BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0013.p (311 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFX5.1 B3KFX5_9BACI ATPase associated with various cellular ac... 478 e-133 B1DBJ5.1 B1DBJ5_9BACL ATPase associated with various cellular ac... 402 e-110 B7R8M6.1 B7R8M6_9THEO Putative ATPase, AAA family 345 4e-93 Q8R822.1 Q8R822_THETN MoxR-like ATPases 345 4e-93 C3J795.1 C3J795_9BACI ATPase associated with various cellular ac... 343 9e-93 >B3KFX5.1 B3KFX5_9BACI ATPase associated with various cellular activities AAA_3 Length = 318 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 235/309 (76%), Positives = 274/309 (88%) Query: 1 MQIMNAVRNNLESCILGKSFEIELLLTALLAGGHVLIEDVPGTGKTQLIRALSRSMSGEY 60 M+I+ +VR NLESC+LGK FEI+LLLTALLAGGHVLIEDVPGTGKTQLI+AL++SM G+Y Sbjct: 8 MKIITSVRTNLESCLLGKEFEIQLLLTALLAGGHVLIEDVPGTGKTQLIKALAKSMQGDY 67 Query: 61 RRIQCNPDILPSDITGVSVYHPRDEMFHFRPGPVMTNILLADEINRATTKTQSALLEVME 120 RRIQCNPDILPSDITGVSV+HPRDEMF+FRPGPVMTNILLADEINRATTKTQSALLEVME Sbjct: 68 RRIQCNPDILPSDITGVSVFHPRDEMFYFRPGPVMTNILLADEINRATTKTQSALLEVME 127 Query: 121 ERNVTVDGETYPLPHPFMLCATQNPIDFEGTYTLPEAQLDRFMLRISLGYPDADTEKNLL 180 ER+VTVDG T+ LPHPFMLCATQNPIDFEGTY LPEAQLDRFML++SLGYPDA TEK L+ Sbjct: 128 ERSVTVDGATHELPHPFMLCATQNPIDFEGTYMLPEAQLDRFMLKLSLGYPDAATEKQLM 187 Query: 181 MSHQEGQPVDRLTPVTGMDQIAAIQEEIRSVYISDPVLNYLLDVVRQTREHPLVLLGASP 240 ++GQ D+L PVT MD+I++IQ EIR V+I +PV +YLL++ R TREHP V+LGASP Sbjct: 188 YRSRDGQLSDKLQPVTHMDKISSIQREIREVFIGEPVADYLLNITRSTREHPSVMLGASP 247 Query: 241 RASLSFMMACKAYAFLQERDYVLPDDVKILTPYALGHRILLRPESRLDNVNVDTLLQKLL 300 RA+LSFM A KAYAFLQERDYVLPDDVK L PY L HRI+LRPE+RLDN + +++L+ +L Sbjct: 248 RATLSFMNAVKAYAFLQERDYVLPDDVKTLAPYVLSHRIMLRPEARLDNASPESVLEFIL 307 Query: 301 QSIHVPVTM 309 + + VPV M Sbjct: 308 RQVKVPVQM 316 >B1DBJ5.1 B1DBJ5_9BACL ATPase associated with various cellular activities AAA_3 Length = 318 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 183/311 (58%), Positives = 247/311 (79%) Query: 1 MQIMNAVRNNLESCILGKSFEIELLLTALLAGGHVLIEDVPGTGKTQLIRALSRSMSGEY 60 MQ+ + + N+L CILGK EIE L+ A+LAGGHVL+EDVPGTGKTQL++AL+R++ G++ Sbjct: 8 MQLCSLILNSLNECILGKQSEIERLMVAVLAGGHVLLEDVPGTGKTQLVKALARTIGGQF 67 Query: 61 RRIQCNPDILPSDITGVSVYHPRDEMFHFRPGPVMTNILLADEINRATTKTQSALLEVME 120 RRIQCNPD+LP+DITGVS+YHP+ E F FRPGPVMTN+LLADEINRATTKTQSALLE ME Sbjct: 68 RRIQCNPDLLPTDITGVSIYHPKQEQFIFRPGPVMTNVLLADEINRATTKTQSALLEAME 127 Query: 121 ERNVTVDGETYPLPHPFMLCATQNPIDFEGTYTLPEAQLDRFMLRISLGYPDADTEKNLL 180 E +VTVDG+TY LP PF+L ATQNPIDFEGTY+LPEAQLDRFM++++LGYP+ E+ ++ Sbjct: 128 EGHVTVDGDTYMLPAPFILLATQNPIDFEGTYSLPEAQLDRFMMKLTLGYPNEADEQRMI 187 Query: 181 MSHQEGQPVDRLTPVTGMDQIAAIQEEIRSVYISDPVLNYLLDVVRQTREHPLVLLGASP 240 ++ + G P DR+ +T ++ I IQ+++++V+I D V NYL+ +VR TR HP VLLGASP Sbjct: 188 LARESGHPSDRMEQITSIEDIERIQQQVQAVHIDDAVGNYLIQLVRATRSHPHVLLGASP 247 Query: 241 RASLSFMMACKAYAFLQERDYVLPDDVKILTPYALGHRILLRPESRLDNVNVDTLLQKLL 300 RA+++ A KA AFL +R +V PDDVK L PY L HR+LL ++R++ + + ++ +L Sbjct: 248 RAAIALSRAAKASAFLAQRTFVTPDDVKQLAPYVLSHRLLLHTDARMNGLRSEDIIADVL 307 Query: 301 QSIHVPVTMRQ 311 + VPV + + Sbjct: 308 EKTKVPVRLER 318 >B7R8M6.1 B7R8M6_9THEO Putative ATPase, AAA family Length = 317 Score = 345 bits (884), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 154/301 (51%), Positives = 220/301 (73%) Query: 10 NLESCILGKSFEIELLLTALLAGGHVLIEDVPGTGKTQLIRALSRSMSGEYRRIQCNPDI 69 N+E I+GK +EL++ ALLA GHVLIEDVPG GKT L++AL++S++ +RRIQ PD+ Sbjct: 15 NIEKVIIGKREAVELVIIALLAEGHVLIEDVPGVGKTSLVKALAKSINASFRRIQFTPDL 74 Query: 70 LPSDITGVSVYHPRDEMFHFRPGPVMTNILLADEINRATTKTQSALLEVMEERNVTVDGE 129 +PSD+ GV+VY+ + F F+PGP+M+NI+LADEINR + KTQS+LLE MEE+ +TVDG Sbjct: 75 VPSDVVGVTVYNQQKREFEFKPGPIMSNIVLADEINRTSPKTQSSLLEAMEEKQITVDGV 134 Query: 130 TYPLPHPFMLCATQNPIDFEGTYTLPEAQLDRFMLRISLGYPDADTEKNLLMSHQEGQPV 189 TYPLP PFM+ ATQNPI++EGT+ LPEAQLDRFM++I +GYP E +L + +E P+ Sbjct: 135 TYPLPKPFMVLATQNPIEYEGTFKLPEAQLDRFMIKIEIGYPSEAEELEILANFEEKNPL 194 Query: 190 DRLTPVTGMDQIAAIQEEIRSVYISDPVLNYLLDVVRQTREHPLVLLGASPRASLSFMMA 249 + L PV +++ +QEE++ VY+ D V NY++++V TR+ + LGASPRA+L+ M + Sbjct: 195 EELKPVVNAEEVIKMQEEVKKVYVEDIVRNYIVNLVSSTRKSKAIRLGASPRATLNLMRS 254 Query: 250 CKAYAFLQERDYVLPDDVKILTPYALGHRILLRPESRLDNVNVDTLLQKLLQSIHVPVTM 309 +A A+ Q RDYVLPDDVK L L HRI+LR E + + ++ ++ ++ + VPV Sbjct: 255 AQARAYCQGRDYVLPDDVKALAVPVLSHRIILRNEEKFEGLDERMFIKNIVDTTKVPVVR 314 Query: 310 R 310 R Sbjct: 315 R 315 >Q8R822.1 Q8R822_THETN MoxR-like ATPases Length = 315 Score = 345 bits (884), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 154/301 (51%), Positives = 220/301 (73%) Query: 10 NLESCILGKSFEIELLLTALLAGGHVLIEDVPGTGKTQLIRALSRSMSGEYRRIQCNPDI 69 N+E I+GK +EL++ ALLA GHVLIEDVPG GKT L++AL++S++ +RRIQ PD+ Sbjct: 13 NIEKVIIGKREAVELVIIALLAEGHVLIEDVPGVGKTSLVKALAKSINASFRRIQFTPDL 72 Query: 70 LPSDITGVSVYHPRDEMFHFRPGPVMTNILLADEINRATTKTQSALLEVMEERNVTVDGE 129 +PSD+ GV+VY+ + F F+PGP+M+NI+LADEINR + KTQS+LLE MEE+ +TVDG Sbjct: 73 VPSDVVGVTVYNQQKREFEFKPGPIMSNIVLADEINRTSPKTQSSLLEAMEEKQITVDGV 132 Query: 130 TYPLPHPFMLCATQNPIDFEGTYTLPEAQLDRFMLRISLGYPDADTEKNLLMSHQEGQPV 189 TYPLP PFM+ ATQNPI++EGT+ LPEAQLDRFM++I +GYP E +L + +E P+ Sbjct: 133 TYPLPKPFMVLATQNPIEYEGTFKLPEAQLDRFMIKIEIGYPSEAEELEILANFEEKNPL 192 Query: 190 DRLTPVTGMDQIAAIQEEIRSVYISDPVLNYLLDVVRQTREHPLVLLGASPRASLSFMMA 249 + L PV +++ +QEE++ VY+ D V NY++++V TR+ + LGASPRA+L+ M + Sbjct: 193 EELKPVVNAEEVIKMQEEVKKVYVEDIVRNYIVNLVSSTRKSKAIRLGASPRATLNLMRS 252 Query: 250 CKAYAFLQERDYVLPDDVKILTPYALGHRILLRPESRLDNVNVDTLLQKLLQSIHVPVTM 309 +A A+ Q RDYVLPDDVK L L HRI+LR E + + ++ ++ ++ + VPV Sbjct: 253 AQARAYCQGRDYVLPDDVKALAVPVLSHRIILRNEEKFEGLDERMFIKNIVDTTKVPVVR 312 Query: 310 R 310 R Sbjct: 313 R 313 >C3J795.1 C3J795_9BACI ATPase associated with various cellular activities AAA_3 Length = 318 Score = 343 bits (881), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 159/308 (51%), Positives = 225/308 (73%) Query: 4 MNAVRNNLESCILGKSFEIELLLTALLAGGHVLIEDVPGTGKTQLIRALSRSMSGEYRRI 63 + V N+E I+GK I L LTALLA GHVL+EDVPG GKT L+RAL++S S E +RI Sbjct: 11 LEQVVRNIEQVIVGKRNVIVLSLTALLAKGHVLLEDVPGVGKTMLVRALAKSFSAELKRI 70 Query: 64 QCNPDILPSDITGVSVYHPRDEMFHFRPGPVMTNILLADEINRATTKTQSALLEVMEERN 123 Q PD+LPSD+ GVSVY+P+ + F ++PGP++ +I+LADEINR + KTQSALLE MEE + Sbjct: 71 QFTPDLLPSDVIGVSVYNPKTQQFEYKPGPIVAHIVLADEINRTSPKTQSALLEAMEEGS 130 Query: 124 VTVDGETYPLPHPFMLCATQNPIDFEGTYTLPEAQLDRFMLRISLGYPDADTEKNLLMSH 183 VTVDG T LP PF + ATQNPI++EGTY LPEAQLDRF+L++ +GYP D E +L Sbjct: 131 VTVDGVTRALPQPFFVMATQNPIEYEGTYPLPEAQLDRFLLKLHMGYPSPDEEIEMLNRL 190 Query: 184 QEGQPVDRLTPVTGMDQIAAIQEEIRSVYISDPVLNYLLDVVRQTREHPLVLLGASPRAS 243 ++ P+ + PV +D++ A+Q ++ V++SD V Y++D+++Q+R+H V LG SPR S Sbjct: 191 EKTAPLAEIGPVMSLDELLALQRKVADVHVSDTVKRYIVDLIQQSRQHEAVYLGVSPRGS 250 Query: 244 LSFMMACKAYAFLQERDYVLPDDVKILTPYALGHRILLRPESRLDNVNVDTLLQKLLQSI 303 ++ M A +AYAF+ RD+V+PDDV+ L PY L HR+L+RPE++ D + +T++ +L+ Sbjct: 251 VALMKAAQAYAFIHGRDFVIPDDVQQLAPYVLAHRLLVRPEAKWDKFDAETIIGQLIART 310 Query: 304 HVPVTMRQ 311 VPV R+ Sbjct: 311 PVPVPGRR 318 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,825,241,684 Number of extensions: 75061771 Number of successful extensions: 226059 Number of sequences better than 1.0e-05: 1900 Number of HSP's gapped: 224371 Number of HSP's successfully gapped: 1900 Length of query: 311 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 176 Effective length of database: 1,788,859,178 Effective search space: 314839215328 Effective search space used: 314839215328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)