BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0015.p (483 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8D0J5.1 B8D0J5_HALOH Methyl-accepting chemotaxis sensory transd... 204 1e-50 A6CP73.1 A6CP73_9BACI Methyl-accepting chemotaxis protein 203 3e-50 B1DFB5.1 B1DFB5_9BACL Methyl-accepting chemotaxis sensory transd... 176 5e-42 Q2B9G7.1 Q2B9G7_9BACI Methyl-accepting chemotaxis protein 171 1e-40 B1DIY3.1 B1DIY3_9BACL Methyl-accepting chemotaxis sensory transd... 166 6e-39 >B8D0J5.1 B8D0J5_HALOH Methyl-accepting chemotaxis sensory transducer Length = 484 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 153/485 (31%), Positives = 272/485 (56%), Gaps = 23/485 (4%) Query: 2 RNKIIICAFWVVALLGVV-VAFQSSDLWITNAFVVP---LSAVLTVLHLRKKGTLIIPWV 57 +N +++ W++ ++GVV + ++S+ + + F + ++ +LT L + T I + Sbjct: 10 QNLLLLKIMWLITVIGVVFLLYRSAPVIMITGFTITCLIVNILLTFLMWKNILTQYIQYF 69 Query: 58 FTVILGVLS-VYLNQGEVNIPVALLFCSMLL--FYPNYHYFAIAAGANAVNIFIQTVTGH 114 V L VL+ + ++ +LF +++L Y NY I +N + + Sbjct: 70 IIVGLSVLAWLLISTSNSFYSYLILFANLVLIALYTNYWPTLIMGISNLI------IVNS 123 Query: 115 SAGGANSDFLAYLGGFGMFVLISAVMLGVSIVNRKLFLRSELQRQAVEASGAQVEYLMER 174 GG + L + + VLI+ ++L + + K+ R + + Q V + + E L+E Sbjct: 124 LLGGIGRNNLLIIDLY--LVLITVLVLTQTHLRIKIQRRIDEKHQQVIKTEKEKESLLEE 181 Query: 175 VKKAVDGLYAFTGNFKEEVEMVDAITNEVVIGFQEVSKGIEYQASSIADITESISVSDQH 234 + V L F + KE +++ D I++EV F +++KGIE QA S+ +I ES S+ + Sbjct: 182 IMTTVKELSNFNSSLKENIKVTDRISSEVTKAFTDIAKGIEDQAHSVNEINESARSSNHN 241 Query: 235 IRDVAGYSQEMKQLSSDTADVSEQGSSNISLLAGQFAELREVMNNTSGQMQEFSERSLDM 294 +R +A S EM LS+ T + + +G+ + LL + ++ +++N + + +E++ + Sbjct: 242 VRALASASNEMLNLSNKTVNATSKGNEQVDLLDTKMQDVDQIINESVDLINRLNEQAQQI 301 Query: 295 HTMLDGIMQISRQTNLLALNASIEAARAGEHGRGFAVVAGEVRKLAESSGQTADSISEVL 354 +++ I I++QTNLLALNA+IEAARAGE G+GFAVVA E+R+LAE S ++ D I+ +L Sbjct: 302 GDIVETINNIAKQTNLLALNAAIEAARAGEAGQGFAVVADEIRELAEDSHRSTDKIASIL 361 Query: 355 ASLRQQTEGLIAQFEQSLQILHMGSESAQNT----EKVFQSIQTNANKVLAQAGDVEQSS 410 ++ +T Q + + I H S++N+ ++VF+ I N V+ QA +E+S Sbjct: 362 QDIKAKT----GQVTEQINIGHDAVLSSKNSTEEVKRVFKEIDDNTKNVVEQAQYLEESV 417 Query: 411 AGMKHFSEKVVGEITEFSSVTEQSSAATEEILAGVEEQRNITHHMVESFKQLESLIVGLN 470 G++ S+ +V EI+ SS+ E++SA+ EE+LAG EEQ N ++VESFKQL+ LI L Sbjct: 418 RGLEKESQAIVEEISSISSIIEETSASVEEVLAGSEEQTNKVKNIVESFKQLDKLINKLQ 477 Query: 471 ELVSG 475 L G Sbjct: 478 SLTKG 482 >A6CP73.1 A6CP73_9BACI Methyl-accepting chemotaxis protein Length = 495 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 141/446 (31%), Positives = 246/446 (55%), Gaps = 24/446 (5%) Query: 34 VVPLSAVLTVLHL----RKKGTLIIPWVFTVILGVLSVYLNQGEVNIPVA----LLFCSM 85 ++PLSA+ ++++ KG I+ F IL + ++ IP ++F ++ Sbjct: 50 MIPLSAITYIIYVLVRNHAKGKYILS-CFAFILSTIVIWF------IPSVNSWLIIFMTL 102 Query: 86 L--LFYPNYHYFAIAAGANAVNIFIQ-TVTGHSAGGANSDFLAYLGGFGMFVLISAVMLG 142 L L Y + ++ ++++F +V + + + F +++ V L Sbjct: 103 LFSLIYLHTRIMVLSIIYGSLSLFFHFSVNPYLENSL--QVIDLIVVFALYLFCGVVCLS 160 Query: 143 VSIVNRKLFLRSELQRQAVEASGAQVEYLMERVKKAVDGLYAFTGNFKEEVEMVDAITNE 202 V IV ++ ++ + S + ++E +K + L F N +E + + +T+E Sbjct: 161 VCIVGNRIIGDAKENEKTAMKSQEKNMAIIEDIKITLHSLTQFYSNLQERITKTNQVTDE 220 Query: 203 VVIGFQEVSKGIEYQASSIADITESISVSDQHIRDVAGYSQEMKQLSSDTADVSEQGSSN 262 +V F EV KG E QASSI D+ ES S+ ++ V ++ MKQLS TA+++ G Sbjct: 221 IVFSFSEVVKGAESQASSITDMNESTHSSNMKVQTVVEKAKGMKQLSISTAEITNIGDRK 280 Query: 263 ISLLAGQFAELREVMNNTSGQMQEFSERSLDMHTMLDGIMQISRQTNLLALNASIEAARA 322 I L + ++ +++NT+ + E +E++ + T++ I IS QTNLLALNA+IEAARA Sbjct: 281 IKELVSENTQVSSMIHNTAQLINELNEKNKSISTIVKAISDISNQTNLLALNAAIEAARA 340 Query: 323 GEHGRGFAVVAGEVRKLAESSGQTADSISEVLASLRQQTEGLIAQFEQSL--QILHMGSE 380 GEHG+GF VVA E+RKLAE S ++ + IS +L S+++Q+ LIAQ E ++ + G+ Sbjct: 341 GEHGKGFGVVAAEIRKLAEVSQKSTEEISHILGSIQEQS-SLIAQ-EVAIGQEATRKGTV 398 Query: 381 SAQNTEKVFQSIQTNANKVLAQAGDVEQSSAGMKHFSEKVVGEITEFSSVTEQSSAATEE 440 + T + I N +K++A + +V++ + +E +V +I SS+TEQS+A ++E Sbjct: 399 LGEETGSTLKDILMNMDKLVAHSSEVQEMVDIVGGNTEAIVSDIESISSITEQSTAVSQE 458 Query: 441 ILAGVEEQRNITHHMVESFKQLESLI 466 I A +EEQR+ +VESF +LE+LI Sbjct: 459 IFASIEEQRSQMKGIVESFNELENLI 484 >B1DFB5.1 B1DFB5_9BACL Methyl-accepting chemotaxis sensory transducer Length = 490 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 147/497 (29%), Positives = 253/497 (50%), Gaps = 47/497 (9%) Query: 2 RNKIIICAFWVVALLGVVVAFQSS---DLWITNAFVVPLSAVLTVLHLRKKGTLIIPWVF 58 RNK+++ WV+ LLGV V F + D I A V L+ T + + K+ W+ Sbjct: 10 RNKLLVNIIWVMLLLGVAVDFLTGAGMDSIIVLAIVGTLTCGATTILVYKR------WLT 63 Query: 59 TVILGVLS-VYLNQGEVNIPVALLFCSMLLFYPNYHYFAIAAGANAVNIFIQTVTGHSAG 117 I+ +S + + + + + L Y VN+ I T+ G+S Sbjct: 64 NYIMYFISTIVTVLTLLLLLTGPIITTYFLVY--------------VNLAIMTLYGNSKA 109 Query: 118 GANSDFL-------AYLGG-----FG--------MFVLISAVMLGVSIVNRKLFLRSELQ 157 S + Y+ FG M+ + AV L VS + + ++ Sbjct: 110 IGYSGLMGVLLTVYCYISPDKIEIFGNNAPTTMFMYFFMVAVPLYVSTKFSERLQHNIIE 169 Query: 158 R--QAVEASGAQVEYLMERVKKAVDGLYAFTGNFKEEVEMVDAITNEVVIGFQEVSKGIE 215 + QA+ + +E L+ +V + L +F+ N K + +I+ EV F E++ +E Sbjct: 170 QGEQAMLENKRSLE-LVGQVSSSAGQLNSFSTNLKANMTTAGSISKEVTSAFSEITSSME 228 Query: 216 YQASSIADITESISVSDQHIRDVAGYSQEMKQLSSDTADVSEQGSSNISLLAGQFAELRE 275 Q SS+ DI+E+I + + +A S EMK LS+ +A +++ GS S L + + E Sbjct: 229 AQTSSMNDISEAIRHIEASVSSLADRSTEMKGLSASSALLTKAGSEGTSDLEHEMKRVNE 288 Query: 276 VMNNTSGQMQEFSERSLDMHTMLDGIMQISRQTNLLALNASIEAARAGEHGRGFAVVAGE 335 ++++ M E E++ + ++ I IS QTNLLALNA+IEAARAGEHG+GFAVV+ E Sbjct: 289 TIDSSVQLMNELGEQNTSISEIVATIKHISTQTNLLALNAAIEAARAGEHGKGFAVVSHE 348 Query: 336 VRKLAESSGQTADSISEVLASLRQQTEGLIAQFEQSLQILHMGSESAQNTEKVFQSIQTN 395 +RKLAE+S Q+ + I ++L S+R +T Q + Q + + +A+ V +++ ++ Sbjct: 349 IRKLAETSQQSTEQIEQILESIRTKTILAAEQVLEGQQSVVGSTAAARKVADVMRALASD 408 Query: 396 ANKVLAQAGDVEQSSAGMKHFSEKVVGEITEFSSVTEQSSAATEEILAGVEEQRNITHHM 455 ANK+ + +G+V+ S+ ++ ++ G+I + TEQ+ AA +E+ A + Q + + Sbjct: 409 ANKLESHSGEVDYSAEQLQEQYTRITGQIVSIAGSTEQNMAAIQEMSASMTTQDSRIVEI 468 Query: 456 VESFKQLESLIVGLNEL 472 VESF QL+ L LNE+ Sbjct: 469 VESFLQLDKLTSNLNEM 485 >Q2B9G7.1 Q2B9G7_9BACI Methyl-accepting chemotaxis protein Length = 488 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 134/477 (28%), Positives = 237/477 (49%), Gaps = 27/477 (5%) Query: 2 RNKIIICAFWVVALLGVVVAFQSSDLWITN-AFVVPLSAVLTVLHLRKKGTLIIPWVFTV 60 RN +++ W +LGV VA + +T A P S + + RKK +I + ++ Sbjct: 17 RNLLLVYLLWACVILGVAVASDTPKTVVTILAAGGPFSLFCSFMIWRKKAIPLIMYFISI 76 Query: 61 ILGVLSVYLNQGE---VNIPVALLFCSMLLFYPNYHYFAIAAGANAVNIFIQTVTGHSAG 117 L V+S + Q N+ + L ++ Y NY + N I V + Sbjct: 77 GLAVVSFFFVQSTAEFTNLLIFFLALGIISLYHNYRPLLL-------NGLIALVMMNYFL 129 Query: 118 GANSDF--LAYLGGFGMFVLISAVMLGVSIVNRKLFLRSELQRQAVEASGAQVEYLMERV 175 D+ + L F+L+ + + S++ + + E R+ E + E +++ V Sbjct: 130 AVKPDYGEVDKLAVNAFFILVLSALTAQSVLGNGMLKKVESGRKQSELQKQKTEVVLQEV 189 Query: 176 KKAVDGLYAFTGNFKEEVEMVDAITNEVVIGFQEVSKGIEYQASSIADITESISVSDQHI 235 ++ ++ L E E+ IT EVV+ FQE++ GIE QA+SI D+ +I + Sbjct: 190 QRTIEVLGKSNRGLNENAEVTGKITGEVVLAFQELAGGIESQAASITDVNSAIQDVYDGV 249 Query: 236 RDVAGYSQEMKQLSSDTADVSEQGSSNISLLAGQFAELREVMNNTSGQMQEFSERSLDMH 295 S M+ S+ +A+++ QG + L + + ++ T+ M + +E + + Sbjct: 250 MKANEASGIMEASSTASAEMTLQGKEKMDRLYEKMNRIGMMVETTNSVMAKVNEENKQIE 309 Query: 296 TMLDGIMQISRQTNLLALNASIEAARAGEHGRGFAVVAGEVRKLAESSGQTADSISEVLA 355 ++ I I+ QTNLL+LNA+IEAARAGEHG+GFAVVA EVRKLA+ + + I+ +L Sbjct: 310 GIVKLIAGIADQTNLLSLNAAIEAARAGEHGKGFAVVAEEVRKLAQQAHDASGRITGIL- 368 Query: 356 SLRQQTEGLIAQFEQSLQIL-------HMGSESAQNTEKVFQSIQTNANKVLAQAGDVEQ 408 EG+ F+++ +++ G +SA+ E +F SIQ ++ VL QA + Sbjct: 369 ------EGIQGTFKEAAELIGNGMAEVSDGRQSAEEAENLFSSIQEQSSAVLGQAEYLRS 422 Query: 409 SSAGMKHFSEKVVGEITEFSSVTEQSSAATEEILAGVEEQRNITHHMVESFKQLESL 465 + ++ + V E+T +++TEQS+A+ EE+LA E Q +VE+ ++L + Sbjct: 423 LNEQLQEAAASVREEMTAVAAITEQSAASVEEVLASAEVQEQRVMGIVENIRELNEM 479 >B1DIY3.1 B1DIY3_9BACL Methyl-accepting chemotaxis sensory transducer Length = 495 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 181/317 (57%), Gaps = 1/317 (0%) Query: 157 QRQAVEASGAQVEYLMERVKKAVDGLYAFTGNFKEEVEMVDAITNEVVIGFQEVSKGIEY 216 +R+A+EA E ++E++K + L F+ K VE I+ EV F E+S IE Sbjct: 175 RREALEAKEL-TEKVVEKLKSMILILGEFSNEQKGTVESTGKISREVTTTFAEMSASIEK 233 Query: 217 QASSIADITESISVSDQHIRDVAGYSQEMKQLSSDTADVSEQGSSNISLLAGQFAELREV 276 Q S + ++++S + + + S +++Q S+DTA ++ +G+ I L ++ + Sbjct: 234 QTSMVLNVSDSAHTIETAVSQLREGSSQLQQYSADTAGLTVEGNELIQTLTTDVNSVKAI 293 Query: 277 MNNTSGQMQEFSERSLDMHTMLDGIMQISRQTNLLALNASIEAARAGEHGRGFAVVAGEV 336 + T M++ E++ + +++ I +IS QTNLL+LNA+IEAARAGEHGRGFAVVAGEV Sbjct: 294 IAQTVSLMEQLIEQNEQVSSIVGSIREISEQTNLLSLNAAIEAARAGEHGRGFAVVAGEV 353 Query: 337 RKLAESSGQTADSISEVLASLRQQTEGLIAQFEQSLQILHMGSESAQNTEKVFQSIQTNA 396 RKLA+++ A I+ +L+++ + Q Q + E++Q E + + I +N Sbjct: 354 RKLADNAHIAAGEITNILSTIHASVTAVSEQVHLGQQAVDTSYEASQKVEGIIKRINSNT 413 Query: 397 NKVLAQAGDVEQSSAGMKHFSEKVVGEITEFSSVTEQSSAATEEILAGVEEQRNITHHMV 456 +V Q+ V +SS + + GE+T +++TEQ+ A+ EE+ A +E Q H+V Sbjct: 414 EQVKQQSDTVGESSKQLYDQYSSIAGEMTGMAAITEQNMASVEEVCASMETQDVKIGHLV 473 Query: 457 ESFKQLESLIVGLNELV 473 E + QL+ LI L +LV Sbjct: 474 EGYAQLDVLISELKQLV 490 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.130 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,416,072,728 Number of extensions: 91098732 Number of successful extensions: 412568 Number of sequences better than 1.0e-05: 12693 Number of HSP's gapped: 392459 Number of HSP's successfully gapped: 12794 Length of query: 483 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 343 Effective length of database: 1,741,754,103 Effective search space: 597421657329 Effective search space used: 597421657329 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)