BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0043.p (200 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8FC54.1 A8FC54_BACP2 Acetyltransferase EC=2.3.1.- 293 8e-78 B4AF35.1 B4AF35_BACPU Acetyltransferase 291 3e-77 C2XUB7.1 C2XUB7_BACCE Ribosomal-protein-serine acetyltransferase 268 3e-70 A3I3G2.1 A3I3G2_9BACI Ribosomal-protein-serine acetyltransferase 265 2e-69 Q81D99.1 Q81D99_BACCR Ribosomal-protein-serine acetyltransferase... 256 5e-67 >A8FC54.1 A8FC54_BACP2 Acetyltransferase EC=2.3.1.- Length = 187 Score = 293 bits (749), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 131/185 (70%), Positives = 157/185 (84%) Query: 4 MEKSSHVYMVTDRLVIRQFGLQDTESFYKYRANPAVAQFQSWENYTYEDAESFVSKQMDH 63 M+ +++V+ T+R+VIRQF LQD E+FY+YRANP++A +QSWENYTYE AESFV +QM Sbjct: 1 MKNANNVFTRTNRIVIRQFELQDIEAFYQYRANPSIATYQSWENYTYEQAESFVQQQMTQ 60 Query: 64 TPGQPGTWFQFAIVSADSDQLIGDCALHTLLDEPRIVELGFTLAPDHQGNGYIHEALEAI 123 TP QPGTWFQ+AI + S+QL+GDC +HTL EPRIVE+GFTLAP+ QG GYIHEAL ++ Sbjct: 61 TPDQPGTWFQYAIALSKSNQLVGDCVIHTLDSEPRIVEIGFTLAPEFQGKGYIHEALSSL 120 Query: 124 LNYIFRMLGKHKAIAFTDVRNEKSIRVLERLGMRREGHLLQNYMSKGKWVDEYQYAVLQS 183 + YIF L KHK IAFTDVRNEKSIRVLERL MRREGHLLQNYMSKG WVDEYQYA+LQS Sbjct: 121 IEYIFTTLNKHKIIAFTDVRNEKSIRVLERLDMRREGHLLQNYMSKGHWVDEYQYAILQS 180 Query: 184 EWLSR 188 EW ++ Sbjct: 181 EWAAK 185 >B4AF35.1 B4AF35_BACPU Acetyltransferase Length = 187 Score = 291 bits (744), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 131/185 (70%), Positives = 157/185 (84%) Query: 4 MEKSSHVYMVTDRLVIRQFGLQDTESFYKYRANPAVAQFQSWENYTYEDAESFVSKQMDH 63 M+ +++++ T+R+VIRQF QD E FY+YRANP++A+FQSWENYTYE+AESFV QM Sbjct: 1 MKNANNIFTKTNRVVIRQFDRQDIEPFYQYRANPSIAKFQSWENYTYEEAESFVQHQMTQ 60 Query: 64 TPGQPGTWFQFAIVSADSDQLIGDCALHTLLDEPRIVELGFTLAPDHQGNGYIHEALEAI 123 P QPG+WFQ+AI ++S+QLIGDCA+HTL EPRIVE+GFTLAP++QG GYIHEAL AI Sbjct: 61 KPNQPGSWFQYAIALSESNQLIGDCAIHTLDSEPRIVEIGFTLAPEYQGIGYIHEALSAI 120 Query: 124 LNYIFRMLGKHKAIAFTDVRNEKSIRVLERLGMRREGHLLQNYMSKGKWVDEYQYAVLQS 183 YIF L KHK IAFTDVRNEKSIRVLERL MRREGHLLQNYMSKG WVDEYQYA++QS Sbjct: 121 FEYIFMTLNKHKIIAFTDVRNEKSIRVLERLEMRREGHLLQNYMSKGHWVDEYQYAIVQS 180 Query: 184 EWLSR 188 EW ++ Sbjct: 181 EWAAK 185 >C2XUB7.1 C2XUB7_BACCE Ribosomal-protein-serine acetyltransferase Length = 181 Score = 268 bits (684), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 118/181 (65%), Positives = 154/181 (85%) Query: 4 MEKSSHVYMVTDRLVIRQFGLQDTESFYKYRANPAVAQFQSWENYTYEDAESFVSKQMDH 63 MEK V+ TDRL++R+ + DT+ F+ YR+NP VA+FQSW+NY Y +AE+FV++Q+++ Sbjct: 1 MEKYDQVFGKTDRLILRRLSIDDTKDFHFYRSNPEVAKFQSWDNYQYHEAETFVNEQINN 60 Query: 64 TPGQPGTWFQFAIVSADSDQLIGDCALHTLLDEPRIVELGFTLAPDHQGNGYIHEALEAI 123 P QPGTWFQFAI A+++++IGDCALHTLL EPRIVE+GFTL+P++QGNGY EA+ A+ Sbjct: 61 NPNQPGTWFQFAIALAENNKMIGDCALHTLLSEPRIVEIGFTLSPEYQGNGYATEAIYAL 120 Query: 124 LNYIFRMLGKHKAIAFTDVRNEKSIRVLERLGMRREGHLLQNYMSKGKWVDEYQYAVLQS 183 L+YIF LGKHK IAF+DVRN KSI VLER+GMRREGHLLQNYM KG+W+DEYQY++L+S Sbjct: 121 LHYIFHSLGKHKVIAFSDVRNNKSISVLERVGMRREGHLLQNYMLKGQWIDEYQYSILKS 180 Query: 184 E 184 E Sbjct: 181 E 181 >A3I3G2.1 A3I3G2_9BACI Ribosomal-protein-serine acetyltransferase Length = 213 Score = 265 bits (677), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 117/184 (63%), Positives = 148/184 (80%) Query: 4 MEKSSHVYMVTDRLVIRQFGLQDTESFYKYRANPAVAQFQSWENYTYEDAESFVSKQMDH 63 MEK+ V+ TDRL++R+F D ESFY YRA+P +A++QSWENY Y +A++FV Q++H Sbjct: 11 MEKNMEVFAGTDRLLLRKFQTDDIESFYTYRADPEIAKYQSWENYQYHEAKTFVHHQINH 70 Query: 64 TPGQPGTWFQFAIVSADSDQLIGDCALHTLLDEPRIVELGFTLAPDHQGNGYIHEALEAI 123 P QPGTW+QFAI ++++LI DCALHT L EPRIVE+GFTL+P+HQG GY EA+ A+ Sbjct: 71 VPNQPGTWYQFAIALKETNELIEDCALHTPLSEPRIVEIGFTLSPEHQGKGYAKEAVCAL 130 Query: 124 LNYIFRMLGKHKAIAFTDVRNEKSIRVLERLGMRREGHLLQNYMSKGKWVDEYQYAVLQS 183 +NY+F L KHK IAFTDVRN SI VLER+GMRREGH LQNYMSKG+WV+EYQY++L S Sbjct: 131 INYLFHSLKKHKVIAFTDVRNNNSIAVLERIGMRREGHFLQNYMSKGQWVNEYQYSILAS 190 Query: 184 EWLS 187 EW S Sbjct: 191 EWES 194 >Q81D99.1 Q81D99_BACCR Ribosomal-protein-serine acetyltransferase EC=2.3.1.- Length = 186 Score = 256 bits (655), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 113/182 (62%), Positives = 150/182 (82%) Query: 4 MEKSSHVYMVTDRLVIRQFGLQDTESFYKYRANPAVAQFQSWENYTYEDAESFVSKQMDH 63 ME + V+ TD LV+R+F + DT F+ YR+NP VA+FQSW NY Y +A++FV++Q+ + Sbjct: 1 MENDNQVFWRTDCLVLRRFSMDDTNYFHFYRSNPEVAKFQSWVNYQYHEAKTFVNEQVKN 60 Query: 64 TPGQPGTWFQFAIVSADSDQLIGDCALHTLLDEPRIVELGFTLAPDHQGNGYIHEALEAI 123 P PGTWFQFAI +++++IGDCALHTL++EPRIVE+GFTL+P++QG GY +A+ A+ Sbjct: 61 NPNLPGTWFQFAIALTENNKIIGDCALHTLVNEPRIVEIGFTLSPEYQGKGYATKAVCAL 120 Query: 124 LNYIFRMLGKHKAIAFTDVRNEKSIRVLERLGMRREGHLLQNYMSKGKWVDEYQYAVLQS 183 L+YIF LGKHK IAF+DVRN KSI VLER+GMRREGHLLQNYM KG+W+DEYQY++L+S Sbjct: 121 LSYIFHSLGKHKVIAFSDVRNNKSISVLERVGMRREGHLLQNYMLKGQWIDEYQYSILKS 180 Query: 184 EW 185 EW Sbjct: 181 EW 182 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.134 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,222,829,978 Number of extensions: 46958875 Number of successful extensions: 109164 Number of sequences better than 1.0e-05: 2038 Number of HSP's gapped: 109071 Number of HSP's successfully gapped: 2038 Length of query: 200 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 71 Effective length of database: 1,845,385,268 Effective search space: 131022354028 Effective search space used: 131022354028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)