BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0050.p (419 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9AZC5.1 A9AZC5_HERA2 Putative uncharacterized protein 184 2e-44 Q8KL07.2 Q8KL07_RHIEC Hypothetical conserved protein 176 5e-42 C3JJH0.1 C3JJH0_RHOER Putative uncharacterized protein 167 2e-39 C0ZVZ5.1 C0ZVZ5_RHOE4 Putative uncharacterized protein 164 2e-38 C0WPD6.1 C0WPD6_LACBU Putative uncharacterized protein 158 1e-36 >A9AZC5.1 A9AZC5_HERA2 Putative uncharacterized protein Length = 477 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/257 (38%), Positives = 143/257 (55%), Gaps = 11/257 (4%) Query: 170 MNAFGSRTTGSEGHNQFIAWLEQQVADMGLSINRDNYTFDRWEEKKSSIII-----DNQE 224 + G R TGSE H FI +L ++ +G + RD Y F RW+ + S+ + + Sbjct: 16 LEQLGPRLTGSEAHQAFIEFLATELTSLGCEVQRDRYYFTRWQAQNWSLALLDSAGNETS 75 Query: 225 IHVSSAYPYSGETDANGVAGELVYTKR--GDYAKAKGKIAVVEVKNLKHFPIGLVMNVRK 282 I S YPYSG T G+ GELV + G++ +A GKIA+VEV + P L ++ K Sbjct: 76 IPCSFYYPYSGSTPPEGIIGELVDCGKSPGNFQQAAGKIALVEVA-VPALPTMLFLHPTK 134 Query: 283 AFPARSKIPSSEGDLVLTTGLKEAHLDEAKAMGVKAVILVWEGVSDEKVEQQYLPFTTDY 342 F K+P + L + L +L AK GVK VI +W +S + QYLPFTT Y Sbjct: 135 -FAQAQKLPKLLRNPTLGSFLTGPNLAAAKQAGVKGVICIWSKISAANADAQYLPFTTSY 193 Query: 343 AGIPAVWINGTDGQKVIHAAKVHQEGTVILEADVQKDAPTESFYVKIEGRNKNESIIVNT 402 PA+W+N GQ++ A V Q+ LEA + + PT+S YV + G+ NES+++NT Sbjct: 194 QACPALWVNAAVGQQLKQA--VGQKIRFTLEATLTEQCPTDSLYVVLPGQQSNESLLINT 251 Query: 403 HTDGVNVIEEDGAIGML 419 HTDG N EE+GA+G+L Sbjct: 252 HTDGPNAPEENGALGLL 268 >Q8KL07.2 Q8KL07_RHIEC Hypothetical conserved protein Length = 537 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 183/336 (54%), Gaps = 24/336 (7%) Query: 99 FQGMGRKRAMFI----------LVVRKALFSLAALTVSVLWVINLYAQPIVKSIELPADR 148 QG GR+ A+ I LV+++ FS LT + ++ P S R Sbjct: 5 LQGHGRRAAIGIASIRDREARRLVLKRRDFSTVGLTALLAGIVF----PAFPSTGFSEQR 60 Query: 149 KSEIDPAKLDPPAVMLKNIETMNAFGSRTTGSEGHNQFIAWLEQQVADMGLSINRDNYTF 208 K I PA D + I+ +N+FG R TGS + I +L ++ MGL + RD T Sbjct: 61 KPSI-PALPDQ-RKLWSWIKRLNSFGPRLTGSPAQARAIDYLAGELRGMGLEVKRDQLTM 118 Query: 209 DRWEEKKSSIIIDNQE-IHVSSAYPYSGETDANGVAGELV-YTKR-GDYAKAKGKIAVVE 265 RW + ++ + N E I V++ +PYSG T G++G++V + R + KA+GKIAVV Sbjct: 119 RRWMPRTTAFKLSNGEVIEVAAPFPYSGLTPPGGISGKMVLFNGRVQAFEKARGKIAVVT 178 Query: 266 VK--NLKHFPIGLVMNVRKAFPARSKIPSSEGDLVLTTGLKEAHLDEAKAMGVKAVILVW 323 VK +L F + LV N R + P P + L TGL +D+A+ GV AV+ ++ Sbjct: 179 VKRRDLAAF-LELVTNRRGSLPEGIDFPKAV-TTPLITGLLGVPIDKAREAGVLAVVCIF 236 Query: 324 EGVSDEKVEQQYLPFTTDYAGIPAVWINGTDGQKVIHAAKVHQEGTVILEADVQKDAPTE 383 EGVS+ +++ Q LPFTT Y G+PA+W+ ++G+++ A K G + L+ ++ D T+ Sbjct: 237 EGVSEVQLKGQVLPFTTPYWGLPAIWVAQSEGERIKAAIKHGLSGRLTLDGTLE-DVATD 295 Query: 384 SFYVKIEGRNKNESIIVNTHTDGVNVIEEDGAIGML 419 + Y + G N E+II+NTHTDG N EE+G G+L Sbjct: 296 TIYAVLPGCNLLETIIINTHTDGPNACEENGGAGVL 331 >C3JJH0.1 C3JJH0_RHOER Putative uncharacterized protein Length = 482 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 151/264 (57%), Gaps = 11/264 (4%) Query: 162 VMLKNIETMNAFGSRTTGSEGHNQFIAWLEQQVADMGLSINRDNYTFDRWEEKKSS---- 217 ++L + ++A G R TGS H+ + + ++ ++GL + RD++TF+RW+ +S Sbjct: 11 LLLAGQQRLDARGPRLTGSPSHHAVVEEVANELTELGLEVRRDSHTFERWDLPATSDGLR 70 Query: 218 IIIDNQEIHVSSAYPYSGETDANGVAGELVY--TKRGDYAKAKGKIAVVEVKNLKHFPIG 275 I + I VSSA+PYSG T G++ LVY +R ++ AKG IAV+EV ++ P Sbjct: 71 IELPTGPIKVSSAFPYSGLTGPQGISAPLVYVSARRPKWSAAKGAIAVIEVPHID-LPRK 129 Query: 276 LVMNVRKAFPARSKIPSSEGDLVLTTGLKEAHLDEAKAMGVKAVILVWEGVSDEKVEQQY 335 L+++ + + VL+ L LD+A+ GV VI VW ++ + QY Sbjct: 130 LLVSEWGPIATDETLRNP----VLSATLLGPKLDKARKAGVLGVIAVWRDIAPDNALGQY 185 Query: 336 LPFTTDYAGIPAVWINGTDGQKVIHAAKVHQEGTVILEADVQKDAPTESFYVKIEGRNKN 395 LPFT Y IPAVW+ G +G KV+ AA+ Q T++L+A + D T++ + G + Sbjct: 186 LPFTQPYHDIPAVWVAGDEGAKVVAAARSGQLATLVLDATLHPDTRTDTVWAVSPGTSPE 245 Query: 396 ESIIVNTHTDGVNVIEEDGAIGML 419 E+I++ TH+DG N +EE+G +GML Sbjct: 246 ETILLITHSDGTNGVEENGHLGML 269 >C0ZVZ5.1 C0ZVZ5_RHOE4 Putative uncharacterized protein Length = 539 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/266 (35%), Positives = 153/266 (57%), Gaps = 15/266 (5%) Query: 162 VMLKNIETMNAFGSRTTGSEGHNQFIAWLEQQVADMGLSINRDNYTFDRWEEKKSS---- 217 ++L + ++A G R TGS H+ + + ++ ++GL + RD++TF+RW+ +S Sbjct: 68 LLLAGQQRLDARGPRLTGSPSHHAVVEEVANELTELGLEVRRDSHTFERWDLPATSDGLR 127 Query: 218 IIIDNQEIHVSSAYPYSGETDANGVAGELVY--TKRGDYAKAKGKIAVVEVKNLKHFPIG 275 I + I VSSA+PYSG T G++ LV+ +R ++ AKG IAV+EV ++ P Sbjct: 128 IELPTGPIKVSSAFPYSGLTGPQGISAPLVHVSARRPKWSLAKGAIAVIEVPHID-LPRK 186 Query: 276 LVMNVRKAFPARSKIPSSEG--DLVLTTGLKEAHLDEAKAMGVKAVILVWEGVSDEKVEQ 333 L+++ I + E + VL+ L LD+A+ GV VI VW ++ + Sbjct: 187 LLVS------EWGPIANDETLRNPVLSATLLGPKLDKARKAGVLGVIAVWRDIAPDNALG 240 Query: 334 QYLPFTTDYAGIPAVWINGTDGQKVIHAAKVHQEGTVILEADVQKDAPTESFYVKIEGRN 393 QYLPFT Y IPAVW+ G +G KV+ AA+ Q T++L+A + D T++ + G + Sbjct: 241 QYLPFTQPYHDIPAVWVAGDEGAKVVAAARSGQLATLVLDATLHPDTRTDTVWAVSPGTS 300 Query: 394 KNESIIVNTHTDGVNVIEEDGAIGML 419 E+I++ TH+DG N +EE+G +GML Sbjct: 301 PEETILLITHSDGTNGVEENGHLGML 326 >C0WPD6.1 C0WPD6_LACBU Putative uncharacterized protein Length = 450 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 142/255 (55%), Gaps = 8/255 (3%) Query: 170 MNAFGSRTTGSEGHNQFIAWLEQQVADMGLSINRDNYTFDRWEEKKSSIII--DNQEIHV 227 +N++G R TG++ HN+FI +L+ +V+ +G I R + F+R S + + ++ I + Sbjct: 15 LNSYGPRLTGTDSHNRFIRFLQTEVSKLGYPIKRAPFNFNRTTIDNSQLTMTSNHTPIQL 74 Query: 228 SSAYPYSGETDANGVAGELVYTKRGDYAKAKGKIAVVEVKNLKHFPIGLVMNVRKAFPAR 287 S PYSG T G+ L + + K +GKIAV+ V+NL P +M +FP Sbjct: 75 SGPVPYSGITGPEGITAPLKFCHKIITDKVRGKIAVINVRNLT-IPSWPLMQQIDSFPQH 133 Query: 288 SKIPSSEGDLVLTTGLKEAHLDEAKAMGVKAVILVWEGVSDEKVEQQYLPFTTDYAGIPA 347 P ++++ L + +AK G K V+L+W +S+E + LPFT DY GIPA Sbjct: 134 KHKPGLLRHPLVSSTLIINTILKAKNKGAKGVVLIWHNISEELAVNEILPFTNDYLGIPA 193 Query: 348 VWINGTDGQKVIHAAKVHQEGTVIL--EADVQKDAPTESFYVKIEG-RNKNESIIVNTHT 404 VW++ + Q+ + H TV L +++ TESF I+G +KN++II+NTHT Sbjct: 194 VWVH--EKQQPLLEKTCHANKTVTLTINGHAKEEVTTESFSTMIKGTESKNQTIIINTHT 251 Query: 405 DGVNVIEEDGAIGML 419 DG N IE++G I +L Sbjct: 252 DGPNAIEDNGPIALL 266 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,360,015,798 Number of extensions: 94488958 Number of successful extensions: 212273 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 212226 Number of HSP's successfully gapped: 35 Length of query: 419 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 281 Effective length of database: 1,760,596,133 Effective search space: 494727513373 Effective search space used: 494727513373 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)