BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0545.0012.p (416 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFX6.1 B3KFX6_9BACI Putative uncharacterized protein 445 e-123 B1DBJ6.1 B1DBJ6_9BACL Putative uncharacterized protein 292 5e-77 C3J796.1 C3J796_9BACI Putative uncharacterized protein 103 4e-20 B7YDE2.1 B7YDE2_9BACI Putative uncharacterized protein 103 4e-20 A8VV40.1 A8VV40_9BACI Response regulator receiver protein 100 2e-19 >B3KFX6.1 B3KFX6_9BACI Putative uncharacterized protein Length = 415 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 208/402 (51%), Positives = 282/402 (70%), Gaps = 1/402 (0%) Query: 12 IQPGKLAGVLAIWGITLLYVLFQGGKTSFMLFIMVXXXXXXXXXXXXXXXXXXXXXXSLY 71 +QP +LA VLA+W + LLYVLFQGGKTS MLF MV + Sbjct: 12 MQPSRLAAVLAVWCLCLLYVLFQGGKTSLMLFSMVSLLTVYLIGAGFGGVNRVKAHRVVL 71 Query: 72 SEQDKP-DLLYAGGFLRVKLNITIPGFLPLPYVVVREILKRHNGESWVFEESLIPSLKGK 130 ++ + L+AG +RVKL + +PG LP+PY++VRE+L+RHNG+SW FE+S+IP+L+G Sbjct: 72 GGTERVGEQLHAGEQVRVKLEVHVPGLLPMPYMIVREVLQRHNGDSWSFEDSVIPNLRGA 131 Query: 131 GELHFQTPALERGHYTFESTDILAEDIFGLVEHKGTFHAEGQFRVLPRSVFVPRWQLYER 190 G+L FQTP LERG Y F T+ ++EDIFGL+EHKG E FRVLPR++++P+WQ R Sbjct: 132 GKLVFQTPPLERGRYVFSKTECISEDIFGLMEHKGRIEVETDFRVLPRTIYIPKWQRNIR 191 Query: 191 RARLAGPQASLVPSRRETTQINGVRDYVYGDRLTRIHWNATAKTGDWKSKEFEHESIPKT 250 +RL G Q ++ +RRETTQINGVRDYVYGDR++RIHWNATAKTG WKSKEFEHES P+T Sbjct: 192 NSRLGGTQTTVSAARRETTQINGVRDYVYGDRISRIHWNATAKTGSWKSKEFEHESFPRT 251 Query: 251 VLVLDGSASAYGSSNQFELAVSVTSSLLGYGIRERIGIGMCCLDKNTKVFSPAEGSAERQ 310 ++VLD +A Y ++ QFELAVS +SL+ YG +E G G+ + T++F+PA+ + ER Sbjct: 252 MIVLDCAADGYDNAQQFELAVSAAASLIEYGAKEHAGTGLFTAAQETQMFAPADHAGERM 311 Query: 311 KMIQYLIDINAEGRGPLITRLEKAYRMFPKGSYFVLISPQSGQPVLDVMRWAESRGMTPS 370 +MIQ+L+D++ + LI LEK+YR FPKG+ F+LISP SG+ ++MRW E+RGM P Sbjct: 312 RMIQHLVDVDYNRKSKLIAALEKSYRHFPKGALFLLISPMSGKEASEIMRWVETRGMNPC 371 Query: 371 QIHVRNPAAKNRNQEWMDVLASRGITGYSVSSLQELPAVLGG 412 + + + E + +L SRGI+ YSV+SL ELPA LGG Sbjct: 372 FLQIAPSKETTKRDESISLLQSRGISSYSVASLDELPAALGG 413 >B1DBJ6.1 B1DBJ6_9BACL Putative uncharacterized protein Length = 414 Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 156/398 (39%), Positives = 233/398 (58%), Gaps = 7/398 (1%) Query: 23 IWGITLLYVLFQGGKTSFMLFIMVXXXXXXXXXXXXXXXXXXXXXXSLY---SEQDKPDL 79 I+G LLY+LFQGGKT+ MLF+++ S + Sbjct: 19 IYGAALLYLLFQGGKTALMLFMILNVLLLYLALGRWSGISRVSGIRSYRQTGAAAGSDHS 78 Query: 80 LYAGGFLRVKLNITIPGFLPLPYVVVREILKRHNGESWVFEESLIPSLKGKGELHFQTPA 139 L AG L V+L++ +PG P+PYV+VR+ L+RHNG+ FE S +PS K G++ +QTP Sbjct: 79 LTAGSTLDVQLSVKVPGVYPIPYVLVRDRLQRHNGQQLQFEASFVPSFKRSGDVLYQTPP 138 Query: 140 LERGHYTFESTDILAEDIFGLVEHKGTFHAEGQFRVLPRSVFVPRWQLYERRARLAGPQA 199 L+RG Y F +T+ ++ DIFGL EH G F +E F VLP+ V + +W + R A Sbjct: 139 LQRGEYRFVTTECISHDIFGLFEHSGRFGSESAFSVLPQIVPLRQWHSIQSGFRGPFSHA 198 Query: 200 SLVPSRRETTQINGVRDYVYGDRLTRIHWNATAKTGDWKSKEFEHESIPKTVLVLDGSAS 259 + + +ETTQINGVR+Y+YGDRL+RIHWNATAKTGDWKSK FE ES+P+T+++LD A+ Sbjct: 199 AAPRAAKETTQINGVREYLYGDRLSRIHWNATAKTGDWKSKAFERESLPRTLIILDRYAA 258 Query: 260 AYGSS--NQFELAVSVTSSLLGYGIRERIGIGMCCLDKNTKVFSPAEGSAERQKMIQYLI 317 Y +S +FELAVS +SL+ G++ IG+ K + P G+ +R ++++L Sbjct: 259 DYPASGAERFELAVSTAASLIDSGLKGDTAIGLMSAGKKLTILPPKSGAEQRNALMRHLT 318 Query: 318 DINAEGRGPLITRLEKAYRMFPKGSYFVLISPQSGQPVLDVMRWAESRGMTPSQIHVRNP 377 ++A+ L L A +GS+ ++IS SG+ + M W +G+TP +H+ Sbjct: 319 FVDADAEQGLYKSLVAADSRLEQGSFAIVISGTSGREAIRSMEWLSRKGLTPCLMHIGGD 378 Query: 378 AAKNRNQEWMDVLASRGITGYSVSSLQELPAVLGGDRV 415 + ++W ++ S+G + + LQELPAVL G R Sbjct: 379 --RRLEEQWRLMIRSKGWALFELKQLQELPAVLEGGRA 414 >C3J796.1 C3J796_9BACI Putative uncharacterized protein Length = 391 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 90/378 (23%), Positives = 157/378 (41%), Gaps = 34/378 (8%) Query: 25 GITLLYVLFQGGKTSFMLFIMVXXXXXXXXXXXXXXXXXXXXXXSLYSEQDKPDLLYAGG 84 + Y +FQGG S+ LF ++ + + +AG Sbjct: 21 AVLFSYAMFQGGFVSWFLFYSFLPFGLYAFLVAMYPLRRAAVSRTVPARR-----YHAGE 75 Query: 85 FLRVKLNITIPGFLPLPYVVVREILKRHNGE----SWVFEESLIPSLKGKGELHFQTPAL 140 + V + I +P +PL + V E +H GE +W F L + +L Sbjct: 76 SIPVMVRIELPWAVPLATLAVAEEGWKHGGEMIAIAWPFRRHLSCTW---------PLSL 126 Query: 141 ERGHYTFESTDILAEDIFGLVEHKGTFHAEGQFRVLPRSVFVPRWQLYERRARLAGPQAS 200 RG + E+ + A D+FG V +F+A V PR + P + E A+ G A Sbjct: 127 PRGRHQLEAVRLEARDVFGWVNKTASFYAPCTVIVYPRYIEWPPEMVREWFAQ--GKAAR 184 Query: 201 LVPSRRETTQINGVRDYVYGDRLTRIHWNATAKTGDWKSKEFEHESIPKTVLVLDGSASA 260 + RR+ G R+YV GD+++ +HW A+A+ + +KEF+ + ++VLDG+AS Sbjct: 185 TLAYRRDMAVAAGAREYVPGDKMSWVHWKASARRQELMTKEFDEQRNDDWIVVLDGAASP 244 Query: 261 YGSSNQFELAVSVTSSLLGYGIRERIGIGMCCLDKNTKVFSPAEGSAERQKMIQYLIDIN 320 + FE V++ +S+ I E + +G+ K +P + Q ++ L +++ Sbjct: 245 W-----FEELVTLAASVSKALIDEGVPVGLLVAGKECSFLAPRRHDGQWQSILLRLAEVD 299 Query: 321 AEGRGPLITRLEKAYRMFPKGSYFVLISPQSGQPVLDVMRWAESRGMTPSQ---IHVRNP 377 G+ PL L + ++ S S Q + R M P + ++V N Sbjct: 300 VGGQEPLAHVLAEEANWRTAAGCIIVTSALSAQLA------GQLRAMAPKRHIVLYVVNR 353 Query: 378 AAKNRNQEWMDVLASRGI 395 + W D L G+ Sbjct: 354 EWGEDERNWADRLRRSGV 371 >B7YDE2.1 B7YDE2_9BACI Putative uncharacterized protein Length = 391 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 90/378 (23%), Positives = 157/378 (41%), Gaps = 34/378 (8%) Query: 25 GITLLYVLFQGGKTSFMLFIMVXXXXXXXXXXXXXXXXXXXXXXSLYSEQDKPDLLYAGG 84 + Y +FQGG S+ LF ++ + + +AG Sbjct: 21 AVLFSYAMFQGGFVSWFLFYSFLPFGLYAFLVAMYPLRRAAVSRTVPARR-----YHAGE 75 Query: 85 FLRVKLNITIPGFLPLPYVVVREILKRHNGE----SWVFEESLIPSLKGKGELHFQTPAL 140 + V + I +P +PL + V E +H GE +W F L + +L Sbjct: 76 SIPVMVRIELPWAVPLATLAVAEEGWKHGGEMIAIAWPFRRHLSCTW---------PLSL 126 Query: 141 ERGHYTFESTDILAEDIFGLVEHKGTFHAEGQFRVLPRSVFVPRWQLYERRARLAGPQAS 200 RG + E+ + A D+FG V +F+A V PR + P + E A+ G A Sbjct: 127 PRGRHQLEAVRLEARDVFGWVNKTASFYAPCTVIVYPRYIEWPPEMVREWFAQ--GKAAR 184 Query: 201 LVPSRRETTQINGVRDYVYGDRLTRIHWNATAKTGDWKSKEFEHESIPKTVLVLDGSASA 260 + RR+ G R+YV GD+++ +HW A+A+ + +KEF+ + ++VLDG+AS Sbjct: 185 TLAYRRDMAVAAGAREYVPGDKMSWVHWKASARRQELMTKEFDEQRNDDWIVVLDGAASP 244 Query: 261 YGSSNQFELAVSVTSSLLGYGIRERIGIGMCCLDKNTKVFSPAEGSAERQKMIQYLIDIN 320 + FE V++ +S+ I E + +G+ K +P + Q ++ L +++ Sbjct: 245 W-----FEELVTLAASVSKALIDEGVPVGLLVAGKECSFLAPRRHDGQWQSILLRLAEVD 299 Query: 321 AEGRGPLITRLEKAYRMFPKGSYFVLISPQSGQPVLDVMRWAESRGMTPSQ---IHVRNP 377 G+ PL L + ++ S S Q + R M P + ++V N Sbjct: 300 VGGQEPLAHVLAEEANWRTAAGCIIVTSALSAQLA------GQLRAMAPKRHIVLYVVNR 353 Query: 378 AAKNRNQEWMDVLASRGI 395 + W D L G+ Sbjct: 354 EWGEDERNWADRLRRSGV 371 >A8VV40.1 A8VV40_9BACI Response regulator receiver protein Length = 418 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 88/360 (24%), Positives = 151/360 (41%), Gaps = 20/360 (5%) Query: 16 KLAGVLAIWGITLLYVLFQGGKTSFMLFIMVXXXXXXXXXXXXXXXXXXXXXXSLYSEQD 75 + A VLAI G Y +FQGG S+ LF V + Sbjct: 17 RAALVLAIVGGLFSYAMFQGGFVSWFLFYSVTVLIVLMVLYALIPLGHFEVKRII----- 71 Query: 76 KPDLLYAGGFLRVKLNITIPGFLPLPYVVVREILKRH-----NGESWVFEESLIPSLKGK 130 L AG +R+++ IT P Y+ V++ ++R G E PS+K + Sbjct: 72 GQSALPAGSDVRIQVQITRKWPFPFLYLGVKDEMERRLERQVGGRQ--SEMIFYPSVKKE 129 Query: 131 GELHFQTPALERGHYTFESTDILAEDIFGLVEHKGTFHAEGQFRVLPRSVFVPRWQLYER 190 +Q + RG Y F T + D+FG V + V P + W+ +ER Sbjct: 130 LVYDYQVEDIRRGSYQFLGTWLTTSDVFGWVTKRRFTTTPDWLLVYPDYHPIDSWEAFER 189 Query: 191 -RARLAGPQASLVPSRRETTQINGVRDYVYGDRLTRIHWNATAKTGDWKSKEFEHESIPK 249 V R T I G R+YV GD+LT I W TA++ +KEFE + I + Sbjct: 190 HETETRQSNQDFVEDR---TSIAGAREYVPGDKLTSIDWKVTARSTKLMTKEFE-DYIGQ 245 Query: 250 TVLVLDGS---ASAYGSSNQFELAVSVTSSLLGYGIRERIGIGMCCLDKNTKVFSPAEGS 306 ++L + + Y + +E + + +S++ Y ++ +GM + + T+ F GS Sbjct: 246 NFMILLSNFIPDATYDTLQSYEEGIELATSIIMYAYERQLDVGMMTVGRYTQAFPLQNGS 305 Query: 307 AERQKMIQYLIDINAEGRGPLITRLEKAYRMFPKGSYFVLISPQSGQPVLDVMRWAESRG 366 ++K++ +L +I + G +L + GS ++I+ +L ++ +RG Sbjct: 306 DHQKKLVTHLSEIQPDEEGSFAVKLVDVEQELTSGSTVIVIATALDDDLLSQLKTLAARG 365 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,449,438,952 Number of extensions: 100501919 Number of successful extensions: 196585 Number of sequences better than 1.0e-05: 230 Number of HSP's gapped: 196660 Number of HSP's successfully gapped: 230 Length of query: 416 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 278 Effective length of database: 1,760,596,133 Effective search space: 489445724974 Effective search space used: 489445724974 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)