BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0545.0019.p
         (169 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DBJ1.1 B1DBJ1_9BACL Stage V sporulation protein AC                  184   2e-45
A4J4J2.1 A4J4J2_DESRM SpoVA protein                                   178   1e-43
C0ZH22.1 C0ZH22_BREBN Stage V sporulation protein AC                  173   5e-42
C1T9E9.1 C1T9E9_9FIRM Stage V sporulation protein AC                  172   9e-42
B1DBI8.1 B1DBI8_9BACL Stage V sporulation protein AC                  170   5e-41

>B1DBJ1.1 B1DBJ1_9BACL Stage V sporulation protein AC
          Length = 164

 Score =  184 bits (468), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/157 (57%), Positives = 113/157 (71%)

Query: 12  GVKLKLDTLTPNDYEKLSKPYVPSRPVFKNCIRAFLSGGLICVIGQGIQEAFMAIFDMTS 71
           G K +  +++P +Y+  +K   PSR +F NCIRAF+ GG ICV+GQ IQ+ F+ +  M  
Sbjct: 8   GGKYRKMSMSPKEYQAFAKTREPSRSIFGNCIRAFIIGGAICVLGQAIQQLFIHLAHMKP 67

Query: 72  KQAASPTVAILILISVILTSFGVYDKLAQWCGAGTAVPVTGFANSMCSAALEHRAEGLVL 131
           + A++PTVA+LI+ISVILTS GVYDK+AQ+ GAG+AVPVTGFANSMCSAALEHR+EGLVL
Sbjct: 68  EDASNPTVAVLIIISVILTSIGVYDKIAQFAGAGSAVPVTGFANSMCSAALEHRSEGLVL 127

Query: 132 GVGANMFKLAGSXXXXXXXXXXXXXXXYAILGFGGGH 168
           GVG NMFKLAGS               + I G GG H
Sbjct: 128 GVGGNMFKLAGSVIVYGTVAAFFVGIAHLIFGTGGAH 164


>A4J4J2.1 A4J4J2_DESRM SpoVA protein
          Length = 159

 Score =  178 bits (452), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/133 (67%), Positives = 100/133 (75%)

Query: 11  SGVKLKLDTLTPNDYEKLSKPYVPSRPVFKNCIRAFLSGGLICVIGQGIQEAFMAIFDMT 70
           S  K K  T T  +Y   +K   P RPV  N  RAFL+GG+ICVIGQGIQ+ F+  FD T
Sbjct: 2   SNKKKKKLTPTQQEYYAFAKAREPKRPVVTNVCRAFLAGGIICVIGQGIQDFFIWHFDFT 61

Query: 71  SKQAASPTVAILILISVILTSFGVYDKLAQWCGAGTAVPVTGFANSMCSAALEHRAEGLV 130
            K A SPTVAILIL+SVILTS GVYD +AQW GAGTAVPVTGFANS+ SAA+EHR EG V
Sbjct: 62  EKTAGSPTVAILILVSVILTSLGVYDHIAQWAGAGTAVPVTGFANSIASAAIEHRTEGYV 121

Query: 131 LGVGANMFKLAGS 143
           LGVG NMFKLAGS
Sbjct: 122 LGVGGNMFKLAGS 134


>C0ZH22.1 C0ZH22_BREBN Stage V sporulation protein AC
          Length = 157

 Score =  173 bits (438), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 102/130 (78%), Gaps = 2/130 (1%)

Query: 16  KLDTLTP--NDYEKLSKPYVPSRPVFKNCIRAFLSGGLICVIGQGIQEAFMAIFDMTSKQ 73
           K   LTP   +Y++L+K + P +P+ +N  RAFL GG IC+IGQGIQE F+  FD T K 
Sbjct: 5   KKKKLTPVQQEYQQLAKTHEPRQPLLRNFTRAFLVGGGICMIGQGIQEMFIHYFDFTEKT 64

Query: 74  AASPTVAILILISVILTSFGVYDKLAQWCGAGTAVPVTGFANSMCSAALEHRAEGLVLGV 133
           A +PTVA+LIL+S +LT  G+YD++AQW GAGT+VPVTGFANS+ SAA+EHR+EG VLGV
Sbjct: 65  AGNPTVAVLILLSALLTGLGLYDRIAQWAGAGTSVPVTGFANSIASAAIEHRSEGFVLGV 124

Query: 134 GANMFKLAGS 143
           G NMFKLAGS
Sbjct: 125 GGNMFKLAGS 134


>C1T9E9.1 C1T9E9_9FIRM Stage V sporulation protein AC
          Length = 159

 Score =  172 bits (436), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 99/133 (74%)

Query: 11  SGVKLKLDTLTPNDYEKLSKPYVPSRPVFKNCIRAFLSGGLICVIGQGIQEAFMAIFDMT 70
           S  KLK  T+   +Y+K ++   P RPV  NC RAFL GG ICV GQ IQ  F+  F  T
Sbjct: 2   SNQKLKKLTMVQQEYKKFAQIREPQRPVLMNCARAFLVGGTICVFGQLIQGFFVNHFGFT 61

Query: 71  SKQAASPTVAILILISVILTSFGVYDKLAQWCGAGTAVPVTGFANSMCSAALEHRAEGLV 130
            K A +PTVA+LILISVILT+ GVYD +AQW GAGTAVPVTGFANS+ +AA+EHR+EG V
Sbjct: 62  QKTAGNPTVAVLILISVILTALGVYDHIAQWAGAGTAVPVTGFANSIAAAAIEHRSEGFV 121

Query: 131 LGVGANMFKLAGS 143
           LGVG NMFKLAGS
Sbjct: 122 LGVGGNMFKLAGS 134


>B1DBI8.1 B1DBI8_9BACL Stage V sporulation protein AC
          Length = 162

 Score =  170 bits (430), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 100/124 (80%)

Query: 19  TLTPNDYEKLSKPYVPSRPVFKNCIRAFLSGGLICVIGQGIQEAFMAIFDMTSKQAASPT 78
           T    +Y++L+K + P RP+F NC++AFL GGLIC+IGQ IQE F+       K+A++PT
Sbjct: 10  TPVQQEYQELAKKHEPKRPIFINCLKAFLVGGLICIIGQSIQEMFVHWAGFDEKKASNPT 69

Query: 79  VAILILISVILTSFGVYDKLAQWCGAGTAVPVTGFANSMCSAALEHRAEGLVLGVGANMF 138
           VAI+I +SV+LTS G+YDK+AQW GAG+AVPVTGFAN+M SAA+EHR+EGLVLGVG  MF
Sbjct: 70  VAIMIFLSVVLTSLGIYDKIAQWAGAGSAVPVTGFANTMSSAAIEHRSEGLVLGVGGKMF 129

Query: 139 KLAG 142
           K++G
Sbjct: 130 KISG 133


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 896,502,435
Number of extensions: 32877142
Number of successful extensions: 67960
Number of sequences better than 1.0e-05: 533
Number of HSP's gapped: 67730
Number of HSP's successfully gapped: 533
Length of query: 169
Length of database: 3,060,696,203
Length adjustment: 125
Effective length of query: 44
Effective length of database: 1,883,069,328
Effective search space: 82855050432
Effective search space used: 82855050432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)