BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0061.p (408 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2QTM7.1 C2QTM7_BACCE Putative uncharacterized protein 267 1e-69 B1DB53.1 B1DB53_9BACL Putative uncharacterized protein 258 5e-67 B1DMI8.1 B1DMI8_9BACL Putative uncharacterized protein 237 1e-60 C1F5I1.1 C1F5I1_ACIC5 BNR/Asp-box repeat protein 111 2e-22 A1SQD6.1 A1SQD6_NOCSJ Putative uncharacterized protein 77 4e-12 >C2QTM7.1 C2QTM7_BACCE Putative uncharacterized protein Length = 435 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 165/405 (40%), Positives = 232/405 (57%), Gaps = 20/405 (4%) Query: 13 EPSIAVSTLNPNIMCVVAVEDSTGTALTGFYRSIDGGATWSTTVLPQAPGYMSAEAPTID 72 EPS+AV+ NPN + + G + TG YRS D G TW+ +LP G+ A ++ Sbjct: 17 EPSVAVNLSNPNTIIATGNDFRLGDSRTGLYRSTDKGKTWTNIILPLPAGFTVAADAVVN 76 Query: 73 YTFPDTFIVAVHYFN----EFMDGTIATYTSFDNGVTFNPPVIVQRGFGLYVHNDEPFIA 128 + ++F+V+ FN + +DGTI Y S +NG TF+ P+IV +G G+ HND+ + A Sbjct: 77 WGDNNSFLVSALVFNRNGNQGVDGTIVVYRSTNNGQTFSTPIIVNQGNGIAEHNDKNYSA 136 Query: 129 VDRSPSSPYRGNAYVGYTPIYDLSQNSAIFFQRSLDEGITWERPLRIS---DPRGELDRA 185 +D S SP++G+AYV YT + + NS I F RS + G+ W P+ I+ + + Sbjct: 137 IDTSSKSPFKGHAYVSYTQFTN-NVNSQILFNRSTNGGLNWSAPIAITGVITGNTFVQGS 195 Query: 186 ALAVGLAGELYVGFIQTRS-DLPTNAYVRV--SLDGGVSFNPPVTRGATFIASTXXXXXX 242 + VG GE+YV +I+ + +L NA+ R+ S DGGV+F P +T + Sbjct: 196 NITVGPNGEVYVAWIERQQFNLGNNAFFRIRRSNDGGVTFGPIITVSQ---VTALPSNLN 252 Query: 243 XXXXNYAFRVQTNLSLGTDISAGQFGGFVYAVWNDFRLGYADVFFSRSPDGLLWSTPVTI 302 N+ FR TN L D+S G G VYAVWND+ G A + S S +G WSTPV + Sbjct: 253 SNVINWQFRTPTNAFLAVDLSKGHNKGRVYAVWNDYSTGNAQILSSHSDNGANWSTPVRV 312 Query: 303 TGA-PAGSQNFSPSITVSPSNGTVRVIYYTNRVNGFL-LDVFVAESFNAGVSFA-NRRIS 359 PA +QNF P V PS+G V+V+YYTNRV+G LDVF++ES N G SF+ ++R++ Sbjct: 313 NSENPANTQNFLPFPVVDPSSGKVKVVYYTNRVSGATNLDVFLSESSNGGNSFSKHKRVT 372 Query: 360 DVSTNPNGNSPTPVPLIGDYITAATKFPDTLAAVWNDSRLGKQDI 404 D S NPN +P IGDYI AAT D L VW D+R G QDI Sbjct: 373 DQSFNPNIGNPN---FIGDYIFAATLPHDELVTVWTDTRTGNQDI 414 >B1DB53.1 B1DB53_9BACL Putative uncharacterized protein Length = 411 Score = 258 bits (660), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 161/404 (39%), Positives = 227/404 (56%), Gaps = 14/404 (3%) Query: 9 GNHIEPSIAVSTLNPNIMCVVAVEDSTGTALTGFYRSIDGGATWSTTVLPQAPGYMSAEA 68 G EPSIA++TL+ + V + +G +T YRSI+ G +++ T+L PG+ ++ Sbjct: 10 GPQQEPSIALNTLDQTTIVVTTNDLRSGNNMTTIYRSINAGVSYAQTLLAPPPGFDASGD 69 Query: 69 PTIDYTFPDTFIVAVHYF--NEFMDGTIATYTSFDNGVTFNPPVIVQRGFGLYVHNDEPF 126 + + TF+VA N + +I Y S DNG TF+PPVIV +GFG V+ND+P Sbjct: 70 GVAAFGYAQTFLVAATALTVNPVQNSSIIVYRSTDNGATFSPPVIVNQGFGTAVYNDKPA 129 Query: 127 IAVDRSPSSPYRGNAYVGYTPIYDLSQNSAIFFQRSLDEGITWERPLRISDPRGELDR-- 184 + +D + SP+ G AYV YT ++ S FQRSLD+G+TW P+ +++ + Sbjct: 130 LTIDTANGSPFLGQAYVAYTRYFNNFTQSETLFQRSLDQGLTWSPPILLTNQVQGVTSFG 189 Query: 185 AALAVGLAGELYVGFIQTRSDLPTNAYVRVSLDGGVSFNPPVTRGATFIASTXXXXXXXX 244 + +A+G G++YVG++Q P +R SLDGGV+F P VT +++ Sbjct: 190 STIAIGPQGDVYVGWMQYGPGTP-QYLMRRSLDGGVTFGPIVT-----VSTVSLVPTPLP 243 Query: 245 XXNYAFRVQTNLSLGTDISAGQFGGFVYAVWNDFRLGYADVFFSRSPD-GLLWSTPVTIT 303 + FRV T + TDIS G VYAVW D R G A +F SRS D G WS P I Sbjct: 244 VPTFGFRVLTIAYMATDISPFNGQGIVYAVWQDNRTGSAHIFMSRSTDRGNTWSAPKQID 303 Query: 304 GAPAGSQNFSPSITVSPSNGTVRVIYYTNRVNGFLLDVFVAESFNAGVSFA-NRRISDVS 362 +PAG+QNF P+ TVS G + +YYTNRV L+DVF+AES +AG +F NRRI+ VS Sbjct: 304 DSPAGTQNFLPNATVSRDTGAFKAMYYTNRVTSNLIDVFLAESNDAGNTFLPNRRITSVS 363 Query: 363 TNPNGNSP--TPVPLIGDYITAATKFPDTLAAVWNDSRLGKQDI 404 +PN + P P IGDY T VW D+R G Q+I Sbjct: 364 FDPNADPSLGLPTPSIGDYNDLEINAAGTTFVVWMDTRTGSQNI 407 >B1DMI8.1 B1DMI8_9BACL Putative uncharacterized protein Length = 413 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 155/404 (38%), Positives = 225/404 (55%), Gaps = 19/404 (4%) Query: 13 EPSIAVSTLNPNIMCVVAVEDSTGTALTGFYRSIDGGATW-STTVLPQAPGYMSAEAPTI 71 EPSI +++LN + V + +TGT+ Y S DGG T+ S+ LP G+ + Sbjct: 15 EPSITINSLNNLTVIVTSSSIATGTSRINVYVSQDGGFTYPSSMTLPLPSGFTTQGNAVG 74 Query: 72 DYTFPDTFIVAVHYFN--EFMDGTIATYTSFDNGVTFNPPVIVQRGFGLYVHNDEPFIAV 129 Y + + F++ N D +I+ YTS DNGVTF+ PVI GF + ++ND+P+I + Sbjct: 75 AYGYRNNFMITCTQLNIGPVRDSSISVYTSTDNGVTFSGPVITCEGFDVQIYNDKPWIHI 134 Query: 130 DRSPSSPYRGNAYVGYTPIYDLSQNSAIFFQRSLDEGITWERPLRISDPR-GELDRAA-L 187 D S SPY G ++ +T YD +SA +QRSLD G TW P+ +++ G + Sbjct: 135 DNSNGSPYVGIVHIAFTRYYDNFASSAQLYQRSLDNGQTWSIPILLTNQTVGSAGFGTNV 194 Query: 188 AVGLAGELYVGFIQTRSDLPTNA--YVRVSLDGGVSFNPPVTRGATFIASTXXXXXXXXX 245 AVG G++YV + Q P N+ +R S DGG++FNP V +++ Sbjct: 195 AVGPTGQVYVAWAQYS---PGNSQFLLRRSDDGGLTFNPTVN-----VSNISLVPSPLPV 246 Query: 246 XNYAFRVQTNLSLGTDISAGQFGGFVYAVWNDFRLGYADVFFSRSPD-GLLWSTPVTITG 304 +AFRV T+ L D+S Q G VYAVW D+R GY+ ++ SRS D G WS P+ + Sbjct: 247 TTWAFRVLTSAFLAVDLSPNQGQGIVYAVWQDYRTGYSHIYLSRSTDQGNSWSVPIQVDD 306 Query: 305 APAGSQNFSPSITVSPSNGTVRVIYYTNRVNGFLLDVFVAESFNAGVSFA-NRRISDVST 363 +P +QNF P+I+VS + G ++++YYTNRVN LLDV+ S NAG SFA N R+S S Sbjct: 307 SPLETQNFYPNISVSRTTGLIQIVYYTNRVNSSLLDVYGTTSGNAGASFAVNTRLSAASF 366 Query: 364 NPNGNSPTPVPL--IGDYITAATKFPDTLAAVWNDSRLGKQDII 405 +PN + VP +GDYI + +PD VW Q+II Sbjct: 367 DPNADPSYGVPCRSLGDYIDVSFSYPDRPTTVWTGMINNVQNII 410 >C1F5I1.1 C1F5I1_ACIC5 BNR/Asp-box repeat protein Length = 440 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 117/379 (30%), Positives = 163/379 (43%), Gaps = 50/379 (13%) Query: 1 VNITAALPGNHIEPSIAVSTLNPNIMCVVAVEDSTGTALTGFYRSIDGGATW---STTVL 57 +NIT PG EP +AV+ NP VV ++ + A T DGG TW ST V Sbjct: 35 INITPT-PGTFTEPGVAVNPNNPK-QVVVVLQYTAKAAYTE-----DGGQTWHLDSTGVA 87 Query: 58 P---QAPGYMSAEAPTIDYTFPDTFIV-AVHYFNEFMDGT----IATYTSFDNGVTFNPP 109 P + G +S + D + FN + G I S D G T+ Sbjct: 88 PLNYRMSGDVSVAFDNKGHAIMDCIAFDKLGSFNYWGHGATRNGIFQRRSLDGGKTWETQ 147 Query: 110 VIVQRGFGLYV---HNDEPFIAVDRSPSSPYRGNAYVGYTPIYDLSQNSAIFFQRSLDEG 166 + F D+P+I D SP SP+ GN YVG+T + L+ +S + F RS D+G Sbjct: 148 LRTVSAFPTKPGIPFEDKPYIVADDSPQSPHAGNLYVGWT-RWTLT-DSRMLFSRSTDDG 205 Query: 167 ITWERPLRISDPRG--ELDRAALA-----VGLAGELYVGFIQTRSDLPTNAYVRVSLDGG 219 + W +P+ IS RG D AL VG G LY G ++ + S DGG Sbjct: 206 VKWSKPIEISQTRGLPRDDNGALEGFDGVVGPKGTLY-GVWSADDEI----VLTESHDGG 260 Query: 220 VSFNPPVTRGATFIASTXXXXXXXXXXNYAFRVQTNLSLGTDISAGQFGGFVYAVWNDFR 279 +F P +R A T +A + I+ G +Y W+D+R Sbjct: 261 KTFTP--SRNIVHTAPTM----------FAVDGMDRANGFPQIADDPKNGELYVTWSDYR 308 Query: 280 LGYADVFFSRSPD-GLLWSTPVTITGAPA--GSQNFSPSITVSPSNGTVRVIYYTNRVNG 336 G D+F SRS D G WS PV + P G+ +F + V P G V V++Y R N Sbjct: 309 NGDVDIFLSRSTDHGATWSAPVKVNNDPKHDGADHFFQWLAVDPVTGAVNVVFYDRRENP 368 Query: 337 FLLDVFVAESFNAGVSFAN 355 V +A S + G +F N Sbjct: 369 HKQIVVLARSTDHGATFNN 387 >A1SQD6.1 A1SQD6_NOCSJ Putative uncharacterized protein Length = 617 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 106/246 (43%), Gaps = 39/246 (15%) Query: 13 EPSIAVSTLNPNIM-------CVVAVEDSTGTALTGFYRSIDGGATWSTTVLPQAPGYMS 65 EP+ AV NP+I+ C V + G GFYRS DGG TW+ ++LP P S Sbjct: 75 EPTAAVDPGNPSIVTSGSNDYCTVEL---AGGTWAGFYRSTDGGGTWTDSLLPGYPTDSS 131 Query: 66 AEA---------------PTIDYTFPDTFIVAVHYFNEF--MDGTIATYTSFDNGVTFNP 108 AE P + + FN +G++ T + + Sbjct: 132 AEGLASPLHQRGITNAGDPVQAWDRDGRLFYMGNAFNRVAPQNGSVWVATYDQHAAHYVR 191 Query: 109 PVIVQRGF----GLYVHNDEPFIAVDRSPSSPYRGNAYVGYTPIYDLSQNSAIFFQRSLD 164 VIV +G G + ND+ I VDR SS + GN YV ++ ++ N+ I F RS D Sbjct: 192 TVIVGKGTPALSGKF--NDKTSIEVDRGLSSAFAGNVYVAWS-VFQGGGNNEIMFARSTD 248 Query: 165 EGITWERPLRISDPRGELDRAALAVGLAGELYVGFIQTRSDLPTNA----YVRVSLDGGV 220 G T+ P RIS+ A +AV G +YV + T T +VR S DGG Sbjct: 249 HGRTFSNPTRISEGSLGNQFADIAVTRDGTVYVAWNGTVGSRATGHDAMLWVR-STDGGR 307 Query: 221 SFNPPV 226 SF P Sbjct: 308 SFTKPA 313 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,624,404,761 Number of extensions: 116834129 Number of successful extensions: 242257 Number of sequences better than 1.0e-05: 27 Number of HSP's gapped: 242210 Number of HSP's successfully gapped: 27 Length of query: 408 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 270 Effective length of database: 1,760,596,133 Effective search space: 475360955910 Effective search space used: 475360955910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)