BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0545.0017.p
         (116 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFX4.1 B3KFX4_9BACI Stage V sporulation protein AE                  199   6e-50
B1DBJ3.1 B1DBJ3_9BACL Stage V sporulation protein AE                  185   1e-45
B1DBJ0.1 B1DBJ0_9BACL Stage V sporulation protein AE                  181   1e-44
Q9KCK1.1 Q9KCK1_BACHD Sporulation protein                             175   1e-42
C0ZH20.1 C0ZH20_BREBN Putative stage V sporulation protein AE         175   1e-42

>B3KFX4.1 B3KFX4_9BACI Stage V sporulation protein AE
          Length = 116

 Score =  199 bits (506), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/116 (85%), Positives = 109/116 (93%)

Query: 1   MIYLWAFLIGGAICVIGQLLMDVLGLTPAHTMSTLVVAGAAADAFGIYDPLVKFAGAGAS 60
           M +LWAF+IGG ICVIGQ++MDV+ LTPAHTMSTLVVAGA AD FG+Y+PLVKFAGAGAS
Sbjct: 1   MQFLWAFIIGGLICVIGQIMMDVIKLTPAHTMSTLVVAGAIADGFGLYEPLVKFAGAGAS 60

Query: 61  VPITSFGNSLVHGALTELERDGWIGVVTGIFDVTSAGISAAIVFSFLAALVVRPKG 116
           VPITSFGNSLVHGALTEL RDGWIGVVTGIF+VTSAGIS+AI+FSFLAAL VRPKG
Sbjct: 61  VPITSFGNSLVHGALTELGRDGWIGVVTGIFEVTSAGISSAIIFSFLAALFVRPKG 116


>B1DBJ3.1 B1DBJ3_9BACL Stage V sporulation protein AE
          Length = 116

 Score =  185 bits (469), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/116 (78%), Positives = 104/116 (89%)

Query: 1   MIYLWAFLIGGAICVIGQLLMDVLGLTPAHTMSTLVVAGAAADAFGIYDPLVKFAGAGAS 60
           M +LWAF++GGAICV+GQLL DV+ LTPAHTM+TLVVAGA  D  G Y+PLV FAGAGA+
Sbjct: 1   MQFLWAFVVGGAICVVGQLLFDVVKLTPAHTMATLVVAGAIIDGLGWYEPLVSFAGAGAT 60

Query: 61  VPITSFGNSLVHGALTELERDGWIGVVTGIFDVTSAGISAAIVFSFLAALVVRPKG 116
           VPITSFGN+LVHGALTEL+  GWIGV++GIF VTSAGISAAI+FSFLAALVVRPKG
Sbjct: 61  VPITSFGNALVHGALTELQNSGWIGVISGIFKVTSAGISAAIIFSFLAALVVRPKG 116


>B1DBJ0.1 B1DBJ0_9BACL Stage V sporulation protein AE
          Length = 116

 Score =  181 bits (460), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/116 (74%), Positives = 102/116 (87%)

Query: 1   MIYLWAFLIGGAICVIGQLLMDVLGLTPAHTMSTLVVAGAAADAFGIYDPLVKFAGAGAS 60
           MI+LWAFL+GGAICVIGQ+  DV  LTPAHTM+ LVV GA  D  GIYDPL+KFAGAGAS
Sbjct: 1   MIFLWAFLVGGAICVIGQICFDVFKLTPAHTMTLLVVLGAIGDGVGIYDPLIKFAGAGAS 60

Query: 61  VPITSFGNSLVHGALTELERDGWIGVVTGIFDVTSAGISAAIVFSFLAALVVRPKG 116
           +PITSFGN+LVHGAL E+++ GWIG++TGIF VTSAG+SAAI+FSF+AAL V+PKG
Sbjct: 61  IPITSFGNALVHGALEEMKKTGWIGIITGIFKVTSAGVSAAIIFSFIAALFVKPKG 116


>Q9KCK1.1 Q9KCK1_BACHD Sporulation protein
          Length = 116

 Score =  175 bits (444), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 104/116 (89%)

Query: 1   MIYLWAFLIGGAICVIGQLLMDVLGLTPAHTMSTLVVAGAAADAFGIYDPLVKFAGAGAS 60
           MI+LWAF++GG ICVIGQLLMDV  LTPAHTMS+LVVAGA  D  G+Y+PL+ FAGAGA+
Sbjct: 1   MIFLWAFIVGGLICVIGQLLMDVGKLTPAHTMSSLVVAGAVLDGVGLYEPLIDFAGAGAT 60

Query: 61  VPITSFGNSLVHGALTELERDGWIGVVTGIFDVTSAGISAAIVFSFLAALVVRPKG 116
           VPITSFGN+LVHGA++E +R+G IGV+TGIF+VTSAGIS+AI+F F+AAL+ +PKG
Sbjct: 61  VPITSFGNALVHGAISEAQRNGIIGVITGIFEVTSAGISSAIIFGFIAALLFKPKG 116


>C0ZH20.1 C0ZH20_BREBN Putative stage V sporulation protein AE
          Length = 116

 Score =  175 bits (443), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 101/116 (87%)

Query: 1   MIYLWAFLIGGAICVIGQLLMDVLGLTPAHTMSTLVVAGAAADAFGIYDPLVKFAGAGAS 60
           M++LWAFL+GG IC+IGQ LMDV+ LTPAHTMS+LVV GA  D FG+Y+PLV FAGAGA+
Sbjct: 1   MMFLWAFLVGGTICLIGQFLMDVVKLTPAHTMSSLVVTGAVLDGFGLYEPLVNFAGAGAT 60

Query: 61  VPITSFGNSLVHGALTELERDGWIGVVTGIFDVTSAGISAAIVFSFLAALVVRPKG 116
           VPITSFGN+LVHGA+ E E+ G IG++TGIF+VTSAGISAAIVF F+ A++ RPKG
Sbjct: 61  VPITSFGNALVHGAMAEAEKHGVIGIITGIFEVTSAGISAAIVFGFIMAVMFRPKG 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.142    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 685,897,684
Number of extensions: 26264723
Number of successful extensions: 111572
Number of sequences better than 1.0e-05: 593
Number of HSP's gapped: 111280
Number of HSP's successfully gapped: 593
Length of query: 116
Length of database: 3,060,696,203
Length adjustment: 83
Effective length of query: 33
Effective length of database: 2,278,751,958
Effective search space: 75198814614
Effective search space used: 75198814614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)