BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0033.p (223 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9DWR7.1 B9DWR7_CLOK1 Putative uncharacterized protein 343 4e-93 A5N318.1 A5N318_CLOK5 Predicted transcriptional regulator 343 4e-93 A8RIC8.1 A8RIC8_9CLOT Putative uncharacterized protein 193 1e-47 C5EIA2.1 C5EIA2_9FIRM Putative uncharacterized protein 172 2e-41 Q185V7.1 Q185V7_CLOD6 Putative cNMP-binding regulatory protein 158 3e-37 >B9DWR7.1 B9DWR7_CLOK1 Putative uncharacterized protein Length = 218 Score = 343 bits (881), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 165/218 (75%), Positives = 189/218 (86%) Query: 1 MNNLDSLCQSRLFSGISPNDIPQMLKCLSATRKEYAKDEMVVREGDLVDDVGIILQGSAQ 60 M++LD L QS LFSGI PNDI +ML CLSA RKEY K EMVV EGD V+D+GIIL+GSA+ Sbjct: 1 MDDLDILVQSHLFSGIEPNDIEKMLICLSAMRKEYEKGEMVVCEGDSVNDIGIILKGSAR 60 Query: 61 STKLSVKGKQIIVSLHYPGGYTAVLTAASRGRRCPMSVQAIEPLEILFIPIKSILSRCTK 120 STKLS+ GKQIIVSLHYPGGYTA+LTAAS R+CPMSVQA+E L +LFIP++++LSRC K Sbjct: 61 STKLSITGKQIIVSLHYPGGYTAILTAASGKRKCPMSVQALESLAVLFIPVRNVLSRCKK 120 Query: 121 LCMAHEQLLGNLFDSIAERALELHDRNDCLIMPTIRDKVLTYLTRVMRETGTETFTIPFD 180 LC+AHEQLL N FDSIAERALELHDRNDCLIMPTIRDKVLTYLT+V E+ IPF+ Sbjct: 121 LCIAHEQLLLNFFDSIAERALELHDRNDCLIMPTIRDKVLTYLTKVCHESKARIVRIPFN 180 Query: 181 REAMAEYLDVDRSALSRELAWMKRDGLIDFYRNEFKLL 218 REAMA YL+VDRSALSRELA MKRDGLIDFY+N+F+LL Sbjct: 181 REAMAGYLNVDRSALSRELAQMKRDGLIDFYKNKFELL 218 >A5N318.1 A5N318_CLOK5 Predicted transcriptional regulator Length = 218 Score = 343 bits (881), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 165/218 (75%), Positives = 189/218 (86%) Query: 1 MNNLDSLCQSRLFSGISPNDIPQMLKCLSATRKEYAKDEMVVREGDLVDDVGIILQGSAQ 60 M++LD L QS LFSGI PNDI +ML CLSA RKEY K EMVV EGD V+D+GIIL+GSA+ Sbjct: 1 MDDLDILVQSHLFSGIEPNDIEKMLICLSAMRKEYEKGEMVVCEGDSVNDIGIILKGSAR 60 Query: 61 STKLSVKGKQIIVSLHYPGGYTAVLTAASRGRRCPMSVQAIEPLEILFIPIKSILSRCTK 120 STKLS+ GKQIIVSLHYPGGYTA+LTAAS R+CPMSVQA+E L +LFIP++++LSRC K Sbjct: 61 STKLSITGKQIIVSLHYPGGYTAILTAASGKRKCPMSVQALESLAVLFIPVRNVLSRCKK 120 Query: 121 LCMAHEQLLGNLFDSIAERALELHDRNDCLIMPTIRDKVLTYLTRVMRETGTETFTIPFD 180 LC+AHEQLL N FDSIAERALELHDRNDCLIMPTIRDKVLTYLT+V E+ IPF+ Sbjct: 121 LCIAHEQLLLNFFDSIAERALELHDRNDCLIMPTIRDKVLTYLTKVCHESKARIVRIPFN 180 Query: 181 REAMAEYLDVDRSALSRELAWMKRDGLIDFYRNEFKLL 218 REAMA YL+VDRSALSRELA MKRDGLIDFY+N+F+LL Sbjct: 181 REAMAGYLNVDRSALSRELAQMKRDGLIDFYKNKFELL 218 >A8RIC8.1 A8RIC8_9CLOT Putative uncharacterized protein Length = 241 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 97/217 (44%), Positives = 135/217 (62%) Query: 3 NLDSLCQSRLFSGISPNDIPQMLKCLSATRKEYAKDEMVVREGDLVDDVGIILQGSAQST 62 N+ + Q++LFSG+S D+ ++L CL A YA + +VV EG V GI+L G +S Sbjct: 25 NIQDIMQAKLFSGLSQKDVCRLLACLKAQSVNYAGETVVVEEGCPVKKFGILLAGRGKSY 84 Query: 63 KLSVKGKQIIVSLHYPGGYTAVLTAASRGRRCPMSVQAIEPLEILFIPIKSILSRCTKLC 122 K +G + V+L G V+ AAS GR+ P+SV + +LFI +++ CT+ C Sbjct: 85 KTDSQGHTLTVTLLKEGSEIGVILAASPGRKSPVSVTVEQGSSVLFISYNRLINNCTRNC 144 Query: 123 MAHEQLLGNLFDSIAERALELHDRNDCLIMPTIRDKVLTYLTRVMRETGTETFTIPFDRE 182 H QLL N +AE+ L LH+R DCL+ PT RDK+LTYL FTIP DR Sbjct: 145 PCHRQLLKNFMWIVAEKGLVLHERLDCLLRPTARDKILTYLKNFSGLENGLPFTIPLDRN 204 Query: 183 AMAEYLDVDRSALSRELAWMKRDGLIDFYRNEFKLLQ 219 AMAEYL++DRSALSREL+ MK+DG+ID+Y++ F+L Sbjct: 205 AMAEYLNMDRSALSRELSGMKKDGIIDYYKSTFRLFH 241 >C5EIA2.1 C5EIA2_9FIRM Putative uncharacterized protein Length = 245 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 128/209 (61%) Query: 10 SRLFSGISPNDIPQMLKCLSATRKEYAKDEMVVREGDLVDDVGIILQGSAQSTKLSVKGK 69 +RLF+ IS D ++L CL+A EYA D +++ EG V GI+L G +S K + G Sbjct: 36 TRLFADISREDTGRLLSCLNAHPVEYAHDTVIIEEGSQVRAFGILLSGRGRSYKTDLDGN 95 Query: 70 QIIVSLHYPGGYTAVLTAASRGRRCPMSVQAIEPLEILFIPIKSILSRCTKLCMAHEQLL 129 + V+L G V+ AAS P+S +LFI S+++ C + C H++L+ Sbjct: 96 VLTVTLLNTGSEIGVILAASPDHPSPVSAAVERGSAVLFISYDSLMNSCARNCACHKRLI 155 Query: 130 GNLFDSIAERALELHDRNDCLIMPTIRDKVLTYLTRVMRETGTETFTIPFDREAMAEYLD 189 N S+A++ L LH+R DCL+ P RDK++ YL + TFT+P DR AMA+YL+ Sbjct: 156 RNFTASVAQKGLVLHERLDCLLRPCARDKIMAYLKNASCPSAGGTFTVPLDRNAMAQYLN 215 Query: 190 VDRSALSRELAWMKRDGLIDFYRNEFKLL 218 +DRSALSREL+ MK DG++DF+++ F+LL Sbjct: 216 MDRSALSRELSKMKADGIMDFHKSTFRLL 244 >Q185V7.1 Q185V7_CLOD6 Putative cNMP-binding regulatory protein Length = 242 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 130/216 (60%) Query: 3 NLDSLCQSRLFSGISPNDIPQMLKCLSATRKEYAKDEMVVREGDLVDDVGIILQGSAQST 62 ++D L + LF GI +++ +ML+CL K Y KD ++ G V +GI+L+GSA Sbjct: 23 HIDLLKKIPLFEGIKSDELEEMLECLGVVDKTYPKDSIIFSVGSEVTSIGIMLKGSAHII 82 Query: 63 KLSVKGKQIIVSLHYPGGYTAVLTAASRGRRCPMSVQAIEPLEILFIPIKSILSRCTKLC 122 K ++G + IV+ PG + A +R + ++V E+LFI KS+ C+ C Sbjct: 83 KEDIEGNRNIVAELLPGDLFGEVFACTRLHKSNVTVTTTSSCEVLFIKFKSVTGICSSTC 142 Query: 123 MAHEQLLGNLFDSIAERALELHDRNDCLIMPTIRDKVLTYLTRVMRETGTETFTIPFDRE 182 + H +L+ N+ IAE+ + LH++ + L T R+K+L Y ++ + +TG+ FTIPF R Sbjct: 143 VFHNRLVENMLQLIAEKNILLHNKIELLSRKTTREKLLMYFSKQIEQTGSHQFTIPFSRN 202 Query: 183 AMAEYLDVDRSALSRELAWMKRDGLIDFYRNEFKLL 218 MA++L VDRS++SREL M+ +GL+ F +N+F++ Sbjct: 203 EMADFLCVDRSSMSRELGKMRDEGLLSFNKNKFEIF 238 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,203,459,926 Number of extensions: 43830020 Number of successful extensions: 125686 Number of sequences better than 1.0e-05: 262 Number of HSP's gapped: 125897 Number of HSP's successfully gapped: 262 Length of query: 223 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 92 Effective length of database: 1,826,543,238 Effective search space: 168041977896 Effective search space used: 168041977896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)