BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0030.p (689 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8D3.1 B3K8D3_9BACI PRD domain protein 629 e-178 B1DC76.1 B1DC76_9BACL Transcriptional antiterminator, BglG 449 e-124 C0Z8I8.1 C0Z8I8_BREBN Transcriptional regulator 366 4e-99 Q45419.1 Q45419_BACST MtlR protein 300 4e-79 Q9K679.1 Q9K679_BACHD Transcriptional antiterminator 296 5e-78 >B3K8D3.1 B3K8D3_9BACI PRD domain protein Length = 689 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 345/688 (50%), Positives = 446/688 (64%), Gaps = 9/688 (1%) Query: 5 ITARQRQILWILLGVKXXXXXXXXXXSTGVSVRTVHREMEDIERLLGDFRLDLIRKSGKG 64 ITARQRQIL +L+ GVSVRTVHREME+IE+ L + L++KSG G Sbjct: 6 ITARQRQILLLLMSRTDGMTAAEIAADVGVSVRTVHREMEEIEKDLQGTGVVLLKKSGTG 65 Query: 65 IXXXXXXXXXXXXXXXXXXX-KPAEYSGEDRKIYELCTLLEAEEPVKLFTLAHSLKVTVA 123 I KPA+YS E+RKI LC LLEA+EP+KLF LAHSLKVTV Sbjct: 66 IRLEEEKPEGLSLLRRSLLAGKPADYSVEERKILMLCALLEADEPIKLFALAHSLKVTVP 125 Query: 124 TISYDLDELEPWVRKFGLELVRRRGYGVEITGQEADKRRAICRLAAEYLDLSDLVGHTPR 183 T+S DLDELEPW+++F L+L+RRRGYG+EI G E +RRAI RLA EYLD SDLVG Sbjct: 126 TVSNDLDELEPWMKRFNLKLIRRRGYGIEIDGAEGVRRRAIGRLAEEYLDYSDLVGDGYS 185 Query: 184 TESNPVFRLLLTTVGKVSLMTVESILWDMEWKWTAELPEIVYMEMLLGLAVTTRRIEIGR 243 PV LL+ + K +L+ VE LWDM W WT +L E Y L+ L+V+ RI+ GR Sbjct: 186 DTREPVTARLLSMIDKPALLDVEKTLWDMNWDWTEDLSESAYTSTLIALSVSVNRIKRGR 245 Query: 244 GINSSEEAGFSRVSDHRSIAGAEQFAKRLEAALGQEFARAEILYMAGLFDRVQESFSSSG 303 G+ +++ AG+ S+ A F RL L F +E++Y+A LF+ + S Sbjct: 246 GMEAADIAGYP--PSPVSVEEAGDFVGRLGETLEMNFRESEMIYIAQLFEAAKNMSEVSE 303 Query: 304 VAYGDMELMEIVYRLTESVAKRTGLPFERDRSLREGLLEHMDPALKRIREGTRIRNPLLG 363 + + D+E++EI +RL E V RTG+PF+ DR+LR GL+EH+ ALKRIREGTRIRNPLL Sbjct: 304 LVHADVEMVEIAHRLIERVQGRTGIPFQEDRTLRAGLVEHIGAALKRIREGTRIRNPLLS 363 Query: 364 PIRKDYDYLFTIVRAAAQDIQLELTIPDEEIGFLVMHFGASMERLNQLKRSVRAILVCXX 423 PIRKDY+ LF IVR + +++L+L+IPDEEIGFLVMHFGAS ERLNQ + ++AILVC Sbjct: 364 PIRKDYEELFGIVRRSVDELKLDLSIPDEEIGFLVMHFGASSERLNQPEHHLKAILVCSS 423 Query: 424 XXXXXXXXXXXXXKEMPQIEVLGNISWYEAARLPGTDYDLIISTIDLPIDKERYIKISPL 483 KEMPQIEVLGN+SWYEAAR+P YDLIISTIDLP+ K+RY+++SPL Sbjct: 424 GLSSSRLLGTRLNKEMPQIEVLGNVSWYEAARIPKEQYDLIISTIDLPLPKDRYVRLSPL 483 Query: 484 LTGEEIEKLLKYIQNITLKNREPASPGESDQPVREE---AALGRLKSYKGILDETVSLLE 540 LT ++ E LL++IQ+ + EPAS + + E+ A+ RL+ +++E VSLL+ Sbjct: 484 LTADDKEALLRFIQSTSF---EPASSRAAVSRIEEDRKAASFERLRMQAALMNEIVSLLD 540 Query: 541 RFRFHPLDNTGLSLSRTLAGTLELLNGSGVVGDAGIVLERLLERERMASQVIPDTGLALF 600 F + LDN L TL L + G + DA +V ERLLERERM +Q+IPDT LALF Sbjct: 541 GFHVYHLDNLQNDLQGTLNEALVKVYEQGALRDAEMVKERLLERERMGTQLIPDTTLALF 600 Query: 601 HTRSSHVHMSSLTLYRLSQPVLLEGGTEVRVILLMLAPRRLSRESLEVLSEISAXXXXXX 660 HTRS ++ SL+L+RL+ LE G + VILLMLAP++L +ESLEVLSEISA Sbjct: 601 HTRSRYITWPSLSLFRLAHQAPLEDGAQAGVILLMLAPKQLPKESLEVLSEISAMLLRSE 660 Query: 661 XXXXXXXRTEPEIRQYLSSELLHFFENK 688 E EIR YL+ EL HFF ++ Sbjct: 661 LIELMERGGEEEIRSYLAEELQHFFNHR 688 >B1DC76.1 B1DC76_9BACL Transcriptional antiterminator, BglG Length = 687 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 276/687 (40%), Positives = 389/687 (56%), Gaps = 10/687 (1%) Query: 4 KITARQRQILWILLGVKXXXXXXXXXXSTGVSVRTVHREMEDIERLLGDFRLDLIRKSGK 63 +I++R R+IL +LL VS RTVHRE+ +E +L L++KSG Sbjct: 2 RISSRSRRILELLLRNDHDLTAAQIAEEIQVSSRTVHRELAAVEEILRAEGARLLKKSGS 61 Query: 64 GIXXXXXXXXXXXXXXXXXXXKPAEYSGEDRKIYELCTLLEAEEPVKLFTLAHSLKVTVA 123 GI + E+S E+R+IY LC LLE+EEPVKLFTLAH KVT+ Sbjct: 62 GIRLQGEQAALDRLAQLVSVSEEIEFSPEERQIYLLCLLLESEEPVKLFTLAHEFKVTIP 121 Query: 124 TISYDLDELEPWVRKFGLELVRRRGYGVEITGQEADKRRAICRLAAEYLDLSDLVGHTPR 183 T++ DLD+L+ WV++F + L RRRGYG+E+TGQE R I ++ + + ++L+ Sbjct: 122 TVANDLDDLDQWVQRFEVTLTRRRGYGIELTGQEEHLREMIRQIIRDRFEDTELISSRNE 181 Query: 184 TESNPVFRLLLTTVGKVSLMTVESILWDMEWKWTAELPEIVYMEMLLGLAVTTRRIEIGR 243 ++ + R LL VG+ + VE ILW E + L E Y ++L+ L++ RRI G+ Sbjct: 182 LPAHSLDRRLLAIVGQSEMEAVEKILWSWEEYGGSRLSESAYTDLLIRLSIALRRIRAGK 241 Query: 244 GINSSEEAGFSRVSDHRSIAGAEQFAKRLEAALGQEFARAEILYMAGLFDRVQESFSSSG 303 + +S + SD A +RL A + F +E Y+ L VQ S S Sbjct: 242 TVEASSVEALRQESD------AVYLTERLAALTERTFPPSETAYIGRLLRSVQ-SDDLSV 294 Query: 304 VAYGDMELMEIVYRLTESVAKRTGLPFERDRSLREGLLEHMDPALKRIREGTRIRNPLLG 363 + D+ L + V L E G + +DRSLR+GL H+ AL+R+ EGT IRNPLL Sbjct: 295 LPADDLVLTDTVRSLIEYAQHAMGADYNKDRSLRDGLFLHLKDALQRLNEGTNIRNPLLD 354 Query: 364 PIRKDYDYLFTIVRAAAQDIQLELTIPDEEIGFLVMHFGASMERLNQLKRSVRAILVCXX 423 I+KDY LF +VR AA + ++ +PDEE+GFLVMHFGAS+ERL QL+++VRAILVC Sbjct: 355 QIKKDYASLFNVVRKAANRVFTDMVVPDEEVGFLVMHFGASLERLKQLRQNVRAILVCSS 414 Query: 424 XXXXXXXXXXXXXKEMPQIEVLGNISWYEAARLPGTDYDLIISTIDLPIDKERYIKISPL 483 KE+P+I ++ +SWYEA+R YDLIIST+DLP++ E+YIK+SPL Sbjct: 415 GIGSSKLLQIRLQKELPEIHIVDRVSWYEASRTEKDKYDLIISTVDLPLNGEQYIKVSPL 474 Query: 484 LTGEEIEKLLKYIQNITLKNREPASPGESDQPVREEAALGRLKSYKGILDETVSLLERFR 543 LT E ++L ++Q ++ R+ A E ++ V E + +L S K LDE VSL+ RF Sbjct: 475 LTQAETDRLRVFVQTGLIQKRDGALTKE-EKAVSEASTFEQLVSLKTTLDEMVSLIRRFE 533 Query: 544 FHPLDNTGLSLSRTLAGTLELLNGSGVVGDAGIVLERLLERERMASQVIPDTGLALFHTR 603 + L L GV+ ++G+V ERL++RE+ SQ+IP T +ALFHTR Sbjct: 534 VIQIKEKSGVLPVILEEACTREEAKGVLTNSGLVAERLMQREQSGSQMIPGTAVALFHTR 593 Query: 604 SSHVHMSSLTLYRLSQPVLLEGGTEVRV--ILLMLAPRRLSRESLEVLSEISAXXXXXXX 661 + SL+LYRL P+ LE + R+ LLMLAPR L++E+LEVLSEISA Sbjct: 594 GEEITRPSLSLYRLEDPLTLEMASPSRLSHFLLMLAPRTLTKEALEVLSEISAMLLDTVM 653 Query: 662 XXXXXXRTEPEIRQYLSSELLHFFENK 688 E EIR YL+ L FF K Sbjct: 654 IDLLEAGNEAEIRDYLTIHLRMFFNIK 680 >C0Z8I8.1 C0Z8I8_BREBN Transcriptional regulator Length = 701 Score = 366 bits (940), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 236/699 (33%), Positives = 367/699 (52%), Gaps = 20/699 (2%) Query: 5 ITARQRQILWILLGVKXXXXXXXXXXSTGVSVRTVHREMEDIERLLGDFRLDLIRKSGKG 64 +++RQR I+ ILL + GVS RTVHRE++ ++ L +F L+L+RK+G G Sbjct: 3 VSSRQRSIIEILLKEQKGVTVGSIAEQIGVSGRTVHRELDALDSLFEEFELELVRKTGSG 62 Query: 65 IXXXXXXXXXXXXXXXXXXXKPAEYSGEDRKIYELCTLLEAEEPVKLFTLAHSLKVTVAT 124 + EY+ ++RK LC LLEA EPVKL +LA LKVT AT Sbjct: 63 LEVVGTDDQKSALRMSVLHHMTKEYTAQERKAIILCALLEASEPVKLISLAIDLKVTTAT 122 Query: 125 ISYDLDELEPWVRKFGLELVRRRGYGVEITGQEADKRRAICRLAAEYLDLSDLVGHTPRT 184 IS+DLD+LE + ++ L L+R+RGYGVE+ G E+ KRRAI RL AE+LD +L+G Sbjct: 123 ISHDLDDLETMLARYDLSLLRKRGYGVELQGTESSKRRAISRLIAEHLDDHELIGIIKEN 182 Query: 185 ESNPVFR-------LLLTTVGKVSLMTVESILWDMEWKWTAELPEIVYMEMLLGLAVTTR 237 N R LL + + L+ VE+ L ++ + L + Y+ ++ LA+ Sbjct: 183 IQNKALRDIDSIAERLLGLIDREKLIKVENALSHLDEELPYPLADSAYLGLVTHLALAME 242 Query: 238 RIEIGRGINSSEEAGFSRVSDHRSIAGAEQFAKRLEAALGQEFARAEILYMAGLFDRVQE 297 RIE G GI+ E S ++ A +RL+ E EI Y+ + Sbjct: 243 RIEKGEGIHFDEHT-LSELNGTPEYEIASNIMERLKQIFQMEIPADEIGYITMHLRGAKL 301 Query: 298 SFSSSGVAYG-DMELMEIVYRLTESVAKRTGLPFERDRSLREGLLEHMDPALKRIREGTR 356 S + + ELM I R ++ +R +P D SL GLL H++PAL R++ Sbjct: 302 RHSPDDQVWPENTELMVITKRFIQACEERLDIPLSNDASLFHGLLTHLEPALYRLQRKME 361 Query: 357 IRNPLLGPIRKDYDYLFTIVRAAAQDIQLELTIPDEEIGFLVMHFGASMERLNQLKRSVR 416 IRNP+L I+++Y LF + A I EL +PDEEIG+LVMH GA++ER ++ R Sbjct: 362 IRNPILEQIKQNYPELFAVTSEAVHTILPELRVPDEEIGYLVMHLGAALERTRHEQQWYR 421 Query: 417 AILVCXXXXXXXXXXXXXXXKEMPQIEVLGNISWYEAARLPGTDYDLIISTIDLPIDKER 476 A++VC KE+P+I L N+S ++ +P TDYDLIIST+ LP+D Sbjct: 422 ALVVCSSGIGSSKILATRIKKEIPEIVSLKNLSMFDLEEVPATDYDLIISTLPLPLDPAE 481 Query: 477 YIKISPLLTGEEIEKLLKYIQNITLK--NREPASPGESDQPVREEAALGRLKSYKGILDE 534 Y+ +SPLL ++I+K+ + + K ++E + P + Q E+ L ++ Y +E Sbjct: 482 YVVVSPLLPPDDIQKIKYQLHTTSQKQSHQEKSQPVPAGQQSIEQ--LRAMQYYTAYANE 539 Query: 535 TVSLLERFRFHPLDNTGLSLSRTLAGTLELLNGSGVVGDAGIVLERLLERERMASQVIPD 594 L R+ DN +++ L+ ++ G + + V+++L+ERE++ IP Sbjct: 540 LYDGLWGMRW---DNRDQDIAQLLSQIIKRQKERGTIEEVEPVVKQLIEREKLGGLGIPG 596 Query: 595 TGLALFHTRSSHVHMSSLTLYRLSQPVLLEGGTE----VRVILLMLAPRRLSRESLEVLS 650 T LALFH R+ V+ +S T ++L +PVLL E + ++LL+L P+ + +E LEVLS Sbjct: 597 TSLALFHGRNEAVNKASFTFHQLREPVLLRSMDEEVISIDMLLLLLGPKEVPKEGLEVLS 656 Query: 651 EISAXXXXXXXXXXXXXRTEPEIRQYLSSELLHFFENKM 689 EIS+ +I Y++ ++ F K+ Sbjct: 657 EISSLLIEEEMQAVLKTGETQQIADYIAGKMYAFCLKKI 695 >Q45419.1 Q45419_BACST MtlR protein Length = 697 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 224/703 (31%), Positives = 351/703 (49%), Gaps = 40/703 (5%) Query: 5 ITARQRQILWILLGVKXXXXXXXXXXSTGVSVRTVHREMEDIERLLGDFRLDLIRKSGKG 64 I+AR+R+IL ILL VS RT+HR+++ IER+L D+ L L++K+G G Sbjct: 3 ISARERKILDILLSNDEGTTVGELAEQLDVSNRTIHRDLKGIERILKDYGLQLVKKAGVG 62 Query: 65 IXXXXXXXXXXXXXXXXXXXKPAEYSGEDRKIYELCTLLEAEEPVKLFTLAHSLKVTVAT 124 I EY+ E+R++ L LLEA EPVKL +LA+ L VTVAT Sbjct: 63 IRVIGEEKKKKELALHLFHLSHKEYTPEERQVIILIALLEATEPVKLLSLANDLNVTVAT 122 Query: 125 ISYDLDELEPWVRKFGLELVRRRGYGVEITGQEADKRRAICRLAAEYLD---LSDLVGHT 181 IS+DLD++ + K+GL L+R+RGYGVEI G E+ KRR + L ++D L+ + Sbjct: 123 ISHDLDKINQMIEKYGLSLIRKRGYGVEIAGSESAKRRMMSELLFHHVDEHEFLSLMKES 182 Query: 182 PRTES----NPVFRLLLTTVGKVSLMTVESILWDMEWKWTAELPEIVYMEMLLGLAVTTR 237 + +S N V LL + K L+T+E + ++ + + + Y+ +++ LA+ Sbjct: 183 IQKKSIDKLNTVTEKLLGLIDKKKLVTIEQQIERIKEELPFTIADSSYIALVVHLALAIE 242 Query: 238 RIEIGRGINSSEEAGFSRVSDHRSIAGAEQFAKRLEAALGQEFARAEILYM------AGL 291 RI G IN ++ + + AE+ A+ LE A + EI Y+ A L Sbjct: 243 RISQGESINFDQQY-LETIQTTKEYETAEKIARSLEHAFRITIPKEEIGYITMHLMGAKL 301 Query: 292 FDRVQESFSSSGVAYGDMELMEIVYRLTESVAKRTGLPFERDRSLREGLLEHMDPALKRI 351 DR + G ++ E++ V+ + D +L E L+ H+ PAL RI Sbjct: 302 RDRQGYMLEEASFEVG-IKAQELI----RFVSAELHVDITNDYTLYEDLVVHLKPALYRI 356 Query: 352 REGTRIRNPLLGPIRKDYDYLFTIVRAAAQDIQLELTIPDEEIGFLVMHFGASMERLNQL 411 + I NPLL I +DY LF ++ + + ++T+P EEIG+LV+HF A++ R Sbjct: 357 QHNMGIANPLLEKIVQDYPELFAVLEKGVKQVFPDVTVPKEEIGYLVLHFAAALLR---E 413 Query: 412 KRSVRAILVCXXXXXXXXXXXXXXXKEMPQIEVLGNISWYEAARLPGTDYDLIISTIDLP 471 K+ +RA+++C KE+P I + IS +E T YDLI+ST+ P Sbjct: 414 KKGLRALVICSSGLGTAKILATRLKKEIPDIVHMEQISVFELRNTDVTRYDLIVSTV--P 471 Query: 472 ID--KERYIKISPLLTGEEIEKLLKYIQNITLKNREPASPGE--SDQPVREEAALGRLKS 527 ID + Y +SP+L EE+ + ++ LK+R S E D R + ++ S Sbjct: 472 IDGLAKPYFVVSPMLREEEVLSIKQF-----LKSRNAVSRKEDVDDAVARSHDVIKKMDS 526 Query: 528 YKGILDETVSLLERFRFHPLDNTGLSLSRTLAGTLELLNGSGVVGDAGIVLERLLERERM 587 + + + + +LE F + G S+ LA L G++ ++ VL LL RE + Sbjct: 527 IQKLSETILRILEGFTLEQVQ--GHSIKEVLAEACHQLWQKGIIRNSEKVLTELLRRETL 584 Query: 588 ASQVIPDTGLALFHTRSSHVHMSSLTLYRLSQPVLLEGGTE----VRVILLMLAPRRLSR 643 IP+T LAL+HTRS V S T+YRL+ ++G + V +LL+LAP S+ Sbjct: 585 GGLGIPETSLALYHTRSPAVVFPSFTIYRLTDCQTIKGMDDQPMVVNTVLLLLAPDSPSQ 644 Query: 644 ESLEVLSEISAXXXXXXXXXXXXXRTE-PEIRQYLSSELLHFF 685 E L VLS IS+ + + ++ +LS L FF Sbjct: 645 EMLSVLSHISSLVIKDEDSMALFAKGDRQQVYSFLSHHLEKFF 687 >Q9K679.1 Q9K679_BACHD Transcriptional antiterminator Length = 700 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 214/666 (32%), Positives = 334/666 (50%), Gaps = 26/666 (3%) Query: 5 ITARQRQILWILLGVKXXXXXXXXXXSTGVSVRTVHREMEDIERLLGDFRLDLIRKSGKG 64 I+AR+R IL LL K VS RT+ R+++ IE +L ++ L L KS G Sbjct: 3 ISARERNILHQLLQHKDGLTIPKLAQLLDVSTRTIQRDLKGIEDILAEYGLKL-NKSSAG 61 Query: 65 IXXXXXXXXXXXXXXXXXXXKPAEYSGEDRKIYELCTLLEAEEPVKLFTLAHSLKVTVAT 124 + + E++ E+R++ L LL+ EP+KLFTLA L VTVAT Sbjct: 62 LVISGGPSEQEKLLGFLQTLELNEFTPEERQMLLLAILLQHREPLKLFTLADELNVTVAT 121 Query: 125 ISYDLDELEPWVRKFGLELVRRRGYGVEITGQEADKRRAICRLAAEYLDLSDLVGHTPRT 184 IS DL E W+ F LELVR+RGYGV+I G+E+D RRAI +L AE+L S + Sbjct: 122 ISNDLTRAEAWLNGFRLELVRKRGYGVQIIGRESDIRRAISQLLAEHLTESKMYRMLSEP 181 Query: 185 -----ESNPVFRLLLTTVGKVSLMTVESILWDMEWKWTAELPEIVYMEMLLGLAVTTRRI 239 +++ + LL + + ++ +L D + + + Y+ +++ L + RI Sbjct: 182 LDDWEQTDAISERLLHLINLELVRNIQEVLADFRKQMVEPMADRAYIGLIVHLTLAIERI 241 Query: 240 EIGRGINSSEEAGFSRVSDHRSIAGAEQFAKRLEAALGQEFARAEILYMAGLFDRVQESF 299 G I + + S++ + A A+RLE LG AE+ YM + Sbjct: 242 RQGEKIE-IDPSYLSKLKMDKEFELAADLARRLEQKLGMNIPEAEVGYMTMHIRGAKAHI 300 Query: 300 -SSSGVAYGDMELMEIVYRLTESVAKRTGLPFERDRSLREGLLEHMDPALKRIREGTRIR 358 + S + + +L V L V K + F+ D SL +GL+ H+ PAL RIRE +I Sbjct: 301 ETESLLEESNFQLGVRVKALIHEVEKSLHVQFQ-DPSLFQGLVAHLKPALYRIREKMKIY 359 Query: 359 NPLLGPIRKDYDYLFTIVRAAAQDIQLELTIPDEEIGFLVMHFGASMERLNQLKRSVRAI 418 NPLL I++DY+ LF +V+ + +TIP+EE GFLVMHFG+++ERL + KR+++ + Sbjct: 360 NPLLEKIKQDYEELFHVVQVKGNKVFEPITIPEEEAGFLVMHFGSALERLKR-KRTLKVL 418 Query: 419 LVCXXXXXXXXXXXXXXXKEMPQIEVLGNISWYEAARLPGTDYDLIISTIDLPIDKERYI 478 +VC KE P+I + S++E DYDL +STI L D + ++ Sbjct: 419 VVCSSGIGSSKFLASRIEKEFPEIASIEQASFFELGEKNLHDYDLFLSTIPLHADVKHFV 478 Query: 479 KISPLLTGEEIEKLLKYIQNITLKNREPASPGESDQPVREEA-------ALGRLKSYKGI 531 + P L E++++ Y+ K REP++ E+ Q + A A+ R + + Sbjct: 479 -VQPFLPPHEVKQIRAYLDE---KLREPSAVTETGQASLQVAEGGSNVLAIERFAHFAKL 534 Query: 532 LDETVSLLERFRFHPLDNTGLSLSRTLAGTLELLNGSGVVGDAGIVLERLLERERMASQV 591 + +L F+ ++ G+S+ + L G++ + G V + L+ERER Sbjct: 535 NQDIYQVLSHFQLIQVER-GISIEEGIERICRSLEKKGILTNGGGVAQALIERERAGGVA 593 Query: 592 IPDTGLALFHTRSSHVHMSSLTLYRLSQPVLLEGGTE----VRVILLMLAPRRLSRESLE 647 IP+T LALFHTRS V + +Y P L +G V ++LMLAP+ L LE Sbjct: 594 IPNTSLALFHTRSRDVTIPYFAMYEWGTPSLRKGMDNSLILVERVVLMLAPQDLEEVRLE 653 Query: 648 VLSEIS 653 LS +S Sbjct: 654 YLSHLS 659 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,516,558,952 Number of extensions: 136403142 Number of successful extensions: 328560 Number of sequences better than 1.0e-05: 727 Number of HSP's gapped: 327361 Number of HSP's successfully gapped: 733 Length of query: 689 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 546 Effective length of database: 1,713,491,058 Effective search space: 935566117668 Effective search space used: 935566117668 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)