BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0004.p (575 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ13.1 B3KJ13_9BACI Type III restriction protein res subunit 617 e-174 C0ZGW2.1 C0ZGW2_BREBN Putative ATP-dependent helicase 550 e-154 B0SLN9.1 B0SLN9_LEPBP Putative DNA repair helicase 520 e-145 B0SDG7.1 B0SDG7_LEPBA DNA or RNA helicase of superfamily II 520 e-145 Q8F4B2.1 Q8F4B2_LEPIN DNA repair helicase 516 e-144 >B3KJ13.1 B3KJ13_9BACI Type III restriction protein res subunit Length = 595 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 315/558 (56%), Positives = 386/558 (69%), Gaps = 10/558 (1%) Query: 14 CIIRKDRTILLECGHPGFEAARTALADFAELVKSPPAYHTYRITQLSLWNAAAAGKTAQE 73 CI+++DRTILLE H EAAR LA +A+L+KSP ++HTYR+T LSLWNAAA G +A+ Sbjct: 6 CIVQRDRTILLETAHADAEAAREQLAQYADLIKSPASFHTYRLTPLSLWNAAAGGMSAEA 65 Query: 74 ILAVLSLLSRCGIPAGLEEEVRQLVSRYGRLELHSGADGGSLMVLRADNPVXXXXXXXXX 133 I + L LSR +PA L EEVRQLV RYG+L L ++L ++ Sbjct: 66 ICSSLQSLSRWDVPAALLEEVRQLVGRYGQLSLLPHPTLERALLLSSNEEALMQELTSHR 125 Query: 134 XXXXXXXNRTAPLECRCPAEQRGLLKQELARLGFPVLDYAGYRDGQALNVPWK-KAAGS- 191 +P E P+++RG+LKQE+ RLG+PVLD+AGY DGQ LN+ W+ + +GS Sbjct: 126 SLREIGIRLISPKEAEVPSDRRGVLKQEMTRLGYPVLDHAGYMDGQYLNILWRGEKSGSW 185 Query: 192 ------GAVYGESVGLRDYQEEAVRRFXXXXXXXXXXXXXLPCGAGKTLVGLAVLESLQC 245 G + LRDYQ++A F LPCGAGKT++G+A + LQC Sbjct: 186 RLEDSNGGSNDQRFVLRDYQQKAAESFRDIGGEGGNGVLVLPCGAGKTVIGIAAMRELQC 245 Query: 246 ETLILTSNATSVAQWKAELLKRTGLDEEAVGEYSGVKREVRPITVATYQILTHRRSKGGP 305 ETLILTSN TSV QW AEL+++T L + +GEYSG +++VRP+TVATY ILTHR+ KG Sbjct: 246 ETLILTSNTTSVRQWIAELMQKTTLSVDEIGEYSGQRKQVRPVTVATYHILTHRQGKGEE 305 Query: 306 FGHMNLFNERNWGLIIYDEVHLLPAPVFRATADIQATRRLGLXXXATLVREDGREDDVFS 365 HM LFNER WGLIIYDEVHLLPAPVFRATADIQATRRLGL ATLVREDGRE DVFS Sbjct: 306 QQHMKLFNERRWGLIIYDEVHLLPAPVFRATADIQATRRLGL--TATLVREDGRESDVFS 363 Query: 366 LIGPKCYELPWKVLEKQGWIAAVDCIEVVVPMGTDIRHRYMYAGAKEQFRVXXXXXXXXX 425 LIGPK YE+PWK LE QGWIA+V C E+ VP+ +IR A +EQ+R+ Sbjct: 364 LIGPKRYEMPWKRLEAQGWIASVTCTEIKVPLPDEIREACETANKREQYRLAAENPSKLD 423 Query: 426 XXXXXXXXXXXXXVLVIGQYLDQLKQLAVSLGAPLITGKTSQQERNELYAAFNEGAIRLL 485 L+IGQYLDQL ++ L APLITG+ +Q +RNE Y AF EG IR+L Sbjct: 424 VIRQLVDVHKDAQTLIIGQYLDQLHAISRELQAPLITGQMTQDQRNEWYNAFREGNIRVL 483 Query: 486 VVSKVANFAVNLPDASVAIEVSGAYGSRQEEAQRLGRILRPKPGENKAYFYTLVSGDSRE 545 VVSKVANFAV+LPDASVAIEVSG+YGSRQEEAQRLGR+LRPK GEN+AYFY LV+ DSRE Sbjct: 484 VVSKVANFAVDLPDASVAIEVSGSYGSRQEEAQRLGRLLRPKSGENRAYFYALVTEDSRE 543 Query: 546 QDFALRRRLFLTEQGYDY 563 + FA+RR+LFL EQGY+Y Sbjct: 544 EIFAIRRQLFLIEQGYEY 561 >C0ZGW2.1 C0ZGW2_BREBN Putative ATP-dependent helicase Length = 557 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 285/556 (51%), Positives = 365/556 (65%), Gaps = 15/556 (2%) Query: 15 IIRKDRTILLECGHPGFEAARTALADFAELVKSPPAYHTYRITQLSLWNAAAAGKTAQEI 74 I++ DRTILLE HP F AR A++ F EL+K+P HTYRIT LSLWNAAA+G T+QE+ Sbjct: 13 IVQSDRTILLETQHPFFHEARQAISGFTELIKNPEYIHTYRITPLSLWNAAASGLTSQEV 72 Query: 75 LAVLSLLSRCGIPAGLEEEVRQLVSRYGRLELHSGADGGSLMVLRADNPVXXXXXXXXXX 134 VL S+ G+P + +E+ + +YG L D +VL +++P+ Sbjct: 73 TDVLGNYSKYGVPPTIVKEIEDTMRKYGLFRLERIGDQ---LVLMSEDPLLLTEVTSYKS 129 Query: 135 XXXXXXNRTAPLECRCPAEQRGLLKQELARLGFPVLDYAGYRDGQALNVPWKKAAGSGAV 194 N E + RGL+KQEL +LGFPV D AGY +G++ V ++ G Sbjct: 130 IAALFEN-----EFVIKSYARGLIKQELIKLGFPVQDLAGYTEGESCAVSLRETTSRGRA 184 Query: 195 YGESVGLRDYQEEAVRRFXXXXXXXXXX-XXXLPCGAGKTLVGLAVLESLQCETLILTSN 253 + LR YQ+EAV F LPCGAGKT++GL + LQ TLILT+N Sbjct: 185 FS----LRSYQKEAVDAFYSGGAVTGGSGVLVLPCGAGKTIIGLGAICQLQTATLILTTN 240 Query: 254 ATSVAQWKAELLKRTGLDEEAVGEYSGVKREVRPITVATYQILTHRRSKGGPFGHMNLFN 313 TSV QW AELL +TGLD VGEY+G +EV+PITVATYQILT+R + F H+ LF+ Sbjct: 241 TTSVRQWIAELLDKTGLDPNMVGEYTGDNKEVKPITVATYQILTYRPTAEDDFPHLKLFS 300 Query: 314 ERNWGLIIYDEVHLLPAPVFRATADIQATRRLGLXXXATLVREDGREDDVFSLIGPKCYE 373 ER+WGLIIYDEVHLLPAP+FR T+ IQATRRLGL ATLVREDGRE+DVF+LIGPK YE Sbjct: 301 ERDWGLIIYDEVHLLPAPIFRVTSGIQATRRLGLT--ATLVREDGREEDVFTLIGPKKYE 358 Query: 374 LPWKVLEKQGWIAAVDCIEVVVPMGTDIRHRYMYAGAKEQFRVXXXXXXXXXXXXXXXXX 433 +PWKV+E+QGWIA C E+ +P R Y +A A+++FR+ Sbjct: 359 VPWKVMEEQGWIAEAHCREIRLPFEPKWREAYAHATARQKFRIAAENPKKLEVVRELLER 418 Query: 434 XXXXXVLVIGQYLDQLKQLAVSLGAPLITGKTSQQERNELYAAFNEGAIRLLVVSKVANF 493 VL+IGQY+DQL+Q+A +L PLITGK +ER LY F +G I L+VSKVANF Sbjct: 419 HAHDRVLIIGQYIDQLEQMATALQLPLITGKVPDKEREVLYTQFKKGEITRLIVSKVANF 478 Query: 494 AVNLPDASVAIEVSGAYGSRQEEAQRLGRILRPKPGENKAYFYTLVSGDSREQDFALRRR 553 AV+LPDA+VAI++SG YGSRQEEAQRLGRILRPK +N A+FYTLV+ D+REQ+F+L R+ Sbjct: 479 AVDLPDANVAIQISGTYGSRQEEAQRLGRILRPKTDDNTAHFYTLVTRDTREQEFSLHRQ 538 Query: 554 LFLTEQGYDYAVQTVQ 569 LFL EQGY Y + ++ Sbjct: 539 LFLVEQGYPYDIIEIE 554 >B0SLN9.1 B0SLN9_LEPBP Putative DNA repair helicase Length = 565 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 262/554 (47%), Positives = 356/554 (64%), Gaps = 10/554 (1%) Query: 16 IRKDRTILLECGHPGFEAARTALADFAELVKSPPAYHTYRITQLSLWNAAAAGKTAQEIL 75 ++ D+T+LLE +P FEA R +A FAEL KSP HTYRI+ LSLWNAA+ TA+EI+ Sbjct: 7 VQSDKTMLLEVDNPEFEACRDLVAKFAELEKSPEYMHTYRISPLSLWNAASIKMTAEEII 66 Query: 76 AVLSLLSRCGIPAGLEEEVRQLVSRYGRLELHSGADGGSLMVLRADNPVXXXXXXXXXXX 135 L+ +R +P + E+R+ +SRYG+++L + G L ++ N Sbjct: 67 EGLTKFARYSVPKNVMNEIREQISRYGKVKL-VKEESGELYII--SNEKGFITEIANNRA 123 Query: 136 XXXXXNRTAPLECRCPAEQRGLLKQELARLGFPVLDYAGYRDGQALNVPWKKAAGSGAVY 195 + + R E RG +KQ L ++GFPV D AGY +G + G + Sbjct: 124 VQPFVDGMEGDKIRIKKEYRGHIKQALIKIGFPVEDLAGYDEGNKYPFNLRPTTKGGIKF 183 Query: 196 GESVGLRDYQEEAVRRFXXXXXXXXXX-XXXLPCGAGKTLVGLAVLESLQCETLILTSNA 254 G +RDYQ +V F LPCGAGKT+VG+ V++ + ETLIL +N Sbjct: 184 G----MRDYQRASVEAFHAGGRNEGGSGVVVLPCGAGKTIVGMGVMQIVGAETLILVTNT 239 Query: 255 TSVAQWKAELLKRTGLDEEAVGEYSGVKREVRPITVATYQILTHRRSKGGPFGHMNLFNE 314 S+ QW+ E+L +T + E +GEYSG +E++PIT+ATY ILTHR+ KGG F H ++F+ Sbjct: 240 LSIRQWRNEILDKTDIPESDIGEYSGEMKEIKPITIATYNILTHRKKKGGDFTHFHIFSA 299 Query: 315 RNWGLIIYDEVHLLPAPVFRATADIQATRRLGLXXXATLVREDGREDDVFSLIGPKCYEL 374 NWGLI+YDEVHLLPAPVFR T+++QA RRLGL ATLVREDG E+DVFSLIGPK Y++ Sbjct: 300 NNWGLIVYDEVHLLPAPVFRMTSELQAKRRLGL--TATLVREDGLEEDVFSLIGPKKYDV 357 Query: 375 PWKVLEKQGWIAAVDCIEVVVPMGTDIRHRYMYAGAKEQFRVXXXXXXXXXXXXXXXXXX 434 PWK LE + WIA +C+E+ VPM D+R +Y A +E+FR+ Sbjct: 358 PWKELEAKSWIAEANCVEIRVPMEDDLRMKYSVADDREKFRLASENPEKLRAISYILKKH 417 Query: 435 XXXXVLVIGQYLDQLKQLAVSLGAPLITGKTSQQERNELYAAFNEGAIRLLVVSKVANFA 494 +LVIGQY++QL++++ + PLITGKT ER ELY AF G I+ LVVSKVANF+ Sbjct: 418 STNNILVIGQYINQLEEISNTFKIPLITGKTPLPERQELYQAFRTGQIKQLVVSKVANFS 477 Query: 495 VNLPDASVAIEVSGAYGSRQEEAQRLGRILRPKPGENKAYFYTLVSGDSREQDFALRRRL 554 ++LPDA++AI+VSG +GSRQEEAQRLGRILRPK +N A FY+L+S D+ E+ F R+L Sbjct: 478 IDLPDANIAIQVSGTFGSRQEEAQRLGRILRPKAQDNTAIFYSLISRDTNEERFGQNRQL 537 Query: 555 FLTEQGYDYAVQTV 568 FLTEQGY+Y + T+ Sbjct: 538 FLTEQGYEYEIYTL 551 >B0SDG7.1 B0SDG7_LEPBA DNA or RNA helicase of superfamily II Length = 565 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 262/554 (47%), Positives = 356/554 (64%), Gaps = 10/554 (1%) Query: 16 IRKDRTILLECGHPGFEAARTALADFAELVKSPPAYHTYRITQLSLWNAAAAGKTAQEIL 75 ++ D+T+LLE +P FEA R +A FAEL KSP HTYRI+ LSLWNAA+ TA+EI+ Sbjct: 7 VQSDKTMLLEVDNPEFEACRDLVAKFAELEKSPEYMHTYRISPLSLWNAASIKMTAEEII 66 Query: 76 AVLSLLSRCGIPAGLEEEVRQLVSRYGRLELHSGADGGSLMVLRADNPVXXXXXXXXXXX 135 L+ +R +P + E+R+ +SRYG+++L + G L ++ N Sbjct: 67 EGLTKFARYSVPKNVMNEIREQISRYGKVKL-VKEESGELYII--SNEKGFITEIANNRA 123 Query: 136 XXXXXNRTAPLECRCPAEQRGLLKQELARLGFPVLDYAGYRDGQALNVPWKKAAGSGAVY 195 + + R E RG +KQ L ++GFPV D AGY +G + G + Sbjct: 124 VQPFVDGMEGDKIRIKKEYRGHIKQALIKIGFPVEDLAGYDEGNKYPFNLRPTTKGGIKF 183 Query: 196 GESVGLRDYQEEAVRRFXXXXXXXXXX-XXXLPCGAGKTLVGLAVLESLQCETLILTSNA 254 G +RDYQ +V F LPCGAGKT+VG+ V++ + ETLIL +N Sbjct: 184 G----MRDYQRASVEAFHAGGRNEGGSGVVVLPCGAGKTIVGMGVMQIVGAETLILVTNT 239 Query: 255 TSVAQWKAELLKRTGLDEEAVGEYSGVKREVRPITVATYQILTHRRSKGGPFGHMNLFNE 314 S+ QW+ E+L +T + E +GEYSG +E++PIT+ATY ILTHR+ KGG F H ++F+ Sbjct: 240 LSIRQWRNEILDKTDIPESDIGEYSGEMKEIKPITIATYNILTHRKKKGGDFTHFHIFSA 299 Query: 315 RNWGLIIYDEVHLLPAPVFRATADIQATRRLGLXXXATLVREDGREDDVFSLIGPKCYEL 374 NWGLI+YDEVHLLPAPVFR T+++QA RRLGL ATLVREDG E+DVFSLIGPK Y++ Sbjct: 300 NNWGLIVYDEVHLLPAPVFRMTSELQAKRRLGL--TATLVREDGLEEDVFSLIGPKKYDV 357 Query: 375 PWKVLEKQGWIAAVDCIEVVVPMGTDIRHRYMYAGAKEQFRVXXXXXXXXXXXXXXXXXX 434 PWK LE + WIA +C+E+ VPM D+R +Y A +E+FR+ Sbjct: 358 PWKELEAKSWIAEANCVEIRVPMEDDLRMKYSVADDREKFRLASENPEKLRAISYILKKH 417 Query: 435 XXXXVLVIGQYLDQLKQLAVSLGAPLITGKTSQQERNELYAAFNEGAIRLLVVSKVANFA 494 +LVIGQY++QL++++ + PLITGKT ER ELY AF G I+ LVVSKVANF+ Sbjct: 418 STNNILVIGQYINQLEEISNTFKIPLITGKTPLPERQELYQAFRTGQIKQLVVSKVANFS 477 Query: 495 VNLPDASVAIEVSGAYGSRQEEAQRLGRILRPKPGENKAYFYTLVSGDSREQDFALRRRL 554 ++LPDA++AI+VSG +GSRQEEAQRLGRILRPK +N A FY+L+S D+ E+ F R+L Sbjct: 478 IDLPDANIAIQVSGTFGSRQEEAQRLGRILRPKAQDNTAIFYSLISRDTNEERFGQNRQL 537 Query: 555 FLTEQGYDYAVQTV 568 FLTEQGY+Y + T+ Sbjct: 538 FLTEQGYEYEIYTL 551 >Q8F4B2.1 Q8F4B2_LEPIN DNA repair helicase Length = 569 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 265/555 (47%), Positives = 351/555 (63%), Gaps = 10/555 (1%) Query: 15 IIRKDRTILLECGHPGFEAARTALADFAELVKSPPAYHTYRITQLSLWNAAAAGKTAQEI 74 I++ DRT+LLE +P FEA ++ ++ FAEL KSP HTYRI+ LSLWNAA+ +A EI Sbjct: 6 IVQSDRTMLLEVDNPEFEACQSVVSKFAELEKSPEYLHTYRISPLSLWNAASIKMSADEI 65 Query: 75 LAVLSLLSRCGIPAGLEEEVRQLVSRYGRLELHSGADGGSLMVLRADNPVXXXXXXXXXX 134 + L SR +P + E+R+ +SRYG+++L + G L +L N Sbjct: 66 VECLEKFSRYSVPKNIVNEIREQISRYGKVKL-VKEESGELAIL--SNEKGFLQEIGNHR 122 Query: 135 XXXXXXNRTAPLECRCPAEQRGLLKQELARLGFPVLDYAGYRDGQALNVPWKKAAGSGAV 194 T P + E RG +KQ L ++GFPV D AGY +G + + SG Sbjct: 123 AVQPFIESTFPDKIYIKKEYRGHIKQALIKIGFPVEDLAGYDEGNKYGFNLRPTSISGKK 182 Query: 195 YGESVGLRDYQEEAVRRFXXXXXXXXXXXXX-LPCGAGKTLVGLAVLESLQCETLILTSN 253 +G +RDYQ V F LPCGAGKT+VG+ V++ + ETLIL +N Sbjct: 183 FG----MRDYQRACVEVFHAGGGNEGGSGVVVLPCGAGKTIVGIGVMQIVGAETLILVTN 238 Query: 254 ATSVAQWKAELLKRTGLDEEAVGEYSGVKREVRPITVATYQILTHRRSKGGPFGHMNLFN 313 S+ QW+ E+L +T + E +GEYSG +E+RPIT+ATY ILTHR+ KGG F H +LF Sbjct: 239 TLSIRQWRNEILDKTDIPPEDIGEYSGEVKEIRPITIATYNILTHRKKKGGDFTHFHLFG 298 Query: 314 ERNWGLIIYDEVHLLPAPVFRATADIQATRRLGLXXXATLVREDGREDDVFSLIGPKCYE 373 NWGLI+YDEVHLLPAPVFR T+++QA RRLGL ATLVREDG E+DVFSLIGPK Y+ Sbjct: 299 ANNWGLIVYDEVHLLPAPVFRMTSELQAKRRLGL--TATLVREDGLEEDVFSLIGPKKYD 356 Query: 374 LPWKVLEKQGWIAAVDCIEVVVPMGTDIRHRYMYAGAKEQFRVXXXXXXXXXXXXXXXXX 433 +PWK LE + WIA C E+ V M D+R +Y A +E+FR+ Sbjct: 357 VPWKELESKSWIAEAKCKEIRVNMEDDLRLKYSIADDREKFRLASENPEKMKAIGLIMKK 416 Query: 434 XXXXXVLVIGQYLDQLKQLAVSLGAPLITGKTSQQERNELYAAFNEGAIRLLVVSKVANF 493 +LVIGQY++QL++++ PLITGKT ER LY AF G I+ LVVSKVANF Sbjct: 417 HSESHLLVIGQYINQLEEISKKFNIPLITGKTPLPERQTLYDAFRSGKIKSLVVSKVANF 476 Query: 494 AVNLPDASVAIEVSGAYGSRQEEAQRLGRILRPKPGENKAYFYTLVSGDSREQDFALRRR 553 +++LPDA++AI+VSG +GSRQEEAQRLGRILRPK +N A FY+L+S D+ E+ F R+ Sbjct: 477 SIDLPDANIAIQVSGTFGSRQEEAQRLGRILRPKGHDNTAVFYSLISRDTNEERFGQNRQ 536 Query: 554 LFLTEQGYDYAVQTV 568 LFLTEQGY+Y + T+ Sbjct: 537 LFLTEQGYEYEIYTL 551 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,037,224,048 Number of extensions: 115211581 Number of successful extensions: 264142 Number of sequences better than 1.0e-05: 430 Number of HSP's gapped: 262686 Number of HSP's successfully gapped: 567 Length of query: 575 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 434 Effective length of database: 1,732,333,088 Effective search space: 751832560192 Effective search space used: 751832560192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)