BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0039.p (424 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2ZYB7.1 C2ZYB7_BACCE Transcriptional regulator, AraC 306 2e-81 C2Z9J8.1 C2Z9J8_BACCE Transcriptional regulator, AraC 306 2e-81 C2XVN4.1 C2XVN4_BACCE Transcriptional regulator, AraC 302 4e-80 C2PX88.1 C2PX88_BACCE Transcriptional regulator, AraC 301 1e-79 A9VK28.1 A9VK28_BACWK Transcriptional regulator, AraC family 300 1e-79 >C2ZYB7.1 C2ZYB7_BACCE Transcriptional regulator, AraC Length = 410 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 165/412 (40%), Positives = 256/412 (62%), Gaps = 12/412 (2%) Query: 9 ERIPYICRLLYEAYRLPVAWMNSKGETEQTPHPSAHIRPPVEGVQGLPAEVLEMMQEAAD 68 E + YIC+L+++ ++ P+ +++ KG P+ P + L +V Sbjct: 7 EDLYYICKLVFDIHKTPIFFIDDKGNLAFEISPNFQHNPLYSSKEELLNQVF-------- 58 Query: 69 SRKDSRTAAFPLICTTAYLENFIVLPLYGELEPAGAIVIGPSLYAPLTEENAGILLRDHN 128 +D+ FP++ T++LENF + L + +G I++GP LY+ L+E + L+ D Sbjct: 59 --RDNPPYTFPVLEETSFLENFFSINLRLNDQLSGNIIVGPVLYSRLSETSIKGLINDLQ 116 Query: 129 IPAGGQEAWLQYYRSLPVLDRMRLYHAAILLYTLATGQALSISELLQDSQPLQTAQLKDS 188 + +E ++YY SLP+L + + +++LY + Q L I+++LQ + ++ A+ + Sbjct: 117 LKID-KEKMIRYYHSLPILSNLNFLNVSMVLYYMLYQQKLDIADILQKNILVKKAEFEIE 175 Query: 189 APDLNLSYRRENIWLHHDPSQERELFRHIRSGDKGGLLQTHAGFNED-QYGLLSKTSQLR 247 PD+ +S +R++ H DP ERE+F I+ G K L++ E G+LSKTS LR Sbjct: 176 QPDVQISEQRQSTLTHIDPLIEREIFECIKLGKKDDLIKNLKKLPESGDLGVLSKTSHLR 235 Query: 248 SKKNLAISSITLATRAAIDGGLFWEIAYTLSDFHIQHIEELKDIPAVDRAQLAALCDFAD 307 S+KN AI++ITLATR+AIDGGLF EIAYTLSD IQ +EE+ A+ AL +F++ Sbjct: 236 SQKNSAIAAITLATRSAIDGGLFPEIAYTLSDLFIQKLEEINKSEAISPFLENALLEFSE 295 Query: 308 HVKDNRRSKLSRTSALCQNYIFNHLYEELTLSRLAGVAGLNASYLSQLFKKETGLAVSDY 367 VK+ K S+ +CQNYIF HLYEE+TLS LA + LN SYLS LFKKE G+++ +Y Sbjct: 296 RVKNGTMQKHSKPINVCQNYIFTHLYEEITLSHLAEIVALNPSYLSSLFKKEIGISLGEY 355 Query: 368 IQRERIEEAKRLMELPGITLSDIATRLHFNDQSYFTKVFKKYTATTPKQFRH 419 IQR +I+E+K LM ++S+I+T L+F+DQS+FTKVFKK+T +PKQF++ Sbjct: 356 IQRAKIDESKSLMTYTRHSISEISTLLNFHDQSHFTKVFKKHTGVSPKQFKN 407 >C2Z9J8.1 C2Z9J8_BACCE Transcriptional regulator, AraC Length = 410 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 165/412 (40%), Positives = 256/412 (62%), Gaps = 12/412 (2%) Query: 9 ERIPYICRLLYEAYRLPVAWMNSKGETEQTPHPSAHIRPPVEGVQGLPAEVLEMMQEAAD 68 E + YIC+L+++ ++ P+ +++ KG P+ P + L +V Sbjct: 7 EDLYYICKLVFDIHKTPIFFIDDKGNLAFEISPNFQHNPLYSSKEELLNQVF-------- 58 Query: 69 SRKDSRTAAFPLICTTAYLENFIVLPLYGELEPAGAIVIGPSLYAPLTEENAGILLRDHN 128 +D+ FP++ T++LENF + L + +G I++GP LY+ L+E + L+ D Sbjct: 59 --RDNPPYTFPVLEETSFLENFFSINLRLNDQLSGNIIVGPVLYSRLSETSIKGLINDLQ 116 Query: 129 IPAGGQEAWLQYYRSLPVLDRMRLYHAAILLYTLATGQALSISELLQDSQPLQTAQLKDS 188 + +E ++YY SLP+L + + +++LY + Q L I+++LQ + ++ A+ + Sbjct: 117 LKID-KEKMIRYYHSLPILSNLNFLNVSMVLYYMLYQQKLDIADILQKNILVKKAEFEIE 175 Query: 189 APDLNLSYRRENIWLHHDPSQERELFRHIRSGDKGGLLQTHAGFNED-QYGLLSKTSQLR 247 PD+ +S +R++ H DP ERE+F I+ G K L++ E G+LSKTS LR Sbjct: 176 QPDVQISEQRQSTLTHIDPLIEREIFECIKLGKKDDLIKNLKKLPESGDLGVLSKTSHLR 235 Query: 248 SKKNLAISSITLATRAAIDGGLFWEIAYTLSDFHIQHIEELKDIPAVDRAQLAALCDFAD 307 S+KN AI++ITLATR+AIDGGLF EIAYTLSD IQ +EE+ A+ AL +F++ Sbjct: 236 SQKNSAIAAITLATRSAIDGGLFPEIAYTLSDLFIQKLEEINKSEAISPFLENALLEFSE 295 Query: 308 HVKDNRRSKLSRTSALCQNYIFNHLYEELTLSRLAGVAGLNASYLSQLFKKETGLAVSDY 367 VK+ K S+ +CQNYIF HLYEE+TLS LA + LN SYLS LFKKE G+++ +Y Sbjct: 296 RVKNGTMQKHSKPINVCQNYIFTHLYEEITLSHLAEIVALNPSYLSSLFKKEIGISLGEY 355 Query: 368 IQRERIEEAKRLMELPGITLSDIATRLHFNDQSYFTKVFKKYTATTPKQFRH 419 IQR +I+E+K LM ++S+I+T L+F+DQS+FTKVFKK+T +PKQF++ Sbjct: 356 IQRAKIDESKSLMTYTRHSISEISTLLNFHDQSHFTKVFKKHTGVSPKQFKN 407 >C2XVN4.1 C2XVN4_BACCE Transcriptional regulator, AraC Length = 411 Score = 302 bits (773), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 164/412 (39%), Positives = 258/412 (62%), Gaps = 12/412 (2%) Query: 9 ERIPYICRLLYEAYRLPVAWMNSKGETEQTPHPSAHIRPPVEGVQGLPAEVLEMMQEAAD 68 E + YIC+L+++ ++ P+ ++++KG+ P P + L +V Sbjct: 7 EDLYYICKLVFDIHKTPIFFIDNKGDLAFEISPHFQHNPLYSSKEVLLNQVF-------- 58 Query: 69 SRKDSRTAAFPLICTTAYLENFIVLPLYGELEPAGAIVIGPSLYAPLTEENAGILLRDHN 128 ++ FP++ TA+LENF + L + +G I++GP LY+ L+E + ++ D Sbjct: 59 --REDPPYTFPVLEETAFLENFFSINLRLNDQLSGNILVGPVLYSRLSETSIKGIVNDLQ 116 Query: 129 IPAGGQEAWLQYYRSLPVLDRMRLYHAAILLYTLATGQALSISELLQDSQPLQTAQLKDS 188 + +E ++YY+SLPVL ++ + +++LY + Q L I+++LQ + L+ + Sbjct: 117 LKIDKEE-MIRYYQSLPVLSNLQFLNISMVLYYMLYQQKLDIADILQKNILLKKDDFEIE 175 Query: 189 APDLNLSYRRENIWLHHDPSQERELFRHIRSGDKGGLLQTHAGFNED-QYGLLSKTSQLR 247 P +++S +R++ H DP ER++F I+ G K L++ E G+LSKTS LR Sbjct: 176 QPTIHISEQRQSTLTHIDPLVERKIFECIKEGKKDDLIKNLRKLPESGDLGVLSKTSHLR 235 Query: 248 SKKNLAISSITLATRAAIDGGLFWEIAYTLSDFHIQHIEELKDIPAVDRAQLAALCDFAD 307 S+KN AI++ITLATR+AIDGGLF EIAYTLSD IQ +EE+K A+ AL +F++ Sbjct: 236 SQKNSAIAAITLATRSAIDGGLFPEIAYTLSDLLIQKLEEIKKSEAISPFLENALLEFSE 295 Query: 308 HVKDNRRSKLSRTSALCQNYIFNHLYEELTLSRLAGVAGLNASYLSQLFKKETGLAVSDY 367 VK+ + K S+ +CQNYIF HLYE++TLS LA + LN SYLS LFKKE G+++ +Y Sbjct: 296 RVKNGKMQKHSKPINICQNYIFTHLYEDITLSHLAEIVVLNPSYLSSLFKKEVGISLGEY 355 Query: 368 IQRERIEEAKRLMELPGITLSDIATRLHFNDQSYFTKVFKKYTATTPKQFRH 419 IQR +I+E+K LM ++S+I+T L+F+DQS+FTKVFKK+T +PKQF+H Sbjct: 356 IQRAKIDESKSLMTYTKHSISEISTLLNFHDQSHFTKVFKKHTGISPKQFKH 407 >C2PX88.1 C2PX88_BACCE Transcriptional regulator, AraC Length = 411 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 164/412 (39%), Positives = 257/412 (62%), Gaps = 12/412 (2%) Query: 9 ERIPYICRLLYEAYRLPVAWMNSKGETEQTPHPSAHIRPPVEGVQGLPAEVLEMMQEAAD 68 E + YIC+L+++ ++ P+ ++++KG+ P P + L +V Sbjct: 7 EDLYYICKLVFDIHKTPIFFIDNKGDLAFEISPHFQHNPLYSSKEVLLNQVF-------- 58 Query: 69 SRKDSRTAAFPLICTTAYLENFIVLPLYGELEPAGAIVIGPSLYAPLTEENAGILLRDHN 128 ++ FP++ TA+LENF + L + +G I++GP LY L+E + ++ D Sbjct: 59 --REDPPYTFPVLEETAFLENFFSINLRLNDQLSGNILVGPVLYFRLSETSIKGIVNDLQ 116 Query: 129 IPAGGQEAWLQYYRSLPVLDRMRLYHAAILLYTLATGQALSISELLQDSQPLQTAQLKDS 188 + +E ++YY+SLPVL ++ + +++LY + Q L I+++LQ + L+ + Sbjct: 117 LKIDKEE-MIRYYQSLPVLSNLQFLNISMVLYYMLYQQKLDIADILQKNILLKKDDFEIE 175 Query: 189 APDLNLSYRRENIWLHHDPSQERELFRHIRSGDKGGLLQTHAGFNED-QYGLLSKTSQLR 247 P +++S +R++ H DP ER++F I+ G K L++ E G+LSKTS LR Sbjct: 176 QPAIHISEQRQSTLTHIDPLVERKIFECIKEGKKDDLIKNLRKLPESGDLGVLSKTSHLR 235 Query: 248 SKKNLAISSITLATRAAIDGGLFWEIAYTLSDFHIQHIEELKDIPAVDRAQLAALCDFAD 307 S+KN AI++ITLATR+AIDGGLF EIAYTLSD IQ +EE+K A+ AL +F++ Sbjct: 236 SQKNSAIAAITLATRSAIDGGLFPEIAYTLSDLLIQKLEEIKKSEAISPFLENALLEFSE 295 Query: 308 HVKDNRRSKLSRTSALCQNYIFNHLYEELTLSRLAGVAGLNASYLSQLFKKETGLAVSDY 367 VK+ + K S+ +CQNYIF HLYE++TLS LA + LN SYLS LFKKE G+++ +Y Sbjct: 296 RVKNGKMQKHSKPINICQNYIFTHLYEDITLSHLAEIVVLNPSYLSSLFKKEVGISLGEY 355 Query: 368 IQRERIEEAKRLMELPGITLSDIATRLHFNDQSYFTKVFKKYTATTPKQFRH 419 IQR +I+E+K LM ++S+I+T L+F+DQS+FTKVFKK+T +PKQF+H Sbjct: 356 IQRAKIDESKSLMTYTKHSISEISTLLNFHDQSHFTKVFKKHTGISPKQFKH 407 >A9VK28.1 A9VK28_BACWK Transcriptional regulator, AraC family Length = 411 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 163/412 (39%), Positives = 258/412 (62%), Gaps = 12/412 (2%) Query: 9 ERIPYICRLLYEAYRLPVAWMNSKGETEQTPHPSAHIRPPVEGVQGLPAEVLEMMQEAAD 68 E + YIC+L+++ ++ P+ ++++KG+ P P + L +V Sbjct: 7 EDLYYICKLVFDIHKTPIFFIDNKGDLAFEISPHFQHNPLYSSKEVLLNQVF-------- 58 Query: 69 SRKDSRTAAFPLICTTAYLENFIVLPLYGELEPAGAIVIGPSLYAPLTEENAGILLRDHN 128 +++ FP++ TA+LENF + L + +G I++GP LY+ L+E + ++ D Sbjct: 59 --RENPPYTFPVLEETAFLENFFSINLRLNDQLSGNILVGPVLYSRLSETSIKGIVNDLQ 116 Query: 129 IPAGGQEAWLQYYRSLPVLDRMRLYHAAILLYTLATGQALSISELLQDSQPLQTAQLKDS 188 + +E ++YY+SLPVL ++ + +++LY + Q L I+++LQ + L+ + Sbjct: 117 LKIDKEE-MIRYYQSLPVLSNLQFLNISMVLYYMLYQQKLDIADILQKNILLKKDDFEIE 175 Query: 189 APDLNLSYRRENIWLHHDPSQERELFRHIRSGDKGGLLQTHAGFNED-QYGLLSKTSQLR 247 P +++S +R++ H DP ER++F I+ G K L++ E G+LSKTS LR Sbjct: 176 QPAIHISEQRQSTLTHIDPLVERKIFECIKEGKKDDLIKNLRKLPESGDLGVLSKTSHLR 235 Query: 248 SKKNLAISSITLATRAAIDGGLFWEIAYTLSDFHIQHIEELKDIPAVDRAQLAALCDFAD 307 S+KN AI++ITLATR+AIDGGLF EIAYTLSD IQ +EE+K A+ AL +F++ Sbjct: 236 SQKNSAIAAITLATRSAIDGGLFPEIAYTLSDLLIQKLEEIKKSEAISPFLENALLEFSE 295 Query: 308 HVKDNRRSKLSRTSALCQNYIFNHLYEELTLSRLAGVAGLNASYLSQLFKKETGLAVSDY 367 VK+ + K + +CQNYIF HLYE++TLS LA + LN SYLS LFKKE G+++ +Y Sbjct: 296 QVKNGKMQKHLKPINICQNYIFTHLYEDITLSHLAEIVALNPSYLSSLFKKEVGISLGEY 355 Query: 368 IQRERIEEAKRLMELPGITLSDIATRLHFNDQSYFTKVFKKYTATTPKQFRH 419 IQR +I+E+K LM ++S+I+T L+F+DQSYFTKVFKK+T +PKQF++ Sbjct: 356 IQRAKIDESKSLMTYTKHSISEISTLLNFHDQSYFTKVFKKHTGISPKQFKN 407 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,537,611,608 Number of extensions: 104859686 Number of successful extensions: 276236 Number of sequences better than 1.0e-05: 3747 Number of HSP's gapped: 276516 Number of HSP's successfully gapped: 3747 Length of query: 424 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 286 Effective length of database: 1,760,596,133 Effective search space: 503530494038 Effective search space used: 503530494038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)