BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0025.p (216 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DE38.1 B1DE38_9BACL Two component transcriptional regulator, w... 277 4e-73 C2X6B2.1 C2X6B2_BACCE Two-component response regulator 248 3e-64 C2WH11.1 C2WH11_BACCE Two-component response regulator 248 3e-64 B5UX08.1 B5UX08_BACCE DNA-binding response regulator 248 3e-64 B7H4R0.1 B7H4R0_BACC4 DNA-binding response regulator 248 4e-64 >B1DE38.1 B1DE38_9BACL Two component transcriptional regulator, winged helix family Length = 228 Score = 277 bits (709), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 137/210 (65%), Positives = 167/210 (79%), Gaps = 1/210 (0%) Query: 1 MNTVLVVDDDSEIRDIIHVYLRNEGYHVIEAADGEEALKVIESTPVQLVILDVMMPRMDG 60 M +LVVDDD+EIRD+IHVYLRNEG+ V+EA DG EA+ ++ V LVILDVMMPRMDG Sbjct: 1 MGVILVVDDDTEIRDVIHVYLRNEGHSVLEAGDGSEAIDLLVQQEVDLVILDVMMPRMDG 60 Query: 61 IKTCLKIREVSDTPLIMLSAKEEDIDKITGLTTGADDYMTKPFNPLELLARVKAQFRRQA 120 IK C+ IRE P+IMLSAKE DIDKI GL+ GADDY+TKPFNP+EL+ARVKAQ RRQ Sbjct: 61 IKACMHIREQYSVPIIMLSAKEGDIDKIMGLSIGADDYVTKPFNPMELIARVKAQLRRQK 120 Query: 121 LI-GKADFNSLLLIKDLVIDKSKHSVKVKGIDIPVTPLEFAILVLLASHPGQVFSSEHIY 179 ++ K + + I +LVID +KH V ++G + +TPLEFAIL LLA++PGQVFS++ IY Sbjct: 121 MLTSKEGVHDQITIDELVIDVAKHFVSIRGQVVMLTPLEFAILKLLAANPGQVFSADTIY 180 Query: 180 ESVWKEPFGNSDNTVMVHIRNLREKLDDDP 209 ESVWKE G SDNTVMVHIRNLREKL+ +P Sbjct: 181 ESVWKERIGFSDNTVMVHIRNLREKLEINP 210 >C2X6B2.1 C2X6B2_BACCE Two-component response regulator Length = 233 Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 120/209 (57%), Positives = 161/209 (77%), Gaps = 2/209 (0%) Query: 3 TVLVVDDDSEIRDIIHVYLRNEGYHVIEAADGEEALKVIESTPVQLVILDVMMPRMDGIK 62 T+LVVDD+ EIR++I +YL+NEGY V++A DGEE L+++E V LV+LD+MMP++DGI Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 63 TCLKIREVSDTPLIMLSAKEEDIDKITGLTTGADDYMTKPFNPLELLARVKAQFRR-QAL 121 C+K+RE + P+IMLSAK +D+DKI GLTTGADDY+TKPFNPLEL+AR+K+Q RR + Sbjct: 65 MCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 122 IGKADFNS-LLLIKDLVIDKSKHSVKVKGIDIPVTPLEFAILVLLASHPGQVFSSEHIYE 180 G A N L I ++ I+ S H V V+G ++ +TP EF+IL LLA +PG VFS+E IYE Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 181 SVWKEPFGNSDNTVMVHIRNLREKLDDDP 209 VW E SDNTVMVHIR +REK++++P Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENP 213 >C2WH11.1 C2WH11_BACCE Two-component response regulator Length = 233 Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 120/209 (57%), Positives = 161/209 (77%), Gaps = 2/209 (0%) Query: 3 TVLVVDDDSEIRDIIHVYLRNEGYHVIEAADGEEALKVIESTPVQLVILDVMMPRMDGIK 62 T+LVVDD+ EIR++I +YL+NEGY V++A DGEE L+++E V LV+LD+MMP++DGI Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 63 TCLKIREVSDTPLIMLSAKEEDIDKITGLTTGADDYMTKPFNPLELLARVKAQFRR-QAL 121 C+K+RE + P+IMLSAK +D+DKI GLTTGADDY+TKPFNPLEL+AR+K+Q RR + Sbjct: 65 MCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 122 IGKADFNS-LLLIKDLVIDKSKHSVKVKGIDIPVTPLEFAILVLLASHPGQVFSSEHIYE 180 G A N L I ++ I+ S H V V+G ++ +TP EF+IL LLA +PG VFS+E IYE Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 181 SVWKEPFGNSDNTVMVHIRNLREKLDDDP 209 VW E SDNTVMVHIR +REK++++P Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENP 213 >B5UX08.1 B5UX08_BACCE DNA-binding response regulator Length = 233 Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 120/209 (57%), Positives = 161/209 (77%), Gaps = 2/209 (0%) Query: 3 TVLVVDDDSEIRDIIHVYLRNEGYHVIEAADGEEALKVIESTPVQLVILDVMMPRMDGIK 62 T+LVVDD+ EIR++I +YL+NEGY V++A DGEE L+++E V LV+LD+MMP++DGI Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 63 TCLKIREVSDTPLIMLSAKEEDIDKITGLTTGADDYMTKPFNPLELLARVKAQFRR-QAL 121 C+K+RE + P+IMLSAK +D+DKI GLTTGADDY+TKPFNPLEL+AR+K+Q RR + Sbjct: 65 MCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 122 IGKADFNS-LLLIKDLVIDKSKHSVKVKGIDIPVTPLEFAILVLLASHPGQVFSSEHIYE 180 G A N L I ++ I+ S H V V+G ++ +TP EF+IL LLA +PG VFS+E IYE Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 181 SVWKEPFGNSDNTVMVHIRNLREKLDDDP 209 VW E SDNTVMVHIR +REK++++P Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENP 213 >B7H4R0.1 B7H4R0_BACC4 DNA-binding response regulator Length = 233 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 120/209 (57%), Positives = 161/209 (77%), Gaps = 2/209 (0%) Query: 3 TVLVVDDDSEIRDIIHVYLRNEGYHVIEAADGEEALKVIESTPVQLVILDVMMPRMDGIK 62 T+LVVDD+ EIR++I +YL+NEGY V++A DGEE L+++E V LV+LD+MMP++DGI Sbjct: 5 TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIH 64 Query: 63 TCLKIREVSDTPLIMLSAKEEDIDKITGLTTGADDYMTKPFNPLELLARVKAQFRR-QAL 121 C+K+RE + P+IMLSAK +D+DKI GLTTGADDY+TKPFNPLEL+AR+K+Q RR + Sbjct: 65 MCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 122 IGKADFNS-LLLIKDLVIDKSKHSVKVKGIDIPVTPLEFAILVLLASHPGQVFSSEHIYE 180 G A N L I ++ I+ S H V V+G ++ +TP EF+IL LLA +PG VFS+E IYE Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 181 SVWKEPFGNSDNTVMVHIRNLREKLDDDP 209 VW E SDNTVMVHIR +REK++++P Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENP 213 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,226,333,529 Number of extensions: 46996625 Number of successful extensions: 222772 Number of sequences better than 1.0e-05: 32091 Number of HSP's gapped: 196098 Number of HSP's successfully gapped: 32321 Length of query: 216 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 86 Effective length of database: 1,835,964,253 Effective search space: 157892925758 Effective search space used: 157892925758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)