BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0545.0036.p
         (104 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2Q5Q4.1 C2Q5Q4_BACCE Multidrug resistance protein ykkD               117   3e-25
C3IBB9.1 C3IBB9_BACTU Multidrug resistance protein ykkD               115   1e-24
Q9KF12.1 Q9KF12_BACHD Chaperonin                                      110   3e-23
C1PCT3.1 C1PCT3_BACCO Small multidrug resistance protein              105   2e-21
B4AEW8.1 B4AEW8_BACPU DMT superfamily drug/metabolite transporter     103   5e-21

>C2Q5Q4.1 C2Q5Q4_BACCE Multidrug resistance protein ykkD
          Length = 104

 Score =  117 bits (293), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 71/103 (68%)

Query: 1   MDWLMLIAAGCCEMLGVAMLGKLQRDRTWPTFCXXXXXXXXXXXXXXQAMNTLPMGTAYA 60
           M W+ LI AG CEM GVAM+ KL +DR W +                 AM TLPMGTAYA
Sbjct: 1   MAWISLILAGLCEMFGVAMINKLHKDRNWQSLFLLILGFGLSFIFLAYAMETLPMGTAYA 60

Query: 61  VWTGIGASGGAVLGMLLYGEGRELRRIICIVMILGAAVGLKLL 103
           +WTGIGASGGA+LGM+ YGE ++ +R+I I M+LGAA+GLKL+
Sbjct: 61  IWTGIGASGGAILGMVFYGESKDWKRLIFIGMVLGAAIGLKLV 103


>C3IBB9.1 C3IBB9_BACTU Multidrug resistance protein ykkD
          Length = 104

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 70/103 (67%)

Query: 1   MDWLMLIAAGCCEMLGVAMLGKLQRDRTWPTFCXXXXXXXXXXXXXXQAMNTLPMGTAYA 60
           M W+ LI AG  EM GVAM+ KL +DR W +                 AM TLPMGTAYA
Sbjct: 1   MAWISLILAGLFEMFGVAMINKLHKDRNWQSLALLILGFGLSFIFLAYAMETLPMGTAYA 60

Query: 61  VWTGIGASGGAVLGMLLYGEGRELRRIICIVMILGAAVGLKLL 103
           +WTGIGASGGA+LGM+ YGE ++ RR++ I M+LGAA+GLKL+
Sbjct: 61  IWTGIGASGGAILGMIFYGESKDWRRLVFIGMVLGAAIGLKLV 103


>Q9KF12.1 Q9KF12_BACHD Chaperonin
          Length = 104

 Score =  110 bits (276), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 69/104 (66%)

Query: 1   MDWLMLIAAGCCEMLGVAMLGKLQRDRTWPTFCXXXXXXXXXXXXXXQAMNTLPMGTAYA 60
           M W++LIAAG CEM+GV M+ +L R R+W  +                AM +L MGTAYA
Sbjct: 1   MAWVILIAAGLCEMVGVLMINQLHRSRSWKAYAGMIIGFGLSFWLLAMAMQSLSMGTAYA 60

Query: 61  VWTGIGASGGAVLGMLLYGEGRELRRIICIVMILGAAVGLKLLG 104
           VWTGIGASGGA+LGML Y E R+  RIICI +IL A +GLK +G
Sbjct: 61  VWTGIGASGGALLGMLFYDEPRQTLRIICIALILAATIGLKFIG 104


>C1PCT3.1 C1PCT3_BACCO Small multidrug resistance protein
          Length = 104

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 67/103 (65%)

Query: 1   MDWLMLIAAGCCEMLGVAMLGKLQRDRTWPTFCXXXXXXXXXXXXXXQAMNTLPMGTAYA 60
           M W  L+ AG CEMLGVA +  + R R   +                 AM TLPMGTAYA
Sbjct: 1   MAWASLLIAGLCEMLGVAAMNMVNRRRNLQSVLLMVLAFGGSFLFMSFAMRTLPMGTAYA 60

Query: 61  VWTGIGASGGAVLGMLLYGEGRELRRIICIVMILGAAVGLKLL 103
           VWTGIGA+GGA++GML +GE R+ RRI+ I MILGAAVGLKL+
Sbjct: 61  VWTGIGAAGGAIVGMLFFGESRDWRRIVFITMILGAAVGLKLV 103


>B4AEW8.1 B4AEW8_BACPU DMT superfamily drug/metabolite transporter
          Length = 104

 Score =  103 bits (257), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 66/103 (64%)

Query: 1   MDWLMLIAAGCCEMLGVAMLGKLQRDRTWPTFCXXXXXXXXXXXXXXQAMNTLPMGTAYA 60
           M WL+LI AG  EM  V M+ + Q+D+                     AMNT+PMGTAYA
Sbjct: 1   MSWLLLIGAGILEMFCVTMMNQFQKDKHVKWILFIAAGFSMSFLMLSLAMNTIPMGTAYA 60

Query: 61  VWTGIGASGGAVLGMLLYGEGRELRRIICIVMILGAAVGLKLL 103
           +WTGIGA+GGA++GML YGE ++ +RI  I +IL AAVGLK++
Sbjct: 61  IWTGIGAAGGAIVGMLFYGESKDAKRIFFIALILSAAVGLKII 103


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.329    0.144    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 522,760,326
Number of extensions: 15766012
Number of successful extensions: 63034
Number of sequences better than 1.0e-05: 754
Number of HSP's gapped: 62770
Number of HSP's successfully gapped: 754
Length of query: 104
Length of database: 3,060,696,203
Length adjustment: 72
Effective length of query: 32
Effective length of database: 2,382,383,123
Effective search space: 76236259936
Effective search space used: 76236259936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)