BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0041.p
         (96 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0ZG66.1 C0ZG66_BREBN Putative uncharacterized protein                102   1e-20
B1DA30.1 B1DA30_9BACL Transcriptional regulator, HxlR family           79   1e-13
C0TKL4.1 C0TKL4_9PSEU Predicted transcriptional regulator              75   2e-12
C4RMZ5.1 C4RMZ5_9ACTO HxlR family transcriptional regulator            72   2e-11
C0VAQ0.1 C0VAQ0_9MICO Predicted transcriptional regulator              70   4e-11

>C0ZG66.1 C0ZG66_BREBN Putative uncharacterized protein
          Length = 134

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 55/59 (93%)

Query: 28 CGYSKVLDIISNKWSALVIYTMEDGKIRYGEMLRRVEGISKKMLTQTVRKLERDGVVQR 86
          CGYS+VL+IISNKW+ALVIY +E+G IRYGEM RR+EGISKKMLTQTVRKLE +G+VQR
Sbjct: 17 CGYSRVLEIISNKWTALVIYALENGSIRYGEMERRIEGISKKMLTQTVRKLEWNGLVQR 75


>B1DA30.1 B1DA30_9BACL Transcriptional regulator, HxlR family
          Length = 120

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 48/59 (81%)

Query: 28 CGYSKVLDIISNKWSALVIYTMEDGKIRYGEMLRRVEGISKKMLTQTVRKLERDGVVQR 86
          C Y + L+I+S+KW+ LV Y +E GK RY ++ RRVEG+++KMLTQT+R+LERDG+V R
Sbjct: 11 CHYRRALEIVSSKWTVLVFYELESGKRRYSDLKRRVEGVTQKMLTQTLRQLERDGLVVR 69


>C0TKL4.1 C0TKL4_9PSEU Predicted transcriptional regulator
          Length = 121

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 50/69 (72%)

Query: 28 CGYSKVLDIISNKWSALVIYTMEDGKIRYGEMLRRVEGISKKMLTQTVRKLERDGVVQRX 87
          C    +LD+++NKWSAL I  +EDG +R+GE+ RR+EG+S K+LTQT+R+LE  G+V R 
Sbjct: 20 CPCRSMLDLLANKWSALAIGALEDGVLRFGELQRRLEGVSPKVLTQTLRRLEDHGLVHRE 79

Query: 88 XXXXLLLYL 96
              + L++
Sbjct: 80 VVPAVPLHV 88


>C4RMZ5.1 C4RMZ5_9ACTO HxlR family transcriptional regulator
          Length = 123

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 45/59 (76%)

Query: 28 CGYSKVLDIISNKWSALVIYTMEDGKIRYGEMLRRVEGISKKMLTQTVRKLERDGVVQR 86
          CG  +VLD I ++WS LV+ T+  G+ R+ E+ R +EG+S+KMLTQT+R LERDG++ R
Sbjct: 15 CGSRQVLDRIGDRWSVLVVLTLAAGEKRFSELARHIEGVSQKMLTQTLRGLERDGLITR 73


>C0VAQ0.1 C0VAQ0_9MICO Predicted transcriptional regulator
          Length = 121

 Score = 70.5 bits (171), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 44/59 (74%)

Query: 28 CGYSKVLDIISNKWSALVIYTMEDGKIRYGEMLRRVEGISKKMLTQTVRKLERDGVVQR 86
          C   ++LD I ++W+ L +  + DG +R+ E+ RRVEG+S KMLTQT+R LERDG+V+R
Sbjct: 11 CPSRRILDRIGDRWTVLTVGALGDGNVRFSELRRRVEGVSHKMLTQTLRALERDGLVRR 69


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.325    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 381,316,948
Number of extensions: 14817069
Number of successful extensions: 43576
Number of sequences better than 1.0e-05: 576
Number of HSP's gapped: 44006
Number of HSP's successfully gapped: 576
Length of query: 96
Length of database: 3,060,696,203
Length adjustment: 65
Effective length of query: 31
Effective length of database: 2,448,330,228
Effective search space: 75898237068
Effective search space used: 75898237068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)