BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0003.p (517 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ15.1 B3KJ15_9BACI Putative uncharacterized protein 137 2e-30 A9U6V7.1 A9U6V7_PHYPA Predicted protein (Fragment) 107 4e-21 Q2RH72.1 Q2RH72_MOOTA Putative uncharacterized protein 68 3e-09 B1DHN7.1 B1DHN7_9BACL Putative uncharacterized protein 62 2e-07 >B3KJ15.1 B3KJ15_9BACI Putative uncharacterized protein Length = 356 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 105/382 (27%), Positives = 161/382 (42%), Gaps = 88/382 (23%) Query: 128 LEASARIWLTGLAGFGWCELGSTEDGAVCFRWTAARPQLPPNGAAAFSSRSIEVQEAGDV 187 L A WL L G G+ +LG+ +DG FRW A L Sbjct: 62 LPEEAASWLRLLTGCGYTDLGADDDGQFLFRWRVAPSSL--------------------- 100 Query: 188 TEGSLGQEDLSQQDEIRQAADSPGFIVQPDFEVLVPAECPYSHRWLLAGCAELQHSDDLW 247 +GS G + S G +QPDF++L+P P S ++ A E D + Sbjct: 101 LDGSEGAD-----------TGSSGLFIQPDFDILIPPNVPNSVKFQAACYTERILDDVMT 149 Query: 248 SYRLTREKLESAAEQGMSPEAVISWLAAHARGGLPAQVELSLRQWGKGIGRTELAEAILL 307 YRLTR+ + AA+ GM P+ + ++ + HA G+P V+ +L QWGK Sbjct: 150 VYRLTRDSVIQAAKAGMEPDRIAAFFSKHAAAGMPENVQSALYQWGK------------- 196 Query: 308 ACRSEADGNDIAAHPRLSGLLARIGPLHFIVRSDDVEAVRKELGAAGMAPPKRIAGQEAQ 367 E D + PR EA +E +AG + Sbjct: 197 ----EMDRAGLNESPRYE------------------EAFPEE--------DTELAGTDGN 226 Query: 368 PGREWPLVNGSRTGDIAVYALPVHGQATGLFAFPAVQPLIPLNLHATEEAVLSGLAAVPQ 427 +P+ GSR+ P + L P + +++ L +P Sbjct: 227 --DRYPMQWGSRSRPSCGLIRPARSELV----------LEPDDTLPDPSSIIPDLNRIPV 274 Query: 428 MWIKQWRKYHATTAQKVMEQAVEWGVKVRLSMEGEVCEFIPARISRNPWEVQGALLLTKP 487 MW + WR YH +TA+++MEQA+E K+ ++++G EFIP +I R PW++ GAL Sbjct: 275 MWTRDWRSYHGSTAKQMMEQALELSAKLEIAVDGSRMEFIPFQILRQPWKISGALYDPDS 334 Query: 488 DRVQE-VRLNAADWQEMQLMIP 508 D+ V L +W+EM+L+IP Sbjct: 335 DKTGAIVELGEGEWREMRLVIP 356 >A9U6V7.1 A9U6V7_PHYPA Predicted protein (Fragment) Length = 589 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 93/189 (49%), Gaps = 33/189 (17%) Query: 51 LLETERLESWMHLSGKQMSSLLYGLVLSRYGQPDPAGQHFRYLVSSADYPTEMWFALRDI 110 LLE E+L W+ LS ++M+ +L VL RYG PA QHFRYL+ + +W+ + + Sbjct: 433 LLEEEQLGEWLGLSEQEMNRVLLPAVLDRYGMSRPALQHFRYLLCHPSFQPGVWYDMTKM 492 Query: 111 LERMLGAGLAQDHDTAALEASARIWLTGLAGFGWCELGSTEDGAVCFRWTAARPQLPPNG 170 L+ M L + EA AR W+T +AGFGW + G G CFRW A P Sbjct: 493 LDWMEREVLLT---RSVSEAGARAWMTAMAGFGWGDTGEDGSGRCCFRW-AMDP------ 542 Query: 171 AAAFSSRSIEVQEAGDVTEGSLGQEDLSQQDEIRQAADSPGFIVQPDFEVLVPAECPYSH 230 AF S G ED R+ A+ F VQPDF+V+VP + PY Sbjct: 543 --AFVLVS--------------GGED-------REMAEEGRFYVQPDFDVIVPPDVPYRI 579 Query: 231 RWLLAGCAE 239 RW L C+E Sbjct: 580 RWKLLACSE 588 >Q2RH72.1 Q2RH72_MOOTA Putative uncharacterized protein Length = 557 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 2/157 (1%) Query: 208 DSPGFIVQPDFEVLVPAECPYSHRWLLAGCAELQHSDDLWSYRLTREKLESAAEQGMSPE 267 ++ FIVQP+FEV+ P E + L+ +L +D ++ + L + +G PE Sbjct: 370 EASSFIVQPNFEVIAPMELSPNLFMQLSTFTDLVSADRMFIFSLNEKAFYRGFTRGRQPE 429 Query: 268 AVISWLAAHARGGLPAQVELSLRQWGKGIGRTELAEAILLACRSEADGNDIAAHPRLSG- 326 ++ +L H++ LP V ++ +W +G+ L + +L+ C+ E + A G Sbjct: 430 EMLKFLQEHSKYELPPNVLTTVEEWAAKMGKVSLVKGVLVRCQKEELAEQVKALLEARGW 489 Query: 327 LLARIGPLHFIVRSDDVEAVRKELGAAGMAP-PKRIA 362 L+ I P F+V + E + L G P P+ IA Sbjct: 490 LIEAITPQVFLVPENRGEECLELLEKQGFMPHPQLIA 526 >B1DHN7.1 B1DHN7_9BACL Putative uncharacterized protein Length = 570 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 4/95 (4%) Query: 416 EAVLSGLAAVPQMWIKQWRKYHATTAQKVMEQAVEWGVKVRLSMEGEVCEFIPARISR-- 473 E L L VP W++Q R YH +T +++E+A+ W V+L ++ V F+PAR+ R Sbjct: 472 ERFLPELERVPINWMQQLRSYHHSTRFEILERALSWQAPVQLRIKENVVAFVPARLERSG 531 Query: 474 NPWEVQGALLLTKPDRVQEVRLNAADWQEMQLMIP 508 N W V G LL + D +EV L+ W+ M+L+ P Sbjct: 532 NGWTVTG--LLREADTHREVCLSPEMWEGMKLVAP 564 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 99/242 (40%), Gaps = 47/242 (19%) Query: 57 LESWMHLSGKQMSSLLYGLVLSRYGQPDPAGQHFRYLVSSADYPTEMWF---ALRDILER 113 L +W SLL+ L+ + PA H L++ + T W+ A+ D L Sbjct: 224 LAAWFSKGELTRESLLFQWCLNELLEKKPAMWHVMALLTRLEPGT--WYPDGAIADQLPE 281 Query: 114 MLGAGLAQDHDTAALEASARIWLTGLAGFGWCELGSTEDGAVCFRWTAARPQLPPNGAAA 173 + G+ D +A L L FGW EL D + RWT +P Sbjct: 282 LDLKGMEWDQSRSAC-------LNLLRSFGWLELAWAGDSKM-LRWT----MIP------ 323 Query: 174 FSSRSIEVQEAGDVTEGSLGQEDLSQQDEIRQAADSPGFIVQPDFEVLVPAECPYSHRWL 233 L +E R +A +++P+ ++LVP CPYS RW Sbjct: 324 -----------------------LFIYNEQRPSARPEPIMIEPNGDLLVPPGCPYSIRWE 360 Query: 234 LAGCAELQHSDDLWSYRLTREKLESAAEQGMSPEAVISWLAAHARGGLPAQ-VELSLRQW 292 L A+ + D L ++L+R +E A G +VI++L + + G L + +E SL W Sbjct: 361 LELVADRKSDDQLSVWQLSRSSIERAITHGRCVASVIAFLQSASGGMLISSLLETSLTDW 420 Query: 293 GK 294 GK Sbjct: 421 GK 422 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,095,687,692 Number of extensions: 127187056 Number of successful extensions: 294998 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 295007 Number of HSP's successfully gapped: 7 Length of query: 517 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 377 Effective length of database: 1,741,754,103 Effective search space: 656641296831 Effective search space used: 656641296831 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)