BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0062.p (173 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K630.1 B3K630_9BACI Putative uncharacterized protein 262 7e-69 B4AIC3.1 B4AIC3_BACPU Putative uncharacterized protein 203 5e-51 B1HQ41.1 B1HQ41_LYSSC Putative uncharacterized protein 199 1e-49 C0Z7E6.1 C0Z7E6_BREBN Putative uncharacterized protein 198 2e-49 A6CJQ1.1 A6CJQ1_9BACI Putative uncharacterized protein 197 2e-49 >B3K630.1 B3K630_9BACI Putative uncharacterized protein Length = 168 Score = 262 bits (670), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 122/167 (73%), Positives = 139/167 (83%) Query: 3 GILGGNAKDEPMHYGEIYNVWQASMVAKGAISYYRAFLNHAGDHDLKKILSALIDQAELE 62 GIL GN K+EPMHYGEI++VW ASM+AKG +S Y A+LNHAGD DLKKIL L+DQA+LE Sbjct: 2 GILSGNPKNEPMHYGEIFSVWSASMLAKGMVSCYEAYLNHAGDKDLKKILHDLLDQAKLE 61 Query: 63 VSECDKLLTDNGIGTAPALPDRPQAKLEDIPVGARFTDPEIAAKIAADVATSLVACSQAM 122 + ECD+LLTDNGI AP LP+RP KLEDIP GARFTDPEIAAKIAAD + LV+CSQ M Sbjct: 62 IKECDELLTDNGIPPAPGLPERPSVKLEDIPAGARFTDPEIAAKIAADTSLGLVSCSQIM 121 Query: 123 GQSIREDVGALFGKYHMTNAALGVKILNMLKEKGWLIPPPLQVKRQE 169 GQSIRED+GALF KYH+ A GV+IL M KEKGWLIPPPLQ+KR E Sbjct: 122 GQSIREDIGALFAKYHLAKTAQGVRILQMNKEKGWLIPPPLQIKRPE 168 >B4AIC3.1 B4AIC3_BACPU Putative uncharacterized protein Length = 170 Score = 203 bits (517), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 91/167 (54%), Positives = 120/167 (71%) Query: 3 GILGGNAKDEPMHYGEIYNVWQASMVAKGAISYYRAFLNHAGDHDLKKILSALIDQAELE 62 GIL GN DEPMHYGE++ W MVAK ++ Y+ LNHAGD DL+K++ I A+ E Sbjct: 2 GILSGNPTDEPMHYGEVFGTWSYLMVAKSLVAGYQTHLNHAGDEDLQKLIEEAIQGAQQE 61 Query: 63 VSECDKLLTDNGIGTAPALPDRPQAKLEDIPVGARFTDPEIAAKIAADVATSLVACSQAM 122 + E + LL +NGIG P P+RP+A ++DIPVGARF DPEIAA ++A++A+ LV+CS M Sbjct: 62 IKEIETLLKENGIGLPPTPPERPKACIDDIPVGARFQDPEIAAGLSANIASGLVSCSTIM 121 Query: 123 GQSIREDVGALFGKYHMTNAALGVKILNMLKEKGWLIPPPLQVKRQE 169 GQSIRED+ +FG++H AA G K+L + KEKGWLIPPPL + E Sbjct: 122 GQSIREDIAMMFGQFHTQKAAFGAKVLRLNKEKGWLIPPPLHHSKAE 168 >B1HQ41.1 B1HQ41_LYSSC Putative uncharacterized protein Length = 169 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 88/167 (52%), Positives = 118/167 (70%) Query: 3 GILGGNAKDEPMHYGEIYNVWQASMVAKGAISYYRAFLNHAGDHDLKKILSALIDQAELE 62 GILGGN KDEP+HYGE+++VW + G IS Y+ F NHAGD DLKKI+ +I+ E Sbjct: 2 GILGGNPKDEPLHYGEVFSVWSNLIADYGMISGYQTFYNHAGDEDLKKIIEDIIETCRDE 61 Query: 63 VSECDKLLTDNGIGTAPALPDRPQAKLEDIPVGARFTDPEIAAKIAADVATSLVACSQAM 122 V + +K+L NG+ PA P+RP A++EDIP GA+F DPEI+A ++ D+A LVACSQAM Sbjct: 62 VKQLEKILKTNGVALPPASPERPVARMEDIPAGAKFNDPEISAALSVDLAAGLVACSQAM 121 Query: 123 GQSIREDVGALFGKYHMTNAALGVKILNMLKEKGWLIPPPLQVKRQE 169 G S RED+ ++G++H A +G K+L + K KGWL+PPPL V E Sbjct: 122 GTSTREDIALMYGQFHTAKALIGAKLLRLNKNKGWLVPPPLHVNYPE 168 >C0Z7E6.1 C0Z7E6_BREBN Putative uncharacterized protein Length = 172 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 91/171 (53%), Positives = 116/171 (67%) Query: 3 GILGGNAKDEPMHYGEIYNVWQASMVAKGAISYYRAFLNHAGDHDLKKILSALIDQAELE 62 GIL GN ++EPMHYGE+ VW KG ++ Y+ LNH GDHDLK L + + E Sbjct: 2 GILSGNPQNEPMHYGEVSGVWMYLSTTKGLLAGYQTALNHTGDHDLKGFLEDITRSMKQE 61 Query: 63 VSECDKLLTDNGIGTAPALPDRPQAKLEDIPVGARFTDPEIAAKIAADVATSLVACSQAM 122 V + D+LL NGIG P PDRP A LE IP GAR DPEIAA ++ D+A LVACSQ M Sbjct: 62 VEQLDELLKVNGIGLPPTPPDRPVANLESIPAGARMNDPEIAAGVSRDIAAGLVACSQIM 121 Query: 123 GQSIREDVGALFGKYHMTNAALGVKILNMLKEKGWLIPPPLQVKRQETVNA 173 QSIRED+G LFG+YH+ A G+++L + K+KGWL+PPPL ++ E V+A Sbjct: 122 AQSIREDIGMLFGQYHVAKAQFGLRLLRISKKKGWLVPPPLHIQTPELVHA 172 >A6CJQ1.1 A6CJQ1_9BACI Putative uncharacterized protein Length = 178 Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 87/167 (52%), Positives = 115/167 (68%) Query: 3 GILGGNAKDEPMHYGEIYNVWQASMVAKGAISYYRAFLNHAGDHDLKKILSALIDQAELE 62 GIL GN K+EPMHYGE++ W M KG ++ Y+ NHAGD DL K + LI E Sbjct: 10 GILSGNPKEEPMHYGEVFGTWSFLMAGKGMVAGYQTLKNHAGDEDLNKFIDELIQNGLQE 69 Query: 63 VSECDKLLTDNGIGTAPALPDRPQAKLEDIPVGARFTDPEIAAKIAADVATSLVACSQAM 122 + + ++LL +NG+G P P+RP A +EDIPVGAR+ DPEI+A + D+A LVACSQ + Sbjct: 70 IKQLEELLKENGVGLPPTPPERPNACIEDIPVGARYQDPEISASLTRDIAGGLVACSQVI 129 Query: 123 GQSIREDVGALFGKYHMTNAALGVKILNMLKEKGWLIPPPLQVKRQE 169 GQ +RED+ +FG++HM AALG K+L + KEKGWLIPPPL + E Sbjct: 130 GQCVREDIALMFGQFHMQKAALGGKLLRLNKEKGWLIPPPLHQHKNE 176 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,026,752,524 Number of extensions: 38178083 Number of successful extensions: 114344 Number of sequences better than 1.0e-05: 84 Number of HSP's gapped: 114280 Number of HSP's successfully gapped: 84 Length of query: 173 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 47 Effective length of database: 1,873,648,313 Effective search space: 88061470711 Effective search space used: 88061470711 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)