BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0030.p
         (142 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2CZF5.1 C2CZF5_LACBR Outer membrane protein                          123   6e-27
A9BJ32.1 A9BJ32_PETMO Putative outer membrane protein                 122   1e-26
C1RF22.1 C1RF22_9CELL Putative uncharacterized protein                121   2e-26
B1D5Y9.1 B1D5Y9_9BACL Coagulation factor 5/8 type domain protein      120   4e-26
A2ICH1.1 A2ICH1_THESJ Xylosidase                                      116   5e-25

>C2CZF5.1 C2CZF5_LACBR Outer membrane protein
          Length = 639

 Score =  123 bits (308), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 74/115 (64%), Gaps = 1/115 (0%)

Query: 16  YHVAIQGSDQAPGTEAQPFRTISRAAAIAEPGDNITVHAGVYREWVNPANGGTKE-QRIV 74
           YHVA  G+D   GTE QPF TI+ AA IA PGD + VH GVYREWV+P N G  + QRI 
Sbjct: 4   YHVAKNGTDDNVGTENQPFLTINHAAQIALPGDTVMVHQGVYREWVDPKNAGLNDRQRIT 63

Query: 75  YQSAGDGEVVITGAEPVADWKDEGDGVWRTEVPNSLFVIRNPYQTKLHGDWLFEG 129
           YQ+     VV+ G+E V DW+    G+W+T V N LF   NP+  KL GDWL +G
Sbjct: 64  YQAVAGDHVVLKGSEVVKDWQPVTKGIWKTVVDNKLFGDYNPFAVKLDGDWLEQG 118


>A9BJ32.1 A9BJ32_PETMO Putative outer membrane protein
          Length = 638

 Score =  122 bits (306), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 82/124 (66%), Gaps = 1/124 (0%)

Query: 14  VEYHVAIQGSDQAPGTEAQPFRTISRAAAIAEPGDNITVHAGVYREWVNPANGG-TKEQR 72
           +EYHVA  G D+A GT+  PF TI++AA++A  GD + VH GVYREWV P N G + ++R
Sbjct: 1   MEYHVAKTGFDRALGTKQDPFLTINKAASVAMAGDKVIVHEGVYREWVKPKNKGLSNKRR 60

Query: 73  IVYQSAGDGEVVITGAEPVADWKDEGDGVWRTEVPNSLFVIRNPYQTKLHGDWLFEGAFE 132
           I YQ+A   +V+I G+E + DW+     +W+ E+PNS F   NPY+ ++ GDWL     +
Sbjct: 61  ITYQAAEGEKVIIKGSERIQDWQKVEGNIWKCELPNSFFGEFNPYKEEIFGDWLVTTDQK 120

Query: 133 PHLG 136
            HLG
Sbjct: 121 RHLG 124


>C1RF22.1 C1RF22_9CELL Putative uncharacterized protein
          Length = 653

 Score =  121 bits (304), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/124 (53%), Positives = 80/124 (64%), Gaps = 4/124 (3%)

Query: 17  HVAIQGSDQAPGTEAQPFRTISRAAAIAEPGDNITVHAGVYREWVNPANGGTKE-QRIVY 75
           HV++ GSD A GT+  P RTI RAA +A PGD +TVHAG YREWV P   G  E +RI Y
Sbjct: 6   HVSVHGSDDAVGTQDAPLRTIDRAARLARPGDTVTVHAGTYREWVRPRRSGRGENRRITY 65

Query: 76  QSAGDGEVVITGAEPVADWKDEGDGVWRTEVPNSLFVIRNPYQTKLHGDWLFE-GAFEP- 133
           Q+A    V ITG+E V  W+  G GVWR EVPN+LF   NP+  ++ GDW+   G  EP 
Sbjct: 66  QAAPGEHVRITGSEQVTGWESLGGGVWRVEVPNALFGEFNPFAVEVDGDWIVRPGRDEPK 125

Query: 134 -HLG 136
            HLG
Sbjct: 126 KHLG 129


>B1D5Y9.1 B1D5Y9_9BACL Coagulation factor 5/8 type domain protein
          Length = 2533

 Score =  120 bits (301), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 1/105 (0%)

Query: 17  HVAIQGSDQAPGTEAQPFRTISRAAAIAEPGDNITVHAGVYREWVNPANGGTKE-QRIVY 75
           HVA  GSD  PGTEA+PF TI+ AA +A+PGD + VHAG+YRE V PA GGT E  RI Y
Sbjct: 47  HVAKNGSDSNPGTEAEPFLTINHAAELAQPGDTVLVHAGLYRETVKPARGGTDEAHRITY 106

Query: 76  QSAGDGEVVITGAEPVADWKDEGDGVWRTEVPNSLFVIRNPYQTK 120
            +AGDGEVVI G+E +  W      VWR  +PNS F   NPY T+
Sbjct: 107 TNAGDGEVVIKGSEEIDSWTPYSGDVWRVTLPNSYFGSYNPYSTR 151


>A2ICH1.1 A2ICH1_THESJ Xylosidase
          Length = 638

 Score =  116 bits (291), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 79/124 (63%), Gaps = 1/124 (0%)

Query: 14  VEYHVAIQGSDQAPGTEAQPFRTISRAAAIAEPGDNITVHAGVYREWVNPA-NGGTKEQR 72
           +EYHVA  GSD+  GT   PF TI++AA++A  GD I VH GVYREWV P   G + ++R
Sbjct: 1   MEYHVAKTGSDEGKGTLKDPFLTINKAASVAMAGDTIIVHEGVYREWVKPKYKGLSDKRR 60

Query: 73  IVYQSAGDGEVVITGAEPVADWKDEGDGVWRTEVPNSLFVIRNPYQTKLHGDWLFEGAFE 132
           I Y++A   +VVI G+E +  W+     VWR ++PNS F   NPY+ ++ GDWL     +
Sbjct: 61  ITYKAAEGEKVVIKGSERIQSWQRVEGNVWRCQLPNSFFGEFNPYKEEVFGDWLLTVNEK 120

Query: 133 PHLG 136
            HLG
Sbjct: 121 KHLG 124


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 983,716,268
Number of extensions: 42601586
Number of successful extensions: 60072
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 60080
Number of HSP's successfully gapped: 64
Length of query: 142
Length of database: 3,060,696,203
Length adjustment: 105
Effective length of query: 37
Effective length of database: 2,071,489,628
Effective search space: 76645116236
Effective search space used: 76645116236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)