BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0002.p
         (146 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJ16.1 B3KJ16_9BACI Putative uncharacterized protein                215   9e-55
B1DHN6.1 B1DHN6_9BACL Putative uncharacterized protein                147   2e-34
C0ZBV0.1 C0ZBV0_BREBN Regulatory protein YlbF                         113   6e-24
Q5WFE4.1 Q5WFE4_BACSK Putative uncharacterized protein                 92   1e-17
B7GGK7.1 B7GGK7_ANOFW Regulatory protein involved in competence ...    88   3e-16

>B3KJ16.1 B3KJ16_9BACI Putative uncharacterized protein
          Length = 145

 Score =  215 bits (548), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 100/129 (77%), Positives = 114/129 (88%)

Query: 1   MSVAELNTVDMAEVLTYAYELGDMINQSAEVSDYLYWKGRVDANPEVQAMIKRLQGKKEL 60
           MSV+E+NTVDMAEVLTYAYE+GDMIN S EV+DYLYWK  V+ +P +QA++++L  KKEL
Sbjct: 1   MSVSEINTVDMAEVLTYAYEIGDMINASVEVADYLYWKQAVENDPMIQALVRKLDSKKEL 60

Query: 61  FEETQRFGHFHPNYHAAKDEVTAVEQELERFEEVARFKQAEKTLDDMLHSMSETIAFSVS 120
           FEETQRFGHFHPNYH+AKDEV AVE ELE FE VARFKQAEK LDD+LHSMSE IAFSVS
Sbjct: 61  FEETQRFGHFHPNYHSAKDEVAAVEAELEAFEPVARFKQAEKNLDDLLHSMSERIAFSVS 120

Query: 121 DSIKVPSND 129
           +SIKVP ND
Sbjct: 121 ESIKVPGND 129


>B1DHN6.1 B1DHN6_9BACL Putative uncharacterized protein
          Length = 158

 Score =  147 bits (372), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 93/124 (75%)

Query: 6   LNTVDMAEVLTYAYELGDMINQSAEVSDYLYWKGRVDANPEVQAMIKRLQGKKELFEETQ 65
           ++++DMA +L  AYELGD INQSAEV+DYLYWK  V  +  V+ + K+    KELF E +
Sbjct: 15  VSSLDMASLLMCAYELGDFINQSAEVADYLYWKEAVQEDERVKLLSKQFAKAKELFSECE 74

Query: 66  RFGHFHPNYHAAKDEVTAVEQELERFEEVARFKQAEKTLDDMLHSMSETIAFSVSDSIKV 125
           RFG FHP+YHAAKD+V  +E+EL++ E V RFK AE+ +D ML+ +S  IA SVSD+IKV
Sbjct: 75  RFGRFHPDYHAAKDKVKQIERELDQIEAVKRFKTAEQLVDTMLYDVSRMIAESVSDTIKV 134

Query: 126 PSND 129
           PSN+
Sbjct: 135 PSNE 138


>C0ZBV0.1 C0ZBV0_BREBN Regulatory protein YlbF
          Length = 151

 Score =  113 bits (282), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/124 (45%), Positives = 87/124 (70%)

Query: 6   LNTVDMAEVLTYAYELGDMINQSAEVSDYLYWKGRVDANPEVQAMIKRLQGKKELFEETQ 65
           L  VDM +++  ++EL  MINQS EVS+YL  K +++A+ EVQ ++   + KKE +E+ Q
Sbjct: 4   LEAVDMTQLIMGSHELSTMINQSREVSEYLEAKRQMEADEEVQRLLVVFEAKKEQYEDVQ 63

Query: 66  RFGHFHPNYHAAKDEVTAVEQELERFEEVARFKQAEKTLDDMLHSMSETIAFSVSDSIKV 125
           RFG +HP+Y+    EV  +++ +E  + V  FK+AE  LD++L+ +S TIA SVS++IKV
Sbjct: 64  RFGKYHPDYNHISKEVRELKRNIELRDSVQAFKRAEDALDELLYQVSRTIAHSVSETIKV 123

Query: 126 PSND 129
           PSN+
Sbjct: 124 PSNN 127


>Q5WFE4.1 Q5WFE4_BACSK Putative uncharacterized protein
          Length = 146

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 77/124 (62%)

Query: 6   LNTVDMAEVLTYAYELGDMINQSAEVSDYLYWKGRVDANPEVQAMIKRLQGKKELFEETQ 65
           + T+D  ++L  + EL  M+ QS+  ++Y   + R + N   QA ++R +  K+  EE Q
Sbjct: 2   IATIDAMDMLQASDELAAMVLQSSVFANYRLSRARFEENRAAQAKVERFKKVKQAHEEVQ 61

Query: 66  RFGHFHPNYHAAKDEVTAVEQELERFEEVARFKQAEKTLDDMLHSMSETIAFSVSDSIKV 125
           RFG +HP+Y +   E+   ++EL++ E ++ FKQAE  L+ +L+ +S  IA SVS SIKV
Sbjct: 62  RFGKYHPDYKSVSAEIRIAKRELDKDEVISAFKQAETELESLLNELSTIIAHSVSSSIKV 121

Query: 126 PSND 129
           P+ +
Sbjct: 122 PTGN 125


>B7GGK7.1 B7GGK7_ANOFW Regulatory protein involved in competence development
           and sporulation
          Length = 164

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 72/122 (59%)

Query: 8   TVDMAEVLTYAYELGDMINQSAEVSDYLYWKGRVDANPEVQAMIKRLQGKKELFEETQRF 67
           T++  ++L +A ELG MI QS    +Y      +  + + Q +I+R    KE +EE QRF
Sbjct: 20  TIERLQLLDFAEELGKMIVQSDVAEEYRRCFYHMQQDEKAQQLIRRFVQLKERYEEVQRF 79

Query: 68  GHFHPNYHAAKDEVTAVEQELERFEEVARFKQAEKTLDDMLHSMSETIAFSVSDSIKVPS 127
           G +HPNY     +V   ++EL+ +  +A FKQAEK +  +L  +S  I  +VS++IKVP+
Sbjct: 80  GKYHPNYKEVTKQVREAKRELDLYGPIAAFKQAEKNMQSLLDEISTMIGRAVSENIKVPT 139

Query: 128 ND 129
            +
Sbjct: 140 GN 141


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.128    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 665,179,728
Number of extensions: 22983347
Number of successful extensions: 91799
Number of sequences better than 1.0e-05: 139
Number of HSP's gapped: 91907
Number of HSP's successfully gapped: 139
Length of query: 146
Length of database: 3,060,696,203
Length adjustment: 109
Effective length of query: 37
Effective length of database: 2,033,805,568
Effective search space: 75250806016
Effective search space used: 75250806016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)