BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0045.p (310 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K413.1 B3K413_9BACI Helix-turn-helix-domain containing protein... 194 7e-48 Q2BEU0.1 Q2BEU0_9BACI Transcriptional regulator (AraC/XylS famil... 184 1e-44 Q9KEY8.1 Q9KEY8_BACHD Transcriptional regulator (AraC/XylS family) 174 1e-41 C4L0K1.1 C4L0K1_EXISA Transcriptional regulator, AraC family 167 1e-39 A8VQU2.1 A8VQU2_9BACI GCN5-related N-acetyltransferase 160 1e-37 >B3K413.1 B3K413_9BACI Helix-turn-helix-domain containing protein AraC type Length = 289 Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 103/273 (37%), Positives = 154/273 (56%), Gaps = 8/273 (2%) Query: 8 LYYLAGTVNAMDLRLHACAYSFHXXXXXXXXXX-XXXXXXXXQVVGSCRALVNGKMSIIE 66 L +L G V M+ RL C YS+H Q GSC NG ++ Sbjct: 5 LIFLLGVVTIMEARLLICDYSYHFQQFSNSHRGGLTTYLFRLQTEGSCEIYCNGIEHHVQ 64 Query: 67 PGDLLIYRPGEPYHLEVEE--MDGKIESGDYYLLCEGSWIEEWWKAQSRPIQQRIHMDTG 124 GDLL+ +PG+ Y L V+E DG++ SGDY++ C+GSWI++WW RP+ + +D Sbjct: 65 AGDLLLLKPGDEYELRVKEDGEDGRVSSGDYFIFCDGSWIDDWWNRIPRPVVSHVGLDDY 124 Query: 125 MLSLWQQLYIEQHRIVQRNPEXXXXXXXXXXXXXXXXXVD-AVSRQDPEGRSNELVVLMR 183 +L LW+Q+ +E+ +R E +D A++ P R + ++ Sbjct: 125 LLGLWRQMLLEK----RRGLEGEIGELTDYLLRSLCLCLDRAITEIKPTDRLAFTALRLK 180 Query: 184 RYINVNALRRLRVEEVAKAAGLSVSRAVHLFKKLTGFTIIRYTQEIRLSNAMERIRYTDL 243 R++ +A ++EE A GLS+SRAV LFK+ G T+I+Y EIRL+ A+ERI+Y+ + Sbjct: 181 RFVEEHATLTFKLEEAASHVGLSLSRAVKLFKEYYGKTMIQYALEIRLNAAVERIKYSTM 240 Query: 244 SLENIAGTCGFGTYSYFHKVFKARYGISPKEAR 276 +LE IA TCGF +YSYFH+VF+A YG+SP + R Sbjct: 241 TLEEIAETCGFASYSYFHRVFRANYGVSPVKFR 273 >Q2BEU0.1 Q2BEU0_9BACI Transcriptional regulator (AraC/XylS family) protein Length = 284 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/228 (44%), Positives = 132/228 (57%), Gaps = 9/228 (3%) Query: 49 QVVGSCRALVNGKMSIIEPGDLLIYRPGEPYHLEVEEM--DGKIESGDYYLLCEGSWIEE 106 Q G+C A+V G +E GDLL+ +PG+ Y L V+ + D I SGDY+L+CEG WIE+ Sbjct: 46 QTEGACEAIVRGNRRKLEKGDLLLIKPGDHYELMVDSLLPDKAILSGDYHLICEGKWIED 105 Query: 107 WWKAQSRPIQQRIHMDTGMLSLWQQLYIEQHRIVQR--NPEXXXXXXXXXXXXXXXXXVD 164 WWK ++P RI D +LSLW+ L IE R + N Sbjct: 106 WWKRSNKPDVARIDADERLLSLWRHLIIELRRPSKEEFNELSDYLLRSLCILLERSLKES 165 Query: 165 AVSRQDPEGRSNELVVLMRRYINVNALRRLRVEEVAKAAGLSVSRAVHLFKKLTGFTIIR 224 ++S P V M R+I +AL +VEE A AGLSVSRAVHLFK+ TG TI+ Sbjct: 166 SLSAHRPYA-----VTRMLRFIEEHALSSFKVEEAAAHAGLSVSRAVHLFKESTGKTIME 220 Query: 225 YTQEIRLSNAMERIRYTDLSLENIAGTCGFGTYSYFHKVFKARYGISP 272 Y EIRL+ A ER++YT ++LE IA CGFGTY YFH+VF +G +P Sbjct: 221 YAMEIRLAAAEERMKYTTMTLEQIAEECGFGTYPYFHRVFSKMHGRAP 268 >Q9KEY8.1 Q9KEY8_BACHD Transcriptional regulator (AraC/XylS family) Length = 263 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 138/234 (58%), Gaps = 16/234 (6%) Query: 49 QVVGSCRALVNGKMSIIEPGDLLIYRPGEPYHLEVEEMDGKIESGDYYLLCEGSWIEEWW 108 Q G+C+ +N + +E GDLL+ P + + L VE+ D SGDY+LLCEG WI+ WW Sbjct: 31 QTEGTCKVKLNEREFQLEKGDLLLTNPEDMFELIVEDGDN---SGDYHLLCEGDWIDAWW 87 Query: 109 KAQSRPIQQRIHMDTGMLSLWQQLYIEQHRIV-QRNPEXXXXXXXXXXXXXXXXXVDAVS 167 + +P I +D ++++W+ + +E R V ++N E ++ Sbjct: 88 RRSEKPSVSTIDLDENIMAIWRCMILEDRRSVSEKNDEILHYLVQTLCL--------SLE 139 Query: 168 RQDPEGRSNE----LVVLMRRYINVNALRRLRVEEVAKAAGLSVSRAVHLFKKLTGFTII 223 R E +S V M RYI NA+ ++VE+VAK AGLSVSR+ HLFK G T+I Sbjct: 140 RAAMETKSMSSRPYTVTRMMRYIEENAITGIKVEDVAKHAGLSVSRSAHLFKSSVGKTMI 199 Query: 224 RYTQEIRLSNAMERIRYTDLSLENIAGTCGFGTYSYFHKVFKARYGISPKEARN 277 Y EI+L+ A++ +++T +LE+IA CGFG+YSYFH+VFK YGISP + R+ Sbjct: 200 EYAHEIKLAVAIDFLKHTTYTLEHIAEDCGFGSYSYFHRVFKKHYGISPGDYRS 253 >C4L0K1.1 C4L0K1_EXISA Transcriptional regulator, AraC family Length = 259 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/250 (39%), Positives = 130/250 (52%), Gaps = 11/250 (4%) Query: 25 CAYSFHXXXXXXXXXXXXXX-XXXXQVVGSCRALVNGKMSIIEPGDLLIYRPGEPYHLEV 83 C YS+H Q G+ R +VNG+ I PGD+LI RPG+ Y + V Sbjct: 6 CGYSYHTTTYTFPFANRLDTYLIRLQTAGTARIVVNGETMITRPGDVLIVRPGDFYEMHV 65 Query: 84 EEMDGKIESGDYYLLCEGSWIEEWWKAQSRPIQQRIHMDTGMLSLWQQLYIEQHRIVQRN 143 + SGDY++ C G I+ WW A R I +D+ +LSLWQ + E V+R Sbjct: 66 D----TPASGDYHIFCTGHSIDTWWHATPRGRLNTIAIDSRLLSLWQHITEE----VRRP 117 Query: 144 PEXXXXXXXXXXXXXXXXXVDAVSRQDPEGRSNELVVL-MRRYINVNALRRLRVEEVAKA 202 P +D S QD ++ VV M R+I + +V +VA A Sbjct: 118 PSEQSAVLIETLVQALLLMLDR-SIQDVHSQARPPVVSRMMRFIEAHVTSDFKVSDVADA 176 Query: 203 AGLSVSRAVHLFKKLTGFTIIRYTQEIRLSNAMERIRYTDLSLENIAGTCGFGTYSYFHK 262 GLSVSR VHLFK+ TG TII Y Q IRL A E++RYT SLE IA GF +Y YFH+ Sbjct: 177 VGLSVSRTVHLFKEGTGMTIIEYAQSIRLQLAEEQMRYTKHSLETIAELSGFRSYPYFHR 236 Query: 263 VFKARYGISP 272 +FK +YG++P Sbjct: 237 IFKRKYGVAP 246 >A8VQU2.1 A8VQU2_9BACI GCN5-related N-acetyltransferase Length = 257 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 131/231 (56%), Gaps = 12/231 (5%) Query: 49 QVVGSCRALVNGKMSIIEPGDLLIYRPGEPYHLEVEEMDGKIESGDYYLLCEGSWIEEWW 108 QV G NGK I GDL + R G+ H ++ G+ +S DY++ C+GSW+ EW+ Sbjct: 33 QVEGHATIRSNGKTYPISQGDLYLGRKGD--HYSIDTPAGQ-DSTDYHIFCDGSWVAEWF 89 Query: 109 KAQSRPIQQRIHMDTGMLSLWQQLYIEQHRIVQRNPEXXXXXXXXXXXXXXXXXVDAVSR 168 P+ I +D +LSLW+ L IEQ R P+ + S Sbjct: 90 HQPGLPVVHNIRLDDKLLSLWRHLSIEQ-----RRPDAGETPELSVYLLKALFVMLKQSV 144 Query: 169 QDPEGRSNE---LVVLMRRYINVNALRRLRVEEVAKAAGLSVSRAVHLFKKLTGFTIIRY 225 D E NE +V M R I A + +VE+VA +AGLSVSRA HLFK+ TG ++I Y Sbjct: 145 ND-ETSGNERPFIVTKMMRTIEELAASKFQVEDVAASAGLSVSRASHLFKEHTGQSMIDY 203 Query: 226 TQEIRLSNAMERIRYTDLSLENIAGTCGFGTYSYFHKVFKARYGISPKEAR 276 QEIRL+ A+ +++YT ++LE+IA +CGFG+Y YFH++FK YG SP + R Sbjct: 204 AQEIRLNMAVNQMQYTSMTLEHIAESCGFGSYVYFHRIFKHHYGKSPGQFR 254 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,630,450,534 Number of extensions: 59957038 Number of successful extensions: 142789 Number of sequences better than 1.0e-05: 1160 Number of HSP's gapped: 144005 Number of HSP's successfully gapped: 1160 Length of query: 310 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 175 Effective length of database: 1,788,859,178 Effective search space: 313050356150 Effective search space used: 313050356150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)