129 LG F MF T+NI Y K+K+ + +IT VLLL V +NGA+ W+ +G QP+E Sbjct: 59 LGIFCMFATINIDYHKYKRHTKMLMLITTVLLLVVFAFTEVNGARRWIRLGPASFQPSEI 118 Query: 130 XXXXXXXXXXXXXXXXGERLRDLRTGYIPVMVIVGIVAGLIMMQPDLGSCLILVATSGLV 189 GER+R G IP +++ G AGL+ + +L +++ + ++ Sbjct: 119 AKYMVVIYLAKSIESKGERIRTFTYGVIPYLLVAGFYAGLVYAEKNLSIATVIMMVTFII 178 Query: 190 IYAGGASMKHIMASIXXXXXXXXXXXXXXXXIDSLSPPSETAAVSK----DYKKDRISAF 245 ++ GA H++A + P +A V+ ++ R+ +F Sbjct: 179 LFVAGARFSHLIAIVI---------------------PVISAGVAAILLTPFRLGRLLSF 217 Query: 246 INPEADPEDGGYNILQSLIALGEGGANGSGFGQSIQKLHYLPYPYTDFIFAVVGEELGFI 305 NP DP+ GY ++QS +ALG GG G G GQS QK +Y+P P+ DFIFAV+GEELG I Sbjct: 218 RNPWVDPKGKGYQLIQSFLALGSGGIWGVGLGQSRQKCYYIPEPHNDFIFAVIGEELGLI 277 Query: 306 GTSLFLLAYLYLIWRGILIALRCTDPFGTLVGIGVMGLIAIQAFVNIGGVTNTIPLTGVT 365 G + +L ++ WRGI+ A++ D FGTL IG+ +I +QA +NI VT +IP+TGV Sbjct: 278 GCTFIILLFVIFAWRGIVTAVKAKDTFGTLTAIGITSVIGVQALINIAVVTGSIPVTGVP 337 Query: 366 LPFISYGGSSLLVTMLSMGIMLSISRETNR 395 LPFISYGGSSL++ M++MGI+L+ISR+ + Sbjct: 338 LPFISYGGSSLVLNMMAMGILLNISRQKSN 367 >C0ZBS7.1 C0ZBS7_BREBN Cell cycle protein Length = 389 Score = 261 bits (667), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 160/401 (39%), Positives = 227/401 (56%), Gaps = 35/401 (8%) Query: 14 LPKRGTPDFQXXXXXXXXXXXXXXMVFXXXXXLTLAS------EKFGNDPFYFVKRQIIW 67 + RG PDF MV L S + G D YFVKRQ ++ Sbjct: 1 MKTRGVPDFLLLFLTALLVGFGITMVLSSSSIFALTSFTSGGCDYCGGDELYFVKRQSVF 60 Query: 68 VVLGSFVMFVTMNIHYSKFKKWYAPIFMIT---LVLLLFVAFAERINGAKSWLNIGGLGI 124 ++LG M V MNI +S +K+ + I +++ L+L+L + +NGA+SW IG I Sbjct: 61 LLLGVVGMLVAMNIPFSFYKRNFLLIALVSFFSLLLVLVPGIGKEVNGARSWFEIGSATI 120 Query: 125 QPTEXXXXXXXXXXXXXXXXXGERLRDLRTGYIPVMVIVGIVAGLIMMQPDLGSCLILVA 184 QP E G ++ L++G +P +++ G+ +I++QPDLGS IL+ Sbjct: 121 QPAEFAKLGLILYLAAIISKKGNGIQKLKSGLMPPLMVTGMFFMMIVVQPDLGSAAILLG 180 Query: 185 TSGLVIYAGGASMKHIMASIXXXXXXXXXXXXXXXXIDSLSPPSETAAV-----SKDYKK 239 + +V+ GGA ++ ++ L P+ T A+ +K + Sbjct: 181 CALIVMICGGAKIRQLVG---------------------LGAPAVTVALLVYITAKPHAL 219 Query: 240 DRISAFINPEADPEDGGYNILQSLIALGEGGANGSGFGQSIQKLHYLPYPYTDFIFAVVG 299 +RIS++++P +D GYNI+QS IA+ GG G+GFG+SIQK YLP +TDFIF+++ Sbjct: 220 NRISSYLDPWSDMSGTGYNIIQSWIAIAHGGLTGTGFGKSIQKYLYLPERHTDFIFSIMT 279 Query: 300 EELGFIGTSLFLLAYLYLIWRGILIALRCTDPFGTLVGIGVMGLIAIQAFVNIGGVTNTI 359 EELGFIG S+FLL +L + RGI I LR D F +L GIGV+ + AIQA +NIGGVT I Sbjct: 280 EELGFIGASVFLLIFLLFLLRGIHICLRVKDTFASLAGIGVVSMFAIQAILNIGGVTGLI 339 Query: 360 PLTGVTLPFISYGGSSLLVTMLSMGIMLSISRETNRPAKEE 400 PLTGV LPFISYGGSSLLV +L+ G +LSISRE +R EE Sbjct: 340 PLTGVPLPFISYGGSSLLVCLLATGFLLSISREVSRQKVEE 380 >B9E0W1.1 B9E0W1_CLOK1 Putative uncharacterized protein Length = 372 Score = 252 bits (643), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 131/346 (37%), Positives = 209/346 (60%), Gaps = 20/346 (5%) Query: 51 EKFGNDPFYFVKRQIIWVVLGSFVMFVTMNIHYSKFKKWYAPIFMITLVLLLFVAFA-ER 109 +K D YF+K+Q +W ++G+F MF T+ ++Y K +K Y I MI V+ L + FA E Sbjct: 43 DKSTQDSMYFLKKQGLWALIGTFFMFCTIKVNYKKIRK-YTKILMIICVVFLLIVFAFES 101 Query: 110 INGAKSWLNIGGLGIQPTEXXXXXXXXXXXXXXXXXGER-LRDLRTGYIPVMVIVGIVAG 168 NGA+ W+ +G +G QP+E G R + L G IP +++ G AG Sbjct: 102 TNGAQRWIRVGTVGFQPSELAKYIVVLYMARSIEVKGGRKIETLLYGVIPYLLVSGFYAG 161 Query: 169 LIMMQPDLGSCLILVATSGLVIYAGGASMKHIMASIXXXXXXXXXXXXXXXXIDSLSPPS 228 L+ + +L +++ + +++Y GA + H++ + Sbjct: 162 LVFAEKNLSIAAVIMIVTLIILYVSGAKIIHMLGVVGVVGLGGI---------------- 205 Query: 229 ETAAVSKDYKKDRISAFINPEADPEDGGYNILQSLIALGEGGANGSGFGQSIQKLHYLPY 288 + + Y+ R ++F+NP ADP+ GY ++QSL+ALG GG G G G+S QK +Y+P Sbjct: 206 -AGIIFEPYRMARFTSFLNPWADPKGSGYQLIQSLLALGSGGIWGMGLGKSRQKCYYIPE 264 Query: 289 PYTDFIFAVVGEELGFIGTSLFLLAYLYLIWRGILIALRCTDPFGTLVGIGVMGLIAIQA 348 P+TDFIF+++GEELG IG ++ ++ ++ L+WRGI+IA++ D +GTLV G+ +IA+QA Sbjct: 265 PHTDFIFSIIGEELGLIGCTVVVVLFVVLVWRGIVIAIKAKDTYGTLVATGITSVIAVQA 324 Query: 349 FVNIGGVTNTIPLTGVTLPFISYGGSSLLVTMLSMGIMLSISRETN 394 +NI VT +P+TGV LPFISYGGSSL++ M++MGI+L+ISR++ Sbjct: 325 IINIAVVTGAMPVTGVPLPFISYGGSSLVINMIAMGILLNISRQSK 370 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,122,992,057 Number of extensions: 81773535 Number of successful extensions: 216790 Number of sequences better than 1.0e-05: 3320 Number of HSP's gapped: 210475 Number of HSP's successfully gapped: 3928 Length of query: 414 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 276 Effective length of database: 1,760,596,133 Effective search space: 485924532708 Effective search space used: 485924532708 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)