BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0039.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZG65.1 C0ZG65_BREBN Putative N-acyl homoserine lactonase 478 e-133 C5DAI9.1 C5DAI9_9BACI Beta-lactamase domain protein 463 e-129 C3J5W4.1 C3J5W4_9BACI Beta-lactamase domain protein 451 e-125 B7Y6C9.1 B7Y6C9_9BACI Beta-lactamase domain protein 451 e-125 B1HR89.1 B1HR89_LYSSC Putative uncharacterized protein 425 e-117 >C0ZG65.1 C0ZG65_BREBN Putative N-acyl homoserine lactonase Length = 284 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 222/254 (87%), Positives = 235/254 (92%) Query: 1 MHNPATINNPNAQTQFVEFPIYTVLIDHPEGKILFDTACNPNSMGAQGRWAQSTQLSSPW 60 MHNPATI NPNA TQFVEFPIYTVLIDHPEGKILFDTACNPNSMG +GRWA STQL+SPW Sbjct: 31 MHNPATIKNPNAATQFVEFPIYTVLIDHPEGKILFDTACNPNSMGIEGRWAASTQLASPW 90 Query: 61 VASEECYLHNRLEQLKIRPEEIKYVVASHLHLDHAGCLELFTNATIIVHEDEFNGALQTY 120 VASEECYLHNRLEQ+ +RPEEIKYVVASHLHLDHAGCLE+FTNATIIVHEDE NG LQ+Y Sbjct: 91 VASEECYLHNRLEQIHVRPEEIKYVVASHLHLDHAGCLEMFTNATIIVHEDELNGTLQSY 150 Query: 121 ARNEKEGAYVWADIDAWIKNQLQWKTIKPGEDNLDLVDGIKILNFGSGHAWGMLGLQIEM 180 ARNEKEGAYVWADIDAWIKN LQW+T+K EDNL+L +GIKI+NFGSGHAWGMLGL IEM Sbjct: 151 ARNEKEGAYVWADIDAWIKNHLQWRTVKRHEDNLELAEGIKIMNFGSGHAWGMLGLHIEM 210 Query: 181 PETGGIILASDAIYTAESFGPPVKPPGIIYDLIGYRNAVEKIRTLAARTNSQVWFGHDTD 240 PETGGIILASDAIYTAES+GPPVK PGIIYD IGYRN VEKIRTLA RTNSQVWFGHD + Sbjct: 211 PETGGIILASDAIYTAESYGPPVKLPGIIYDSIGYRNTVEKIRTLAVRTNSQVWFGHDAN 270 Query: 241 QFKTLRKSTEGYYE 254 QFK RKSTEGYYE Sbjct: 271 QFKQFRKSTEGYYE 284 >C5DAI9.1 C5DAI9_9BACI Beta-lactamase domain protein Length = 282 Score = 463 bits (1192), Expect = e-129, Method: Compositional matrix adjust. Identities = 211/254 (83%), Positives = 234/254 (92%) Query: 1 MHNPATINNPNAQTQFVEFPIYTVLIDHPEGKILFDTACNPNSMGAQGRWAQSTQLSSPW 60 MHNPATI+NPNAQT+FVEFPIYTVLIDHPEGKILFDTACNPNSMG QGRWA++TQ PW Sbjct: 29 MHNPATIHNPNAQTEFVEFPIYTVLIDHPEGKILFDTACNPNSMGPQGRWAEATQQMFPW 88 Query: 61 VASEECYLHNRLEQLKIRPEEIKYVVASHLHLDHAGCLELFTNATIIVHEDEFNGALQTY 120 ASEECYLHNRLEQLK+RPE+IKYVVASHLHLDHAGCLE+FTNATIIVHEDEFNGALQ Y Sbjct: 89 TASEECYLHNRLEQLKVRPEDIKYVVASHLHLDHAGCLEMFTNATIIVHEDEFNGALQCY 148 Query: 121 ARNEKEGAYVWADIDAWIKNQLQWKTIKPGEDNLDLVDGIKILNFGSGHAWGMLGLQIEM 180 ARN+KEGAY+WADIDAWIKN LQW+T+K EDN+ L +G+KILNFGSGHAWGMLGL +E+ Sbjct: 149 ARNQKEGAYIWADIDAWIKNNLQWRTVKRHEDNIILAEGVKILNFGSGHAWGMLGLHVEL 208 Query: 181 PETGGIILASDAIYTAESFGPPVKPPGIIYDLIGYRNAVEKIRTLAARTNSQVWFGHDTD 240 PETGGIILASDAIYTAES+GPP+KPPGIIYD +GY N VE+IR +A TNSQVWFGHD++ Sbjct: 209 PETGGIILASDAIYTAESYGPPIKPPGIIYDSLGYMNTVERIRRIARETNSQVWFGHDSE 268 Query: 241 QFKTLRKSTEGYYE 254 QFK RKSTEGYYE Sbjct: 269 QFKKFRKSTEGYYE 282 >C3J5W4.1 C3J5W4_9BACI Beta-lactamase domain protein Length = 283 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 205/254 (80%), Positives = 230/254 (90%) Query: 1 MHNPATINNPNAQTQFVEFPIYTVLIDHPEGKILFDTACNPNSMGAQGRWAQSTQLSSPW 60 MHNPATI NPNAQT+FVEFPIYTVLIDHPEGKILFDTACNPNSMG QGRWA+ TQ PW Sbjct: 30 MHNPATIYNPNAQTEFVEFPIYTVLIDHPEGKILFDTACNPNSMGPQGRWAEVTQQMFPW 89 Query: 61 VASEECYLHNRLEQLKIRPEEIKYVVASHLHLDHAGCLELFTNATIIVHEDEFNGALQTY 120 ASEECYLHNRLEQLK+RPE+I+YVVASHLHLDHAGCLE+FTNATIIVHEDEFNGALQ Y Sbjct: 90 NASEECYLHNRLEQLKVRPEDIRYVVASHLHLDHAGCLEMFTNATIIVHEDEFNGALQCY 149 Query: 121 ARNEKEGAYVWADIDAWIKNQLQWKTIKPGEDNLDLVDGIKILNFGSGHAWGMLGLQIEM 180 ARN+KEGAY+WADIDAWIKN LQW+T+K EDN+ L +G+++LNFGSGHAWGMLGL +E+ Sbjct: 150 ARNQKEGAYIWADIDAWIKNNLQWRTVKRHEDNILLAEGVRVLNFGSGHAWGMLGLHVEL 209 Query: 181 PETGGIILASDAIYTAESFGPPVKPPGIIYDLIGYRNAVEKIRTLAARTNSQVWFGHDTD 240 PETG IILASDAIYTAE++GPPVKPPGIIYD +GY N VE+IR +A TNS++WFGHD + Sbjct: 210 PETGKIILASDAIYTAENYGPPVKPPGIIYDSLGYVNTVERIRRIAQETNSKIWFGHDAE 269 Query: 241 QFKTLRKSTEGYYE 254 QFK RKSTEGYYE Sbjct: 270 QFKQFRKSTEGYYE 283 >B7Y6C9.1 B7Y6C9_9BACI Beta-lactamase domain protein Length = 283 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 205/254 (80%), Positives = 230/254 (90%) Query: 1 MHNPATINNPNAQTQFVEFPIYTVLIDHPEGKILFDTACNPNSMGAQGRWAQSTQLSSPW 60 MHNPATI NPNAQT+FVEFPIYTVLIDHPEGKILFDTACNPNSMG QGRWA+ TQ PW Sbjct: 30 MHNPATIYNPNAQTEFVEFPIYTVLIDHPEGKILFDTACNPNSMGPQGRWAEVTQQMFPW 89 Query: 61 VASEECYLHNRLEQLKIRPEEIKYVVASHLHLDHAGCLELFTNATIIVHEDEFNGALQTY 120 ASEECYLHNRLEQLK+RPE+I+YVVASHLHLDHAGCLE+FTNATIIVHEDEFNGALQ Y Sbjct: 90 NASEECYLHNRLEQLKVRPEDIRYVVASHLHLDHAGCLEMFTNATIIVHEDEFNGALQCY 149 Query: 121 ARNEKEGAYVWADIDAWIKNQLQWKTIKPGEDNLDLVDGIKILNFGSGHAWGMLGLQIEM 180 ARN+KEGAY+WADIDAWIKN LQW+T+K EDN+ L +G+++LNFGSGHAWGMLGL +E+ Sbjct: 150 ARNQKEGAYIWADIDAWIKNNLQWRTVKRHEDNILLAEGVRVLNFGSGHAWGMLGLHVEL 209 Query: 181 PETGGIILASDAIYTAESFGPPVKPPGIIYDLIGYRNAVEKIRTLAARTNSQVWFGHDTD 240 PETG IILASDAIYTAE++GPPVKPPGIIYD +GY N VE+IR +A TNS++WFGHD + Sbjct: 210 PETGKIILASDAIYTAENYGPPVKPPGIIYDSLGYVNTVERIRRIAQETNSKIWFGHDAE 269 Query: 241 QFKTLRKSTEGYYE 254 QFK RKSTEGYYE Sbjct: 270 QFKQFRKSTEGYYE 283 >B1HR89.1 B1HR89_LYSSC Putative uncharacterized protein Length = 286 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 195/254 (76%), Positives = 220/254 (86%) Query: 1 MHNPATINNPNAQTQFVEFPIYTVLIDHPEGKILFDTACNPNSMGAQGRWAQSTQLSSPW 60 MHNPATI++PN +FVEFP+YTVLIDHPEGKILFDTACNPN+MG GRW + TQ + P Sbjct: 33 MHNPATIDHPNQPNEFVEFPVYTVLIDHPEGKILFDTACNPNAMGPDGRWGEFTQKAFPI 92 Query: 61 VASEECYLHNRLEQLKIRPEEIKYVVASHLHLDHAGCLELFTNATIIVHEDEFNGALQTY 120 EECYLH+RLE+L +RPE+IK+VVASHLHLDHAGCLELFTNATIIV EDEFNG LQTY Sbjct: 93 NMPEECYLHHRLEELNVRPEDIKFVVASHLHLDHAGCLELFTNATIIVQEDEFNGTLQTY 152 Query: 121 ARNEKEGAYVWADIDAWIKNQLQWKTIKPGEDNLDLVDGIKILNFGSGHAWGMLGLQIEM 180 ARN K+GAY+W DID WIKN LQW+ IK GEDN+ L +GI++LNFGSGHAWGMLGL I+M Sbjct: 153 ARNVKDGAYIWGDIDMWIKNNLQWRLIKRGEDNVKLAEGIQVLNFGSGHAWGMLGLHIQM 212 Query: 181 PETGGIILASDAIYTAESFGPPVKPPGIIYDLIGYRNAVEKIRTLAARTNSQVWFGHDTD 240 PE+GGIILASDAIYTAESFGPPVKPPGIIYD +GY + VE+IR LA TNSQVWFGHD Sbjct: 213 PESGGIILASDAIYTAESFGPPVKPPGIIYDSVGYNSTVERIRRLANETNSQVWFGHDPV 272 Query: 241 QFKTLRKSTEGYYE 254 QFK+ RKSTEGYYE Sbjct: 273 QFKSFRKSTEGYYE 286 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,676,213,479 Number of extensions: 71366908 Number of successful extensions: 155293 Number of sequences better than 1.0e-05: 297 Number of HSP's gapped: 154867 Number of HSP's successfully gapped: 297 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)