BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0041.p (157 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I376.1 B8I376_CLOCE Transcriptional regulator, XRE family 194 2e-48 A6LZF6.1 A6LZF6_CLOB8 Transcriptional regulator, XRE family 182 1e-44 C3RIV3.1 C3RIV3_9MOLU Transcriptional regulator 142 9e-33 B0N1L7.1 B0N1L7_9FIRM Putative uncharacterized protein 140 5e-32 C5CG05.1 C5CG05_9THEM Putative uncharacterized protein 140 5e-32 >B8I376.1 B8I376_CLOCE Transcriptional regulator, XRE family Length = 149 Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 90/146 (61%), Positives = 112/146 (76%) Query: 12 EMKGIIDFLLVAKKETYAGKGPETPPSRPQSHDLAFQKGNLKYLDTYLGTKKFAGEEALW 71 E +++FL+ AKK TYAGKGPE PSRPQSHDL +++G+LKY+DTY+G F+GEEA+W Sbjct: 4 EHNDVVNFLIKAKKATYAGKGPELLPSRPQSHDLLYEEGHLKYIDTYIGGTAFSGEEAMW 63 Query: 72 EDGKPVWALNYAGRVLADGFSGDFLKEALLHVPEDKPFRGPETYRRDGFTYKCTVDGDFQ 131 P W++NY GRV+A+GFSGDFLKEALL++P +KPFRGPE Y+RD Y V GDF Sbjct: 64 YQEIPFWSMNYCGRVIAEGFSGDFLKEALLNIPFEKPFRGPEKYKRDDLLYTSKVHGDFL 123 Query: 132 WFSGYEEIWNGADKVYECRFHGGLIQ 157 WF G EEI+ KVYECRFHGG I+ Sbjct: 124 WFFGMEEIYFHDVKVYECRFHGGSIK 149 >A6LZF6.1 A6LZF6_CLOB8 Transcriptional regulator, XRE family Length = 226 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 83/144 (57%), Positives = 105/144 (72%) Query: 14 KGIIDFLLVAKKETYAGKGPETPPSRPQSHDLAFQKGNLKYLDTYLGTKKFAGEEALWED 73 + IIDFL AKK TYAG G E SRP SHDL + +GNLKY+DTYLG ++F+GEE LW+D Sbjct: 83 RNIIDFLCRAKKATYAGNGGECKSSRPNSHDLEYVEGNLKYIDTYLGGERFSGEEGLWQD 142 Query: 74 GKPVWALNYAGRVLADGFSGDFLKEALLHVPEDKPFRGPETYRRDGFTYKCTVDGDFQWF 133 P W++NY GRVL + FSG FLKEAL V E+ P+RGP Y+ + Y C ++G+F+WF Sbjct: 143 DIPFWSMNYTGRVLDERFSGSFLKEALSLVTEENPYRGPIIYQNGQYKYHCIINGEFKWF 202 Query: 134 SGYEEIWNGADKVYECRFHGGLIQ 157 G+EEI+ G KVYEC FHGG I+ Sbjct: 203 QGHEEIYFGNIKVYECYFHGGSIK 226 >C3RIV3.1 C3RIV3_9MOLU Transcriptional regulator Length = 221 Score = 142 bits (358), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 72/141 (51%), Positives = 98/141 (69%) Query: 17 IDFLLVAKKETYAGKGPETPPSRPQSHDLAFQKGNLKYLDTYLGTKKFAGEEALWEDGKP 76 IDF+L AKK TYA K +T SRP SHD +Q+ Y+DT++G++ F GEE +++D P Sbjct: 81 IDFMLKAKKATYAKKEGKTVSSRPNSHDYQYQENEYLYIDTFVGSEFFGGEECVYKDNIP 140 Query: 77 VWALNYAGRVLADGFSGDFLKEALLHVPEDKPFRGPETYRRDGFTYKCTVDGDFQWFSGY 136 ++ +NY G+VL + FSGDFLKEALL V PFRGP Y +TY C+ DGD+++F+G Sbjct: 141 LYVMNYYGKVLDEAFSGDFLKEALLLVDRISPFRGPALYTNGNYTYHCSYDGDYEFFNGK 200 Query: 137 EEIWNGADKVYECRFHGGLIQ 157 EEI+ KVYEC FHGG ++ Sbjct: 201 EEIYYNNIKVYECLFHGGSVK 221 >B0N1L7.1 B0N1L7_9FIRM Putative uncharacterized protein Length = 221 Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 71/137 (51%), Positives = 95/137 (69%) Query: 17 IDFLLVAKKETYAGKGPETPPSRPQSHDLAFQKGNLKYLDTYLGTKKFAGEEALWEDGKP 76 IDF+L AKK TYA K +T SRP SHD +Q+ Y+DT++G++ F GEE +++D P Sbjct: 81 IDFMLKAKKATYAKKEGKTVSSRPNSHDYQYQENEYLYIDTFVGSEFFGGEECVYKDNIP 140 Query: 77 VWALNYAGRVLADGFSGDFLKEALLHVPEDKPFRGPETYRRDGFTYKCTVDGDFQWFSGY 136 ++ +NY G+VL + FSGDFLKEALL V PFRGP Y +TY C+ DGD+++F+G Sbjct: 141 LYVMNYYGKVLDEAFSGDFLKEALLLVDRISPFRGPALYTNGNYTYHCSYDGDYEFFNGK 200 Query: 137 EEIWNGADKVYECRFHG 153 EEI+ KVYEC FHG Sbjct: 201 EEIYYNNIKVYECLFHG 217 >C5CG05.1 C5CG05_9THEM Putative uncharacterized protein Length = 152 Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 69/147 (46%), Positives = 94/147 (63%), Gaps = 3/147 (2%) Query: 14 KGIIDFLLVAKKETYAGKGPETPPSRPQSHDLAFQKGNLKYLDTYLGTKKFAGEEALWED 73 K I FL+ AK+ TYAG G E+ PSRP S DL +Q+G Y+DTYLG+ F GEEA+W++ Sbjct: 6 KEFIQFLIRAKQNTYAGDGEESEPSRPCSKDLHYQEGEFLYIDTYLGSFDFIGEEAVWKN 65 Query: 74 GKPVWALNYAGRVLADGFSGDF---LKEALLHVPEDKPFRGPETYRRDGFTYKCTVDGDF 130 G+P+W +NY GR+L D F LKEAL +VP P+RGPET++ F Y C G+ Sbjct: 66 GRPIWGMNYYGRMLVDDIPEGFIKCLKEALKNVPASAPYRGPETFKYGSFEYYCEWKGNV 125 Query: 131 QWFSGYEEIWNGADKVYECRFHGGLIQ 157 + F G E+I +Y+ FHGG ++ Sbjct: 126 ECFEGNEKILFEGKIIYKLSFHGGTLK 152 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.142 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,148,478,007 Number of extensions: 52092471 Number of successful extensions: 82129 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 82105 Number of HSP's successfully gapped: 17 Length of query: 157 Length of database: 3,060,696,203 Length adjustment: 118 Effective length of query: 39 Effective length of database: 1,949,016,433 Effective search space: 76011640887 Effective search space used: 76011640887 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)