BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0024.p (348 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3J1S6.1 C3J1S6_9BACI ABC transporter related 357 8e-97 B7YAZ6.1 B7YAZ6_9BACI ABC transporter related protein 357 8e-97 Q9K7Z3.1 Q9K7Z3_BACHD ABC transporter (ATP-binding protein) 328 4e-88 Q8R8X3.1 Q8R8X3_THETN ABC-type multidrug transport system, ATPas... 320 1e-85 B3KFV0.1 B3KFV0_9BACI ABC transporter related 316 2e-84 >C3J1S6.1 C3J1S6_9BACI ABC transporter related Length = 318 Score = 357 bits (916), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 182/320 (56%), Positives = 231/320 (72%), Gaps = 14/320 (4%) Query: 29 VIELNGLTKQYGTFTAVDGLSLAIRKGEVFGLLGPNGAGKTTTILMMLGLTERTSGSALI 88 VIEL+ L K YG AVD LSL+I+KGE+FGLLGPNGAGKTTTILMMLG TE TSGS + Sbjct: 6 VIELDNLCKTYGDHRAVDHLSLSIQKGEIFGLLGPNGAGKTTTILMMLGFTEPTSGSVRV 65 Query: 89 CGYDPARYALQVKRRVGYMPDDIGFYEDRTGLDNLIYTARLNGIEAEEAERSAKRLLEKV 148 CG DP R ++VKR+VGY+PDD+GFY TGL+NL+YTA LNGI EAE+ A LLEKV Sbjct: 66 CGIDPVRNPIEVKRKVGYLPDDVGFYHHMTGLENLLYTAALNGIPRAEAEKRAWELLEKV 125 Query: 149 GLSGSARAKVGTYSRGMRQRLGLADVLIKNPEVIILDEPTLGIDPEGVRELLVLISDLSR 208 L+ +A K G YSRGMRQRLGLADVL+K PEVIILDEPTLGIDPEGVRELL LI +LSR Sbjct: 126 NLTDAAHKKAGKYSRGMRQRLGLADVLMKRPEVIILDEPTLGIDPEGVRELLRLIRNLSR 185 Query: 209 NEGITXXXXXXXXXXXXXICDRVGLFVKGRLIACGDIATLSRELNQELRFEVELVVQPWS 268 +EGIT ICDRVGLFV GRL+A G+I L+++L + + + +V P Sbjct: 186 HEGITVLLSSHQLHHVQQICDRVGLFVGGRLLAEGNIERLAQQLFLQDAYVIHVVASPLD 245 Query: 269 AELAGRLQAIEGVQRME-TED-WKGENAPPGSVLATLTCDRNLTSAIAAQVIQSGAELYF 326 A L +++AI GV ++E TE+ W + C ++++AI+ +I+SG+ L+ Sbjct: 246 ASLRSKIEAIPGVNKVEQTENGWD------------VYCQTDVSAAISQTIIESGSSLFH 293 Query: 327 ITRKEFGLDEIYHRYFERKE 346 ++R++FGLDEIYHRYFE ++ Sbjct: 294 LSRRDFGLDEIYHRYFEGRD 313 >B7YAZ6.1 B7YAZ6_9BACI ABC transporter related protein Length = 318 Score = 357 bits (916), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 182/320 (56%), Positives = 231/320 (72%), Gaps = 14/320 (4%) Query: 29 VIELNGLTKQYGTFTAVDGLSLAIRKGEVFGLLGPNGAGKTTTILMMLGLTERTSGSALI 88 VIEL+ L K YG AVD LSL+I+KGE+FGLLGPNGAGKTTTILMMLG TE TSGS + Sbjct: 6 VIELDNLCKTYGDHRAVDHLSLSIQKGEIFGLLGPNGAGKTTTILMMLGFTEPTSGSVRV 65 Query: 89 CGYDPARYALQVKRRVGYMPDDIGFYEDRTGLDNLIYTARLNGIEAEEAERSAKRLLEKV 148 CG DP R ++VKR+VGY+PDD+GFY TGL+NL+YTA LNGI EAE+ A LLEKV Sbjct: 66 CGIDPVRNPIEVKRKVGYLPDDVGFYHHMTGLENLLYTAALNGIPRAEAEKRAWELLEKV 125 Query: 149 GLSGSARAKVGTYSRGMRQRLGLADVLIKNPEVIILDEPTLGIDPEGVRELLVLISDLSR 208 L+ +A K G YSRGMRQRLGLADVL+K PEVIILDEPTLGIDPEGVRELL LI +LSR Sbjct: 126 NLTDAAHKKAGKYSRGMRQRLGLADVLMKRPEVIILDEPTLGIDPEGVRELLRLIRNLSR 185 Query: 209 NEGITXXXXXXXXXXXXXICDRVGLFVKGRLIACGDIATLSRELNQELRFEVELVVQPWS 268 +EGIT ICDRVGLFV GRL+A G+I L+++L + + + +V P Sbjct: 186 HEGITVLLSSHQLHHVQQICDRVGLFVGGRLLAEGNIERLAQQLFLQDAYVIHVVASPLD 245 Query: 269 AELAGRLQAIEGVQRME-TED-WKGENAPPGSVLATLTCDRNLTSAIAAQVIQSGAELYF 326 A L +++AI GV ++E TE+ W + C ++++AI+ +I+SG+ L+ Sbjct: 246 ASLRSKIEAIPGVNKVEQTENGWD------------VYCQTDVSAAISQTIIESGSSLFH 293 Query: 327 ITRKEFGLDEIYHRYFERKE 346 ++R++FGLDEIYHRYFE ++ Sbjct: 294 LSRRDFGLDEIYHRYFEGRD 313 >Q9K7Z3.1 Q9K7Z3_BACHD ABC transporter (ATP-binding protein) Length = 318 Score = 328 bits (841), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 162/320 (50%), Positives = 220/320 (68%), Gaps = 13/320 (4%) Query: 29 VIELNGLTKQYGTFTAVDGLSLAIRKGEVFGLLGPNGAGKTTTILMMLGLTERTSGSALI 88 +I+LN +TK+Y AVD LSL+IRKGE+FGLLGPNGAGKTT+ILMMLGL+E TSG+ + Sbjct: 5 IIKLNEITKRYDDHYAVDHLSLSIRKGEIFGLLGPNGAGKTTSILMMLGLSEPTSGTVQV 64 Query: 89 CGYDPARYALQVKRRVGYMPDDIGFYEDRTGLDNLIYTARLNGIEAEEAERSAKRLLEKV 148 G D +Y ++VKR+VGY+PD++GFY D TG++NL+YTA LNGI+ EA A LLEKV Sbjct: 65 AGIDSTKYPIEVKRKVGYLPDNVGFYPDMTGMENLLYTASLNGIQKIEAIERANTLLEKV 124 Query: 149 GLSGSARAKVGTYSRGMRQRLGLADVLIKNPEVIILDEPTLGIDPEGVRELLVLISDLSR 208 GL+ +A+ K G YSRGM+QRLGLADVL+K PE+IILDEPTLGIDPEGVR+ L LI +L++ Sbjct: 125 GLTEAAKKKTGQYSRGMKQRLGLADVLMKGPEIIILDEPTLGIDPEGVRDFLHLIRNLNQ 184 Query: 209 NEGITXXXXXXXXXXXXXICDRVGLFVKGRLIACGDIATLSRELNQELRFEVELVVQPWS 268 NE +T +CDRVG+FV G+L+A GD+ L + L + + + P Sbjct: 185 NENLTVLLCSHHLHQVQQVCDRVGIFVDGKLLAYGDLDQLVKRLFKHESVVIHVAASPID 244 Query: 269 AELAGRLQAIEGVQRMET--EDWKGENAPPGSVLATLTCDRNLTSAIAAQVIQSGAELYF 326 L +L+ IE V+ ++ ED + C + ++ I+ +++SG+ LY Sbjct: 245 ESLLNQLKTIEQVKNVDVIQEDR-----------LDIYCREDASATISKLIVESGSNLYH 293 Query: 327 ITRKEFGLDEIYHRYFERKE 346 + +K FGLDEIYHRYFE +E Sbjct: 294 LYKKHFGLDEIYHRYFEGRE 313 >Q8R8X3.1 Q8R8X3_THETN ABC-type multidrug transport system, ATPase component Length = 312 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 163/315 (51%), Positives = 216/315 (68%), Gaps = 10/315 (3%) Query: 29 VIELNGLTKQYGTFTAVDGLSLAIRKGEVFGLLGPNGAGKTTTILMMLGLTERTSGSALI 88 VIEL GLTK YGT AVD L L I++GEVFGLLGPNGAGKTTTILM+LGL E T G + Sbjct: 5 VIELKGLTKIYGTQPAVDHLDLEIKRGEVFGLLGPNGAGKTTTILMILGLVEPTEGEVKV 64 Query: 89 CGYDPARYALQVKRRVGYMPDDIGFYEDRTGLDNLIYTARLNGIEAEEAERSAKRLLEKV 148 G + R L+VK+ VGY+P+D+GFYED TGL+NL TA LNG+E +EA ++A+ LLEKV Sbjct: 65 LGINSTREPLKVKKWVGYLPEDVGFYEDMTGLENLKLTAALNGMEEKEAVKAAEELLEKV 124 Query: 149 GLSGSARAKVGTYSRGMRQRLGLADVLIKNPEVIILDEPTLGIDPEGVRELLVLISDLSR 208 GL + KVG YSRGMRQRLGLAD LIK P+++ILDEPTLG+DPEG++E L LI +LSR Sbjct: 125 GLGEAKDKKVGAYSRGMRQRLGLADALIKKPQIVILDEPTLGLDPEGMKEFLELIKNLSR 184 Query: 209 NEGITXXXXXXXXXXXXXICDRVGLFVKGRLIACGDIATLSRELNQELRFEVELVVQPWS 268 G+T ICDRVG+FVKG+LIA G ++ L++EL + E+ V P Sbjct: 185 EGGMTVLLSSHHLHQVQEICDRVGIFVKGKLIAKGTVSELAKELFSTELYTFEVAVNPME 244 Query: 269 AELAGRLQAIEGVQRMETEDWKGENAPPGSVLATLTCDRNLTSAIAAQVIQSGAELYFIT 328 +L +L ++EGV+++E E G + ++++++ +A V++ G L + Sbjct: 245 DDLISKLMSVEGVKKVEKE---------GKAF-IVHAEKDVSAEVAKTVVKEGYNLVRLM 294 Query: 329 RKEFGLDEIYHRYFE 343 K +GLD+IYHRYFE Sbjct: 295 PKSYGLDDIYHRYFE 309 >B3KFV0.1 B3KFV0_9BACI ABC transporter related Length = 340 Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 168/328 (51%), Positives = 215/328 (65%), Gaps = 11/328 (3%) Query: 29 VIELNGLTKQYGTFTAVDGLSLAIRKGEVFGLLGPNGAGKTTTILMMLGLTERTSGSALI 88 VI++ LTK Y AVD LSL IR+GE+FGLLGPNGAGK+TTILM+LGL+E SGS + Sbjct: 4 VIDIQELTKSYHDTRAVDRLSLQIRRGEIFGLLGPNGAGKSTTILMLLGLSEPDSGSISV 63 Query: 89 CGYDPARYALQVKRRVGYMPDDIGFYEDRTGLDNLIYTARLNGIEAEEAERSAKRLLEKV 148 G +P R + VKRRVGY+PDD+GFYEDRTG++NL+ TARLN I +A A LLE+V Sbjct: 64 LGINPTREPIPVKRRVGYLPDDVGFYEDRTGMENLMLTARLNRIPDNQARERALELLEQV 123 Query: 149 GLSGSARAKVGTYSRGMRQRLGLADVLIKNPEVIILDEPTLGIDPEGVRELLVLISDLSR 208 GL+ +A K G YSRGMRQRLGLADVL+K+PE+IILDEPTLGIDP G+ ELL LI LSR Sbjct: 124 GLTHAAHKKTGAYSRGMRQRLGLADVLMKSPEIIILDEPTLGIDPTGMEELLRLIRKLSR 183 Query: 209 NEGITXXXXXXXXXXXXXICDRVGLFVKGRLIACGDIATLSRELNQELRFEVELVVQPWS 268 +G+T ICDRVGLFV+GRL+A GD+ +LSR L + + + Sbjct: 184 EQGLTVLLSSHQLHQVQQICDRVGLFVRGRLLAEGDVGSLSRTLFADDPIMITAELDELV 243 Query: 269 AELAGRLQAIEGVQRMETEDWKGENAPPGS---------VLATLTCDRNLTSAIAAQVIQ 319 EL + +I GV ++E E+ P S + + DR+ + IA V+ Sbjct: 244 PELRDAIGSIPGVHQIEVP--PAESGPAESNDTLTRDLPIKVLIRADRDCSPEIARTVVN 301 Query: 320 SGAELYFITRKEFGLDEIYHRYFERKEE 347 +G L+ + R++ GLDEIYHRYF EE Sbjct: 302 AGVRLFSLNRQQHGLDEIYHRYFAGGEE 329 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,899,579,733 Number of extensions: 75837046 Number of successful extensions: 500820 Number of sequences better than 1.0e-05: 82882 Number of HSP's gapped: 425359 Number of HSP's successfully gapped: 88528 Length of query: 348 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 212 Effective length of database: 1,779,438,163 Effective search space: 377240890556 Effective search space used: 377240890556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)