BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0048.p (221 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1FWL8.1 B1FWL8_9BURK Putative uncharacterized protein 182 2e-44 B2SWP2.1 B2SWP2_BURPP Putative uncharacterized protein 182 2e-44 B2JKE1.1 B2JKE1_BURP8 Putative uncharacterized protein 178 3e-43 A9IKJ6.1 A9IKJ6_BORPD Putative uncharacterized protein 174 5e-42 B2UI66.1 B2UI66_RALPJ Putative uncharacterized protein 174 7e-42 >B1FWL8.1 B1FWL8_9BURK Putative uncharacterized protein Length = 208 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/198 (47%), Positives = 122/198 (61%), Gaps = 8/198 (4%) Query: 27 SCTAFLGVGVVASGSLQHVVTTVKDALSDRELTQLLIFNDSTGKPIDVDFRGKTDDVLKR 86 +CTAF G ++ASG L V VK+ L+ E +L+F+D++ P++ D RG +D++ R Sbjct: 7 TCTAFEGHRLIASGELPRVALAVKEVLARGEQAPVLVFDDASAAPVEFDLRGSAEDIVAR 66 Query: 87 L--GEQFGDSSSTEVNHQT------TRRVGRPKLGVVSGEVTLLPRHWEWLKCQPGGASV 138 L E+ D S+ R GRP+LGVV+ EVTLLPRHW+WL QPGGASV Sbjct: 67 LNEAERAADPSTDATTAAAAADTSTPRGRGRPRLGVVAREVTLLPRHWDWLNAQPGGASV 126 Query: 139 TLRKLIDEARRTGEQQSTIRESQEATYNFMTAMAGDFHQYEEALRALYAGDSDRFYHFID 198 LRKL++ AR TGE R +QEA Y FMTA+AG+ YE+A RALYAGD RF I Sbjct: 127 ALRKLVETARATGEHVDRRRVAQEAVYRFMTALAGNLPDYEDATRALYAGDRPRFEERIA 186 Query: 199 DWAPDIRXXXXRLAANAF 216 W D+R RLA NAF Sbjct: 187 QWPEDVRRYTLRLAENAF 204 >B2SWP2.1 B2SWP2_BURPP Putative uncharacterized protein Length = 207 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/197 (47%), Positives = 120/197 (60%), Gaps = 7/197 (3%) Query: 27 SCTAFLGVGVVASGSLQHVVTTVKDALSDRELTQLLIFNDSTGKPIDVDFRGKTDDVLKR 86 SCTAF G +ASG+L V V+D L+ E +L+F+D T +P++ D RG D+++ R Sbjct: 7 SCTAFEGHRRIASGALPDVALAVRDVLARGEQGPVLVFDDVTSRPVEFDLRGTPDEIVAR 66 Query: 87 LGEQFGDSSSTEVNH-------QTTRRVGRPKLGVVSGEVTLLPRHWEWLKCQPGGASVT 139 L Q + S V H T R GRPKLGVV+ E+TLLPRHW+WL Q GGASV Sbjct: 67 LASQHDGAESDHVAHAAGCATEDTPRGRGRPKLGVVAREITLLPRHWDWLNGQSGGASVA 126 Query: 140 LRKLIDEARRTGEQQSTIRESQEATYNFMTAMAGDFHQYEEALRALYAGDSDRFYHFIDD 199 LRKL+D AR GE + R +QEA Y FMT +AG+ +YE+A RALYA D RF + Sbjct: 127 LRKLVDAARVAGEHKDRQRAAQEAVYRFMTTLAGNLPRYEDATRALYADDRPRFDEVVAA 186 Query: 200 WAPDIRXXXXRLAANAF 216 W D+R RLA AF Sbjct: 187 WPQDVRDYTLRLANTAF 203 >B2JKE1.1 B2JKE1_BURP8 Putative uncharacterized protein Length = 207 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 95/191 (49%), Positives = 114/191 (59%), Gaps = 4/191 (2%) Query: 26 FSCTAFLGVGVVASGSLQHVVTTVKDALSDRELTQLLIFNDSTGKPIDVDFRGKTDDVLK 85 +CTAF G +ASG L+ V VK A +LIF+D TG+ +++D RG +VL Sbjct: 5 ITCTAFEGARCIASGELKDVALAVKAATGRDGGASVLIFDDRTGQLVELDLRGSASEVLA 64 Query: 86 RLGEQ-FGDSSSTEVNH---QTTRRVGRPKLGVVSGEVTLLPRHWEWLKCQPGGASVTLR 141 RL Q GD+ E TR GRPKLGVV+ EVTLLPRHWEWL Q GGASV LR Sbjct: 65 RLAAQETGDTQPPEPASDAASATRGRGRPKLGVVAREVTLLPRHWEWLNAQSGGASVALR 124 Query: 142 KLIDEARRTGEQQSTIRESQEATYNFMTAMAGDFHQYEEALRALYAGDSDRFYHFIDDWA 201 KL+D AR E + +R +QEA Y FMT MAGD YEEA RALYA D+ RF W Sbjct: 125 KLVDAARVASEGKDRVRRAQEAAYRFMTTMAGDLAGYEEATRALYANDAARFDSMTAAWP 184 Query: 202 PDIRXXXXRLA 212 D+R +LA Sbjct: 185 VDVREHARKLA 195 >A9IKJ6.1 A9IKJ6_BORPD Putative uncharacterized protein Length = 204 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 89/185 (48%), Positives = 118/185 (63%) Query: 28 CTAFLGVGVVASGSLQHVVTTVKDALSDRELTQLLIFNDSTGKPIDVDFRGKTDDVLKRL 87 CTAF G ++ASG L V V+ A + +LI++D+TG+ IDVD RG +++ RL Sbjct: 11 CTAFDGHRLIASGELPQVALAVRRAHDNHAAGPVLIYSDATGQLIDVDLRGSEAEIMGRL 70 Query: 88 GEQFGDSSSTEVNHQTTRRVGRPKLGVVSGEVTLLPRHWEWLKCQPGGASVTLRKLIDEA 147 +++ E + + R GRP+LGVVS EVTLLPRHWEWL QPGGASV LRKL++EA Sbjct: 71 APPQSPANAAEADAASPRGRGRPRLGVVSREVTLLPRHWEWLARQPGGASVALRKLVEEA 130 Query: 148 RRTGEQQSTIRESQEATYNFMTAMAGDFHQYEEALRALYAGDSDRFYHFIDDWAPDIRXX 207 R S RE QEA Y FM+++AGD +EEA RAL+ D+ RF H + +W D+R Sbjct: 131 RHNDTGASRRRERQEAAYRFMSSIAGDLPGFEEAARALFTDDAPRFAHHVANWPLDVRNH 190 Query: 208 XXRLA 212 RLA Sbjct: 191 ALRLA 195 >B2UI66.1 B2UI66_RALPJ Putative uncharacterized protein Length = 204 Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 86/190 (45%), Positives = 116/190 (61%) Query: 27 SCTAFLGVGVVASGSLQHVVTTVKDALSDRELTQLLIFNDSTGKPIDVDFRGKTDDVLKR 86 +CTAF G +A+G ++ V VK + +Q+L+F+ +T +P++ D RG DVL R Sbjct: 8 ACTAFAGTRRLAAGPVRDVARVVKIHVDAHPESQVLVFDHTTAQPVEFDLRGTVGDVLAR 67 Query: 87 LGEQFGDSSSTEVNHQTTRRVGRPKLGVVSGEVTLLPRHWEWLKCQPGGASVTLRKLIDE 146 L ++ + R GRPKLGV++ EVTLLPRHW+WL QPGGASVTLRKL+++ Sbjct: 68 LDSTAPSATQPAESESRPRGPGRPKLGVIAREVTLLPRHWDWLAAQPGGASVTLRKLVED 127 Query: 147 ARRTGEQQSTIRESQEATYNFMTAMAGDFHQYEEALRALYAGDSDRFYHFIDDWAPDIRX 206 ARR E R +QEA Y FM+AMAGD +EEA RAL+A D+ F W D+R Sbjct: 128 ARRAAEGADRRRVAQEAAYRFMSAMAGDAAGFEEATRALFAADAVAFESLTHSWPADVRD 187 Query: 207 XXXRLAANAF 216 LA+ AF Sbjct: 188 FARELASRAF 197 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,273,949,001 Number of extensions: 50171100 Number of successful extensions: 124995 Number of sequences better than 1.0e-05: 107 Number of HSP's gapped: 124869 Number of HSP's successfully gapped: 107 Length of query: 221 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 90 Effective length of database: 1,826,543,238 Effective search space: 164388891420 Effective search space used: 164388891420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)