BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0545.0067.p
         (70 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KF36.1 B3KF36_9BACI Helix-turn-helix-domain containing protein...    65   2e-09

>B3KF36.1 B3KF36_9BACI Helix-turn-helix-domain containing protein AraC type
          Length = 260

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 7   VKLIFQTVTRNWRTKEIMDDIREFSHVWMGKQPFYRMKARAVFQLIVYRLLSIAHHQ 63
           ++L F  VT+   TKEI+  IREF+ VWM KQPFY + ARA+F+LI++RLL   H Q
Sbjct: 96  IRLPFGVVTKKLITKEILSYIREFNLVWMNKQPFYMIHARALFELILHRLLRCMHRQ 152


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 378,379,753
Number of extensions: 10321595
Number of successful extensions: 26706
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 26706
Number of HSP's successfully gapped: 1
Length of query: 70
Length of database: 3,060,696,203
Length adjustment: 41
Effective length of query: 29
Effective length of database: 2,674,434,588
Effective search space: 77558603052
Effective search space used: 77558603052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 126 (53.1 bits)