BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0025.p (389 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFV1.1 B3KFV1_9BACI S-layer domain 322 4e-86 B7YAZ5.1 B7YAZ5_9BACI Putative uncharacterized protein 321 6e-86 C3J1S5.1 C3J1S5_9BACI Putative uncharacterized protein 321 9e-86 B3CC04.1 B3CC04_9BACE Putative uncharacterized protein 312 4e-83 Q8A993.1 Q8A993_BACTN S-layer domain containing protein 311 5e-83 >B3KFV1.1 B3KFV1_9BACI S-layer domain Length = 387 Score = 322 bits (825), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 157/359 (43%), Positives = 237/359 (66%), Gaps = 1/359 (0%) Query: 31 AAAAGTVELYTPYVELSAAPGESVSYPVDVINHGTATQKVGLSFDAGGNFWKYELTAGGR 90 A AAG + LYTPY +S PGE ++YP++V N+ + V L ++ + W +L GG Sbjct: 30 ALAAGEITLYTPYTSISVPPGEVINYPLEVKNNTNSVITVPLQINSLPSGWSTKLNGGGW 89 Query: 91 QVQQLAVKGGDTQSVNLQLEVPLKINKGSYTFAVNAPGQDSLTLKVNVSEQGTFKTELAV 150 Q+++++VK G+++SV L++ VPLK++KGSY F ++A SL L V+++E+GT++TEL Sbjct: 90 QLKEVSVKPGESESVTLEVTVPLKVDKGSYRFQLSAGSMASLQLTVDITEKGTYQTELTT 149 Query: 151 DQSNMEGHSDTTFTYSAVLRNHTAQKQSYALAAQAADGWDVRIKADGNSVTSVALEAGAE 210 DQ+N+EGH+D+TFTY+ L+N TA KQ+YAL+A A GWDV + G V+SV +EAGA Sbjct: 150 DQANLEGHADSTFTYTVNLQNRTANKQNYALSADAQAGWDVTFTSGGKQVSSVEIEAGAS 209 Query: 211 KNISIEAKPPEQVKAGTYKIPVTATSGSTSTQAELEAVVTGTYGIQLSTSDNLLSTDVKA 270 ++I+++ KPP +V GT+ IP+ A++ STS+ LEAV+TG+YG++L+T LLST+V A Sbjct: 210 QSITVDVKPPAEVTEGTFSIPIRASNSSTSSDLALEAVITGSYGLELTTPSGLLSTNVNA 269 Query: 271 GGERRINLVITNTGSAPLEDVSLTSQGTPTGWEVSFDPSTVRTIAPGETATTQAIIKSSG 330 GG + I L++ NTG+APL D++L++ TP WEVSF+P T+ + G++ T +A + SS Sbjct: 270 GGSKTIELLVKNTGTAPLSDINLSAD-TPVDWEVSFNPKTIENLPAGKSTTVEAKLTSSD 328 Query: 331 NSLPGDYVVTLXXXXXXXXXXXDMRVTVKTSVFWGWXXXXXXXXXXXXXXXXFRKFGRR 389 ++ GDYV +L RV VK S+ WGW RK+GRR Sbjct: 329 KAIAGDYVTSLKAAAAEASSDAQFRVAVKGSMLWGWIGVLVILAILGGIYVLIRKYGRR 387 >B7YAZ5.1 B7YAZ5_9BACI Putative uncharacterized protein Length = 388 Score = 321 bits (823), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 165/364 (45%), Positives = 231/364 (63%), Gaps = 5/364 (1%) Query: 29 PKAAAAGTVELYTPYVELSAAPGESVSYPVDVINHGTATQKVGLSFDAGGNFWKYELTAG 88 P +AA+G V L+TPY LS PGE++ Y V+VIN+G+ + V SFD W +TA Sbjct: 27 PASAASGVV-LFTPYTGLSVTPGETIDYTVNVINNGSNIENVTFSFDHLPKGWATSITAE 85 Query: 89 GRQVQQLAVKGGDTQSVNLQLEVPLKINKGSYTFAVNAPGQD---SLTLKVNVSEQGTFK 145 GR ++QL+V+GG + V L++ VPL +KG Y F + A G+ L L V V+EQG+FK Sbjct: 86 GRTIEQLSVRGGKEEEVTLEVTVPLDADKGDYRFWLVAKGESGSSKLPLLVRVTEQGSFK 145 Query: 146 TELAVDQSNMEGHSDTTFTYSAVLRNHTAQKQSYALAAQAADGWDVRIKADGNSVTSVAL 205 TEL +Q+N+EGH+D++FTY L+N TA+ Q+YAL++ A GW V K++GNSVTSV L Sbjct: 146 TELTSEQTNLEGHADSSFTYDVTLKNRTAKTQNYALSSAAEKGWQVTFKSEGNSVTSVKL 205 Query: 206 EAGAEKNISIEAKPPEQVKAGTYKIPVTATSGSTSTQAELEAVVTGTYGIQLSTSDNLLS 265 E ++I++E KPPE VKAGTYKIP+ A + TS + LEAV+TGTY ++L+T LS Sbjct: 206 EPNESRDITVEVKPPENVKAGTYKIPIKAQTSDTSAELTLEAVITGTYALKLTTPSGNLS 265 Query: 266 TDVKAGGERRINLVITNTGSAPLEDVSLTSQGTPTGWEVSFDPSTVRTIAPGETATTQAI 325 TDV AG ER I+LV+ NTGSAPL ++++T+ P WEV FD ST+ + PG++ T +A Sbjct: 266 TDVTAGHERVIDLVVKNTGSAPLLNINMTADA-PPDWEVEFDQSTIAQLNPGDSKTVKAK 324 Query: 326 IKSSGNSLPGDYVVTLXXXXXXXXXXXDMRVTVKTSVFWGWXXXXXXXXXXXXXXXXFRK 385 +K+S ++ GDYVV R++VKTS WG + Sbjct: 325 VKASDEAIAGDYVVNFQAQTAETSAEAAFRISVKTSTVWGVVAVLIILGVAGGLYYLIKT 384 Query: 386 FGRR 389 +GRR Sbjct: 385 YGRR 388 >C3J1S5.1 C3J1S5_9BACI Putative uncharacterized protein Length = 379 Score = 321 bits (822), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 165/364 (45%), Positives = 231/364 (63%), Gaps = 5/364 (1%) Query: 29 PKAAAAGTVELYTPYVELSAAPGESVSYPVDVINHGTATQKVGLSFDAGGNFWKYELTAG 88 P +AA+G V L+TPY LS PGE++ Y V+VIN+G+ + V SFD W +TA Sbjct: 18 PASAASGVV-LFTPYTGLSVTPGETIDYTVNVINNGSNIENVTFSFDHLPKGWATSITAE 76 Query: 89 GRQVQQLAVKGGDTQSVNLQLEVPLKINKGSYTFAVNAPGQD---SLTLKVNVSEQGTFK 145 GR ++QL+V+GG + V L++ VPL +KG Y F + A G+ L L V V+EQG+FK Sbjct: 77 GRTIEQLSVRGGKEEEVTLEVTVPLDADKGDYRFWLVAKGESGSSKLPLLVRVTEQGSFK 136 Query: 146 TELAVDQSNMEGHSDTTFTYSAVLRNHTAQKQSYALAAQAADGWDVRIKADGNSVTSVAL 205 TEL +Q+N+EGH+D++FTY L+N TA+ Q+YAL++ A GW V K++GNSVTSV L Sbjct: 137 TELTSEQTNLEGHADSSFTYDVTLKNRTAKTQNYALSSAAEKGWQVTFKSEGNSVTSVKL 196 Query: 206 EAGAEKNISIEAKPPEQVKAGTYKIPVTATSGSTSTQAELEAVVTGTYGIQLSTSDNLLS 265 E ++I++E KPPE VKAGTYKIP+ A + TS + LEAV+TGTY ++L+T LS Sbjct: 197 EPNESRDITVEVKPPENVKAGTYKIPIKAQTSDTSAELTLEAVITGTYALKLTTPSGNLS 256 Query: 266 TDVKAGGERRINLVITNTGSAPLEDVSLTSQGTPTGWEVSFDPSTVRTIAPGETATTQAI 325 TDV AG ER I+LV+ NTGSAPL ++++T+ P WEV FD ST+ + PG++ T +A Sbjct: 257 TDVTAGHERVIDLVVKNTGSAPLLNINMTADA-PPDWEVEFDQSTIAQLNPGDSKTVKAK 315 Query: 326 IKSSGNSLPGDYVVTLXXXXXXXXXXXDMRVTVKTSVFWGWXXXXXXXXXXXXXXXXFRK 385 +K+S ++ GDYVV R++VKTS WG + Sbjct: 316 VKASDEAIAGDYVVNFQAQTAETSAEAAFRISVKTSTVWGVVAVLIILGVAGGLYYLIKT 375 Query: 386 FGRR 389 +GRR Sbjct: 376 YGRR 379 >B3CC04.1 B3CC04_9BACE Putative uncharacterized protein Length = 382 Score = 312 bits (799), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 159/354 (44%), Positives = 221/354 (62%), Gaps = 2/354 (0%) Query: 36 TVELYTPYVELSAAPGESVSYPVDVINHGTATQKVGLSFDAGGNFWKYELTAGGRQVQQL 95 +V LY+PY ++S +PG S+ Y +D+IN+ A LS WK EL +GG + +L Sbjct: 31 SVFLYSPYTKISVSPGTSIDYKIDLINNSDAPVNADLSVTGLPASWKRELKSGGWNINKL 90 Query: 96 AVKGGDTQSVNLQLEVPLKINKGSYTFAVNAPGQDSLTLKVNVSEQGTFKTELAVDQSNM 155 AV + + NL+LEVPLKINKGSY F V A G L L V V++QGT++TE DQ NM Sbjct: 91 AVLPNEKKDFNLKLEVPLKINKGSYNFTVFA-GDCQLPLTVTVAQQGTYQTEFTTDQPNM 149 Query: 156 EGHSDTTFTYSAVLRNHTAQKQSYALAAQAADGWDVRIKADGNSVTSVALEAGAEKNISI 215 +G+S +TFT++AVL+N TA +Q YAL + A GW+V K + TS +EA A +N+SI Sbjct: 150 QGNSKSTFTFNAVLKNQTADQQLYALMSNAPRGWNVIFKPNYKQATSAQVEANASQNVSI 209 Query: 216 EAKPPEQVKAGTYKIPVTATSGSTSTQAELEAVVTGTYGIQLSTSDNLLSTDVKAGGERR 275 + PP V+AG YKI V A +G+TS +LE VVTGTY ++L+T LLST++ AG +R Sbjct: 210 DVTPPANVEAGNYKISVRAVAGNTSADLDLEVVVTGTYQMELTTPRGLLSTEITAGDVKR 269 Query: 276 INLVITNTGSAPLEDVSLTSQGTPTGWEVSFDPSTVRTIAPGETATTQAIIKSSGNSLPG 335 + LV+ NTGS+ L+D+ L+S G PT WEVSF+P+ + + GET T A++K+S +LPG Sbjct: 270 LELVVRNTGSSLLKDIQLSS-GKPTDWEVSFEPAKIEMLKAGETTTVTAVMKASKKALPG 328 Query: 336 DYVVTLXXXXXXXXXXXDMRVTVKTSVFWGWXXXXXXXXXXXXXXXXFRKFGRR 389 DY+ T+ R+ VKT + WGW FRK+GRR Sbjct: 329 DYIATMEARTPEVNATAQFRIAVKTPMLWGWVGILVIVVAVGGVYYLFRKYGRR 382 >Q8A993.1 Q8A993_BACTN S-layer domain containing protein Length = 383 Score = 311 bits (798), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 159/366 (43%), Positives = 230/366 (62%), Gaps = 7/366 (1%) Query: 24 SNAGLPKAAAAGTVELYTPYVELSAAPGESVSYPVDVINHGTATQKVGLSFDAGGNFWKY 83 +N +PK +V LYTPY ++S +PG S+ Y +D+IN+ LS + WK+ Sbjct: 25 ANDSIPK-----SVILYTPYTKISVSPGASIDYSIDLINNTDKLVNANLSVSGLSSSWKH 79 Query: 84 ELTAGGRQVQQLAVKGGDTQSVNLQLEVPLKINKGSYTFAVNAPGQDSLTLKVNVSEQGT 143 E+ +GG + QLAV + ++ NL+++VPLK+++GSY F V+A G+ L L V V++QGT Sbjct: 80 EMKSGGWNLSQLAVLPKEKKTFNLKVDVPLKVSRGSYHFVVSA-GEAQLPLNVVVAQQGT 138 Query: 144 FKTELAVDQSNMEGHSDTTFTYSAVLRNHTAQKQSYALAAQAADGWDVRIKADGNSVTSV 203 ++TE DQ NM+G+S +TFT++A L+N TA +Q YAL A+A GW+V K + TS Sbjct: 139 YQTEFTTDQPNMQGNSKSTFTFNATLKNQTADQQLYALMAKAPRGWNVIFKPNYKQATSA 198 Query: 204 ALEAGAEKNISIEAKPPEQVKAGTYKIPVTATSGSTSTQAELEAVVTGTYGIQLSTSDNL 263 +EA + +N+SI+ PP V+AG+YKIPV A +G+TS + ELE VVTG+Y ++L+T L Sbjct: 199 QVEANSSQNVSIDITPPANVEAGSYKIPVRAATGNTSAELELEVVVTGSYQMELTTPRGL 258 Query: 264 LSTDVKAGGERRINLVITNTGSAPLEDVSLTSQGTPTGWEVSFDPSTVRTIAPGETATTQ 323 LS+DV AG +RI L I NTGS+ L+D+ L S P W+V+F+PS + + GETAT Sbjct: 259 LSSDVTAGDTKRIELEIKNTGSSLLKDIQL-SANKPVDWDVAFEPSKIEMLKAGETATVV 317 Query: 324 AIIKSSGNSLPGDYVVTLXXXXXXXXXXXDMRVTVKTSVFWGWXXXXXXXXXXXXXXXXF 383 AI+K+S +LPGDYV T+ R+ VKT + WGW F Sbjct: 318 AILKASKKALPGDYVTTMMAKTPEVNADAQFRIAVKTPMIWGWVGVLIILATIGVVYYLF 377 Query: 384 RKFGRR 389 RK+GRR Sbjct: 378 RKYGRR 383 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.126 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,991,839,805 Number of extensions: 77848095 Number of successful extensions: 222191 Number of sequences better than 1.0e-05: 49 Number of HSP's gapped: 222074 Number of HSP's successfully gapped: 50 Length of query: 389 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 251 Effective length of database: 1,760,596,133 Effective search space: 441909629383 Effective search space used: 441909629383 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 132 (55.5 bits)