BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0006.p
         (138 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJ10.1 B3KJ10_9BACI Putative uncharacterized protein                185   1e-45
B1DHP1.1 B1DHP1_9BACL Putative uncharacterized protein                167   2e-40
A8W1M5.1 A8W1M5_9BACI Ribosomal protein L36                            84   3e-15
C0ZBS8.1 C0ZBS8_BREBN Putative uncharacterized protein                 82   2e-14
Q8ER71.1 Q8ER71_OCEIH Hypothetical conserved protein                   73   1e-11

>B3KJ10.1 B3KJ10_9BACI Putative uncharacterized protein
          Length = 115

 Score =  185 bits (470), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 97/115 (84%)

Query: 24  MIFENTGLVGLTSDLLYLDESAAKAGFIRWQWEYYRATYDCKIEDRQNGGEYFLRINTRA 83
           MIFENTGL GL SDL YLDE A K GFIRWQWEYYRATYD KIED++N  EYFLRINTRA
Sbjct: 1   MIFENTGLDGLHSDLAYLDECAEKVGFIRWQWEYYRATYDLKIEDKKNQAEYFLRINTRA 60

Query: 84  VEGKLEKSDAVLAIEAVYLGKATFPHGLEYESPVPKPVLDDAAKHILELKALLEA 138
           VEGKLEK D +L IEAVYLGKATFPHGLEYES  P+PV++ A K + ELKALLEA
Sbjct: 61  VEGKLEKPDTILKIEAVYLGKATFPHGLEYESMAPQPVMNVATKKLQELKALLEA 115


>B1DHP1.1 B1DHP1_9BACL Putative uncharacterized protein
          Length = 114

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 92/113 (81%)

Query: 24  MIFENTGLVGLTSDLLYLDESAAKAGFIRWQWEYYRATYDCKIEDRQNGGEYFLRINTRA 83
           MI EN+GL GL SDL +LDESA + GF+RWQWEYYRATYD K+ED+    EYFLR+NTRA
Sbjct: 1   MIIENSGLNGLQSDLAHLDESAEQLGFVRWQWEYYRATYDLKLEDQATNSEYFLRVNTRA 60

Query: 84  VEGKLEKSDAVLAIEAVYLGKATFPHGLEYESPVPKPVLDDAAKHILELKALL 136
           VEGKLE  +AVLAIE VY+GK TFPHGLEYESPVP+P++  A + + +LK LL
Sbjct: 61  VEGKLENPNAVLAIEHVYIGKTTFPHGLEYESPVPQPIMAIANQRLEKLKQLL 113


>A8W1M5.1 A8W1M5_9BACI Ribosomal protein L36
          Length = 118

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 1/115 (0%)

Query: 24  MIFENTGLVGLTSDLLYLDESAAKAGFIRWQWEYYRATYDCKIEDRQNGGEYFLRINTRA 83
           M FE TGL G+      LDE+ ++ GF R  W+Y RATYD K+ D+     Y+LR+    
Sbjct: 1   MKFEQTGLEGIQIKFEDLDETMSECGFDR-AWDYERATYDYKMIDQVEDATYYLRMPCFV 59

Query: 84  VEGKLEKSDAVLAIEAVYLGKATFPHGLEYESPVPKPVLDDAAKHILELKALLEA 138
           +EG++ K+D  + +   Y+GK  +PHG+EY+   P+ ++D   K I  +   ++A
Sbjct: 60  IEGEIPKADTTVELMTPYVGKHYYPHGVEYDEDFPQKIVDKCHKKIGTVTEKIQA 114


>C0ZBS8.1 C0ZBS8_BREBN Putative uncharacterized protein
          Length = 114

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 2/102 (1%)

Query: 24  MIFENTGLVGLTSDLLYLDESAAKAGFIRWQWEYYRATYDCKIEDRQNGGEYFLRINTRA 83
           M+ ++TG+         L+   ++ GF R  W+Y  ATYD KI+D+  G  ++LRI    
Sbjct: 1   MVIKDTGIGTKEVFFADLEHYMSELGFDRGAWDYKHATYDYKIQDK--GNVFYLRIEANV 58

Query: 84  VEGKLEKSDAVLAIEAVYLGKATFPHGLEYESPVPKPVLDDA 125
            +GKLE + AVL +E  Y+GK  FPHGL+Y+ P+P  V+  A
Sbjct: 59  TQGKLEDTHAVLKLEDPYMGKHLFPHGLDYDYPMPDSVVKTA 100


>Q8ER71.1 Q8ER71_OCEIH Hypothetical conserved protein
          Length = 121

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 24  MIFENTGLVGLTSDLLYLDESAAKAGFIR-WQWEYYRATYDCKIEDRQNGGEYFLRINTR 82
           M  ENTG+     D+  LD   AK  FIR  QW+Y RATYD KI   +    Y++RI   
Sbjct: 1   MKLENTGIENTVIDIQSLDHITAKHAFIRAGQWDYERATYDYKIGSNEKNVTYYIRIMAH 60

Query: 83  AVEGKLEKSDAVLAIEAVYLGKATFPHGLEY 113
           + EG ++K  AV+ +    +GK  +PHG+EY
Sbjct: 61  SKEGDVDKRSAVVTLLPPLVGKHYYPHGVEY 91


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 849,616,238
Number of extensions: 32778804
Number of successful extensions: 59788
Number of sequences better than 1.0e-05: 99
Number of HSP's gapped: 59757
Number of HSP's successfully gapped: 99
Length of query: 138
Length of database: 3,060,696,203
Length adjustment: 102
Effective length of query: 36
Effective length of database: 2,099,752,673
Effective search space: 75591096228
Effective search space used: 75591096228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)