BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0545.0004.p
         (115 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFY4.1 B3KFY4_9BACI Iojap-like protein                              166   8e-40
B1DBK4.1 B1DBK4_9BACL Iojap-like protein                              149   7e-35
Q5WHH8.1 Q5WHH8_BACSK Putative uncharacterized protein                135   1e-30
B1YKR7.1 B1YKR7_EXIS2 Iojap-like protein                              130   4e-29
Q9KD89.1 Q9KD89_BACHD BH1328 protein                                  128   1e-28

>B3KFY4.1 B3KFY4_9BACI Iojap-like protein
          Length = 115

 Score =  166 bits (419), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 79/115 (68%), Positives = 90/115 (78%)

Query: 1   MTIESSXXXXXXXXXXXXXXXMNVVALDLRSVSPISDYFVICHGNSDTQVQAIATEVRKV 60
           MT++ +               M++V LDLR +S I+DYFVICHGNSDTQVQAIATEVRK 
Sbjct: 1   MTLKPNELLNVAVAAAEDKKAMDIVVLDLRGISLIADYFVICHGNSDTQVQAIATEVRKR 60

Query: 61  VHEAGGVIRGIEGMDAARWVLMDLGDVIVHVFHRDEREYYNIERLWSDAKVVEPV 115
            H+ G  +RG+EGMDAARWVLMDLGDVIVH+FHRDEREYYNIERLWSDAKVVE V
Sbjct: 61  AHDEGVALRGLEGMDAARWVLMDLGDVIVHIFHRDEREYYNIERLWSDAKVVENV 115


>B1DBK4.1 B1DBK4_9BACL Iojap-like protein
          Length = 115

 Score =  149 bits (377), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 84/113 (74%)

Query: 1   MTIESSXXXXXXXXXXXXXXXMNVVALDLRSVSPISDYFVICHGNSDTQVQAIATEVRKV 60
           MT+ S                  +VAL+L+ +S ++DYFVICHGNSDTQVQAI TE+RK 
Sbjct: 1   MTVHSDELMQITVAAAEDKKAHRIVALNLKEISLVADYFVICHGNSDTQVQAITTEIRKQ 60

Query: 61  VHEAGGVIRGIEGMDAARWVLMDLGDVIVHVFHRDEREYYNIERLWSDAKVVE 113
               G  ++GIEGMD+ARWVL+DLGDVIVHVFHRDER+YYNIERLWSDAKVVE
Sbjct: 61  AEMRGVRVKGIEGMDSARWVLIDLGDVIVHVFHRDERDYYNIERLWSDAKVVE 113


>Q5WHH8.1 Q5WHH8_BACSK Putative uncharacterized protein
          Length = 117

 Score =  135 bits (339), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 76/92 (82%)

Query: 22  MNVVALDLRSVSPISDYFVICHGNSDTQVQAIATEVRKVVHEAGGVIRGIEGMDAARWVL 81
           M + ALD+R +SPI+DYF+ICHGNS+ QVQAIA E++KV  EAG  I+ +EG D ARWVL
Sbjct: 18  MQITALDMRGISPIADYFIICHGNSEKQVQAIAHELKKVSQEAGLDIKRLEGYDVARWVL 77

Query: 82  MDLGDVIVHVFHRDEREYYNIERLWSDAKVVE 113
           +D+GDV+VH+FH+DER YYN+E+LW DA  V+
Sbjct: 78  IDIGDVVVHIFHKDERLYYNLEKLWGDAAQVD 109


>B1YKR7.1 B1YKR7_EXIS2 Iojap-like protein
          Length = 115

 Score =  130 bits (327), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 76/91 (83%)

Query: 23  NVVALDLRSVSPISDYFVICHGNSDTQVQAIATEVRKVVHEAGGVIRGIEGMDAARWVLM 82
           ++V LD+ S+SPI+DYFVIC GNS+ QVQAIA EV++V H+    I+ +EGMDAARWVL 
Sbjct: 21  DIVVLDMSSISPIADYFVICEGNSEKQVQAIAREVKEVAHKNELPIKRLEGMDAARWVLA 80

Query: 83  DLGDVIVHVFHRDEREYYNIERLWSDAKVVE 113
           DL +V+VHVFHRD+R+YYN+E+LW+DA  VE
Sbjct: 81  DLENVVVHVFHRDDRDYYNLEKLWADAPKVE 111


>Q9KD89.1 Q9KD89_BACHD BH1328 protein
          Length = 117

 Score =  128 bits (322), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 74/91 (81%)

Query: 23  NVVALDLRSVSPISDYFVICHGNSDTQVQAIATEVRKVVHEAGGVIRGIEGMDAARWVLM 82
            VVAL+++ +S I+D+F+ICHGNS+ QVQAIA E++KV  E G  I+ +EG + ARWVL+
Sbjct: 21  QVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIEIKRLEGYEQARWVLI 80

Query: 83  DLGDVIVHVFHRDEREYYNIERLWSDAKVVE 113
           DLGDV+VHVFH+DER YYN+E+LW DA  VE
Sbjct: 81  DLGDVVVHVFHKDERAYYNLEKLWGDAPTVE 111


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 565,956,805
Number of extensions: 19026661
Number of successful extensions: 46420
Number of sequences better than 1.0e-05: 1314
Number of HSP's gapped: 46200
Number of HSP's successfully gapped: 1314
Length of query: 115
Length of database: 3,060,696,203
Length adjustment: 82
Effective length of query: 33
Effective length of database: 2,288,172,973
Effective search space: 75509708109
Effective search space used: 75509708109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)