BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0023.p (362 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q8A991.1 Q8A991_BACTN ABC-type transport, permease protein 328 5e-88 C3QTN6.1 C3QTN6_9BACE ABC-type transporter 328 7e-88 A7LSG1.1 A7LSG1_BACOV Putative uncharacterized protein 328 7e-88 C3QD91.1 C3QD91_9BACE ABC-type transporter 326 2e-87 A5ZCD7.1 A5ZCD7_9BACE Putative uncharacterized protein 326 3e-87 >Q8A991.1 Q8A991_BACTN ABC-type transport, permease protein Length = 318 Score = 328 bits (841), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 162/313 (51%), Positives = 213/313 (68%), Gaps = 2/313 (0%) Query: 49 FWVMVQKEMGDHVRSWRFTILIGIIVLACXXXXXXXXXXXXXXXXADQGPATFLFLKMFT 108 FWV+V KE+ DHV+SWRF ILIGII L C D ++FLFLK+FT Sbjct: 8 FWVIVHKEISDHVKSWRFLILIGIIALTCMGSLYTALTNIGAAIKPDDPDSSFLFLKLFT 67 Query: 109 LSSSTLSIPTFTTFLSWLGPLIGISLGFDAVNSERNKGTLGRLLSQPVYRDDFLKAKFTA 168 S TL P+F F+++LGPL+GI+LGFDAVNSE+NKGTL R+LSQP++RD + AKF A Sbjct: 68 ASDGTL--PSFVLFINFLGPLLGIALGFDAVNSEQNKGTLSRMLSQPIHRDCIINAKFVA 125 Query: 169 SLLLIAXXXXXXXXXXXXXXXXXXXYPPTPEEFWRILFFLIIATVYIGFWLNLSILFSIR 228 +L++I PPT EEFWRI+FFLI + Y+ FWLNL+ILFS+R Sbjct: 126 ALIVIGIMLFVLGFLVMGFGLIAIGIPPTAEEFWRIVFFLITSIFYVAFWLNLAILFSLR 185 Query: 229 FRQAATSALSGIAAWLFLTLFYSMIISLIDSATAVSQTATVGEQLRHVHFILALNRLSPT 288 FRQAATSAL+ +A WLF ++FY+MI++L+ + SQ A+ + + + FIL L RL+P+ Sbjct: 186 FRQAATSALASVAVWLFFSVFYTMIVNLVAKGLSPSQMASPYQIISYQKFILGLMRLAPS 245 Query: 289 ELFSETITTLLSPGIRSLGPLTMDQLVGAIXXXXXXXXXXXXVWPQLTGLLAATALCFGL 348 ELF+E TTLL P +RS+GPLTM+Q+ GAI VWPQLTGL+AAT +CF + Sbjct: 246 ELFNEATTTLLMPSVRSIGPLTMEQVQGAIPSPLPLGQSLLVVWPQLTGLIAATVICFAI 305 Query: 349 SYYLFMRQEVRSR 361 SY +FMR+E+RSR Sbjct: 306 SYIMFMRREIRSR 318 >C3QTN6.1 C3QTN6_9BACE ABC-type transporter Length = 318 Score = 328 bits (840), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 161/313 (51%), Positives = 213/313 (68%), Gaps = 2/313 (0%) Query: 49 FWVMVQKEMGDHVRSWRFTILIGIIVLACXXXXXXXXXXXXXXXXADQGPATFLFLKMFT 108 FWV+V KE+ DHV+SWRF ILIGII L C + +FLFLK+FT Sbjct: 8 FWVIVNKEISDHVKSWRFIILIGIIALTCMGSLYTALTNISEAIKPNDPDGSFLFLKLFT 67 Query: 109 LSSSTLSIPTFTTFLSWLGPLIGISLGFDAVNSERNKGTLGRLLSQPVYRDDFLKAKFTA 168 +S TL P+F F+++LGPL+GI+LGFDAVNSE+NKGTL R+LSQP++RD + AKF A Sbjct: 68 VSDGTL--PSFVLFINFLGPLLGIALGFDAVNSEQNKGTLSRMLSQPIHRDCIINAKFVA 125 Query: 169 SLLLIAXXXXXXXXXXXXXXXXXXXYPPTPEEFWRILFFLIIATVYIGFWLNLSILFSIR 228 +L++I PPT EEFWRI+FF+I + Y+ FWLNL+ILFS+R Sbjct: 126 ALIVIGIMLFVLGFLVMGCGLIAIGIPPTAEEFWRIVFFIITSIFYVAFWLNLAILFSLR 185 Query: 229 FRQAATSALSGIAAWLFLTLFYSMIISLIDSATAVSQTATVGEQLRHVHFILALNRLSPT 288 FRQAATSAL+ +A WLF ++FY+MI++L+ + SQ A+ + + + FIL L RL+P+ Sbjct: 186 FRQAATSALASVAVWLFFSVFYTMIVNLVAKGLSPSQMASPYQIISYQKFILGLMRLAPS 245 Query: 289 ELFSETITTLLSPGIRSLGPLTMDQLVGAIXXXXXXXXXXXXVWPQLTGLLAATALCFGL 348 ELF+E TTLL P +RSLGPLTM+Q+ GAI VWPQLTGL+AAT +CF + Sbjct: 246 ELFNEATTTLLMPSVRSLGPLTMEQVQGAIPSPLPLGQSLLVVWPQLTGLIAATVICFAI 305 Query: 349 SYYLFMRQEVRSR 361 SY +FMR+E+RSR Sbjct: 306 SYIMFMRREIRSR 318 >A7LSG1.1 A7LSG1_BACOV Putative uncharacterized protein Length = 318 Score = 328 bits (840), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 161/313 (51%), Positives = 213/313 (68%), Gaps = 2/313 (0%) Query: 49 FWVMVQKEMGDHVRSWRFTILIGIIVLACXXXXXXXXXXXXXXXXADQGPATFLFLKMFT 108 FWV+V KE+ DHV+SWRF ILIGII L C + +FLFLK+FT Sbjct: 8 FWVIVNKEISDHVKSWRFIILIGIIALTCMGSLYTALTNISEAIKPNDPDGSFLFLKLFT 67 Query: 109 LSSSTLSIPTFTTFLSWLGPLIGISLGFDAVNSERNKGTLGRLLSQPVYRDDFLKAKFTA 168 +S TL P+F F+++LGPL+GI+LGFDAVNSE+NKGTL R+LSQP++RD + AKF A Sbjct: 68 VSDGTL--PSFVLFINFLGPLLGIALGFDAVNSEQNKGTLSRMLSQPIHRDCIINAKFVA 125 Query: 169 SLLLIAXXXXXXXXXXXXXXXXXXXYPPTPEEFWRILFFLIIATVYIGFWLNLSILFSIR 228 +L++I PPT EEFWRI+FF+I + Y+ FWLNL+ILFS+R Sbjct: 126 ALIVIGIMLFVLGFLVMGCGLIAIGIPPTAEEFWRIVFFIITSIFYVAFWLNLAILFSLR 185 Query: 229 FRQAATSALSGIAAWLFLTLFYSMIISLIDSATAVSQTATVGEQLRHVHFILALNRLSPT 288 FRQAATSAL+ +A WLF ++FY+MI++L+ + SQ A+ + + + FIL L RL+P+ Sbjct: 186 FRQAATSALASVAVWLFFSVFYTMIVNLVAKGLSPSQMASPYQIISYQKFILGLMRLAPS 245 Query: 289 ELFSETITTLLSPGIRSLGPLTMDQLVGAIXXXXXXXXXXXXVWPQLTGLLAATALCFGL 348 ELF+E TTLL P +RSLGPLTM+Q+ GAI VWPQLTGL+AAT +CF + Sbjct: 246 ELFNEATTTLLMPSVRSLGPLTMEQVQGAIPSPLPLGQSLLVVWPQLTGLIAATVICFAI 305 Query: 349 SYYLFMRQEVRSR 361 SY +FMR+E+RSR Sbjct: 306 SYIMFMRREIRSR 318 >C3QD91.1 C3QD91_9BACE ABC-type transporter Length = 318 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 161/313 (51%), Positives = 213/313 (68%), Gaps = 2/313 (0%) Query: 49 FWVMVQKEMGDHVRSWRFTILIGIIVLACXXXXXXXXXXXXXXXXADQGPATFLFLKMFT 108 FWV+V KE+ DHV+SWRF ILIGII L C + +FLFLK+FT Sbjct: 8 FWVIVNKEISDHVKSWRFIILIGIIALTCMGSLYTALTNIGEAIKPNDPDGSFLFLKLFT 67 Query: 109 LSSSTLSIPTFTTFLSWLGPLIGISLGFDAVNSERNKGTLGRLLSQPVYRDDFLKAKFTA 168 +S TL P+F F+++LGPL+GI+LGFDAVNSE+NKGTL R+LSQP++RD + AKF A Sbjct: 68 VSDGTL--PSFVLFINFLGPLLGIALGFDAVNSEQNKGTLSRMLSQPIHRDCIINAKFVA 125 Query: 169 SLLLIAXXXXXXXXXXXXXXXXXXXYPPTPEEFWRILFFLIIATVYIGFWLNLSILFSIR 228 +L++I PPT EEFWRI+FF+I + Y+ FWLNL+ILFS+R Sbjct: 126 ALIVIGIMLFVLGFWVMGCGLIAIGIPPTAEEFWRIVFFIITSIFYVAFWLNLAILFSLR 185 Query: 229 FRQAATSALSGIAAWLFLTLFYSMIISLIDSATAVSQTATVGEQLRHVHFILALNRLSPT 288 FRQAATSAL+ +A WLF ++FY+MI++L+ + SQ A+ + + + FIL L RL+P+ Sbjct: 186 FRQAATSALASVAVWLFFSVFYTMIVNLVAKGLSPSQMASPYQIISYQKFILGLMRLAPS 245 Query: 289 ELFSETITTLLSPGIRSLGPLTMDQLVGAIXXXXXXXXXXXXVWPQLTGLLAATALCFGL 348 ELF+E TTLL P +RSLGPLTM+Q+ GAI VWPQLTGL+AAT +CF + Sbjct: 246 ELFNEATTTLLMPSVRSLGPLTMEQVQGAIPSPLPLGQSLLVVWPQLTGLIAATVICFAI 305 Query: 349 SYYLFMRQEVRSR 361 SY +FMR+E+RSR Sbjct: 306 SYIMFMRREIRSR 318 >A5ZCD7.1 A5ZCD7_9BACE Putative uncharacterized protein Length = 318 Score = 326 bits (835), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 161/313 (51%), Positives = 212/313 (67%), Gaps = 2/313 (0%) Query: 49 FWVMVQKEMGDHVRSWRFTILIGIIVLACXXXXXXXXXXXXXXXXADQGPATFLFLKMFT 108 FWV+V KE+ DHV+SWRF ILIGII L C + +FLFLK+FT Sbjct: 8 FWVIVNKEISDHVKSWRFIILIGIIALTCMGSLYTALTNIGATIKPNDPDGSFLFLKLFT 67 Query: 109 LSSSTLSIPTFTTFLSWLGPLIGISLGFDAVNSERNKGTLGRLLSQPVYRDDFLKAKFTA 168 S TL P+FT F+++LGPL+GI+LGFDAVNSE+NKGTL R+LSQP++RD + AKF A Sbjct: 68 ASDGTL--PSFTLFINFLGPLLGIALGFDAVNSEQNKGTLSRMLSQPIHRDCIINAKFMA 125 Query: 169 SLLLIAXXXXXXXXXXXXXXXXXXXYPPTPEEFWRILFFLIIATVYIGFWLNLSILFSIR 228 +L++I PPT EEFWRI+FF+I + Y+ FWLNL+ILFS+R Sbjct: 126 ALIVIGVMLFVLGFLVMGFGLIAIGIPPTAEEFWRIVFFIITSIFYVAFWLNLAILFSLR 185 Query: 229 FRQAATSALSGIAAWLFLTLFYSMIISLIDSATAVSQTATVGEQLRHVHFILALNRLSPT 288 FRQAATSAL+ +A WLF ++FY+MI++L+ + SQ A+ + + + FIL L RL+P+ Sbjct: 186 FRQAATSALASVAVWLFFSVFYTMIVNLVAKGLSPSQMASPYQIISYQKFILGLMRLAPS 245 Query: 289 ELFSETITTLLSPGIRSLGPLTMDQLVGAIXXXXXXXXXXXXVWPQLTGLLAATALCFGL 348 ELF+E TTLL P +RSLGPLTM+Q+ G I VWPQLTGL+AAT +CF + Sbjct: 246 ELFNEATTTLLMPSVRSLGPLTMEQVQGVIPSPLPLGQSLLVVWPQLTGLIAATVICFAI 305 Query: 349 SYYLFMRQEVRSR 361 SY +FMR+E+RSR Sbjct: 306 SYIMFMRREIRSR 318 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.139 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,732,636,419 Number of extensions: 59770396 Number of successful extensions: 254874 Number of sequences better than 1.0e-05: 55 Number of HSP's gapped: 254765 Number of HSP's successfully gapped: 55 Length of query: 362 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 225 Effective length of database: 1,770,017,148 Effective search space: 398253858300 Effective search space used: 398253858300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)