BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0024.p (377 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DE37.1 B1DE37_9BACL Sensor protein EC=2.7.13.3 274 1e-71 C3HR23.1 C3HR23_BACTU Putative uncharacterized protein 218 1e-54 Q6HBG7.1 Q6HBG7_BACHK Sensor protein EC=2.7.13.3 218 1e-54 C2UQ03.1 C2UQ03_BACCE Putative uncharacterized protein 214 1e-53 B9J4J6.1 B9J4J6_BACCQ Sensor protein EC=2.7.13.3 214 1e-53 >B1DE37.1 B1DE37_9BACL Sensor protein EC=2.7.13.3 Length = 344 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 136/298 (45%), Positives = 195/298 (65%) Query: 66 FLLVFTITFFGLTRRIVKDLMTLERGLQMITEGDLNHRVPVHRQDELGRVAYNINQMTER 125 F+++F +TF+ LT+R++ L GL +I++G+ +RVPV R+DELG +A N+N+M E+ Sbjct: 46 FIMIFLLTFYLLTKRMINYFSVLSEGLGLISQGNFEYRVPVRREDELGMLARNMNKMAEQ 105 Query: 126 LQLQIAKERENERSKMELITGISHDLRTPLTSIIGYIELLRTKSFQDQEEYTRFVQNTYN 185 L Q KE+E E SKM LITG+SHDLRTPLTS+IGY++LLR +S+ D+ EY RFV N ++ Sbjct: 106 LSSQKRKEKETEESKMNLITGVSHDLRTPLTSMIGYLDLLRKRSYIDENEYDRFVNNAFS 165 Query: 186 KSIHLKKLLDDLFEYTRLNSIDTRQNVHRIDXXXXXXXXXXXXXPIAHDNAIHIIKDIGS 245 K+ LKKL+DDLF YTRL + D + D PIA +N + + + Sbjct: 166 KAQQLKKLIDDLFIYTRLTTGDMIFAKQQADMRELVEQVLFEFIPIAEENHVFVRPHLNI 225 Query: 246 SPVLIFVDSDKIARAIDNLLMNALKYSVKPGAIHVRMITDPKQAAIEVENRGIPLTREQQ 305 + +D +++AR +DNLLMNALKYS P I V +++D + V N G +T+EQ+ Sbjct: 226 HEAAVHIDPEQVARILDNLLMNALKYSKTPKDIDVYLMSDETSVYLTVANEGEQITKEQE 285 Query: 306 EKLFERFYKVDHSRSSEGIQTGAGLGLSIARNIAERHGGTLTLDHVNDVFTFRLTIPI 363 KLF+RFYK +H S+ IQ GAGLGL+IAR +AE G LTLD+ + + F L +P+ Sbjct: 286 GKLFDRFYKKEHVESNAHIQVGAGLGLAIARQLAEHQDGCLTLDYEDGHYAFTLKLPL 343 >C3HR23.1 C3HR23_BACTU Putative uncharacterized protein Length = 485 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 181/303 (59%), Gaps = 2/303 (0%) Query: 61 FITPFFLLVFTITFFGLTRRIVKDLMTLERGLQMITEGDLNHRVPVHRQDELGRVAYNIN 120 F T ++VF +FF +T++ +K++ + +G+ I +G+L +R+ QDE+ + NIN Sbjct: 182 FPTILGVIVFIFSFFYITKKKMKEIEVMVQGVNEIAKGNLAYRIEEKGQDEMALLTKNIN 241 Query: 121 QMTERLQLQIAKERENERSKMELITGISHDLRTPLTSIIGYIELLRTKSFQDQEEYTRFV 180 QM E L + I KERE ER K ELIT +SHDLRTPLTSI+GY+ LL+ ++++E+Y ++ Sbjct: 242 QMAEGLMVNIEKEREIERQKNELITNVSHDLRTPLTSIMGYLRLLQDAKYENREQYDEYI 301 Query: 181 QNTYNKSIHLKKLLDDLFEYTRLNSIDTRQNVHRIDXXXXXXXXXXXXXPIAHDNAIHII 240 + ++KS LK L++DLFEYT+L + + I P A ++ + I Sbjct: 302 KIAFSKSEQLKNLIEDLFEYTKLTNENIVLEKQEICINEMLDQLIEELVPQAEEHGLSIT 361 Query: 241 KDIGSSPVLIFVDSDKIARAIDNLLMNALKYSVKPGAIHVRMITDPKQAAIEVENRGIPL 300 K+ + VD +KI R DNLLMNA+KYS G I V + + I V+N Sbjct: 362 KEFPEERIHAVVDPEKIVRVFDNLLMNAIKYSKDEGEIKVSLQRQKETIQISVKNPSEEF 421 Query: 301 TREQQEKLFERFYKVDHSRSSEGIQTGAGLGLSIARNIAERHGGTLTLDHVNDVFTFRLT 360 T+++ E LFERFYK D SRS + G+GLGL+IA++I + GG + ++ + + F +T Sbjct: 422 TKKELEHLFERFYKKDQSRSR--VSEGSGLGLAIAKSIVDMQGGDIRAEYEDGLVQFIIT 479 Query: 361 IPI 363 +PI Sbjct: 480 LPI 482 >Q6HBG7.1 Q6HBG7_BACHK Sensor protein EC=2.7.13.3 Length = 502 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 181/303 (59%), Gaps = 2/303 (0%) Query: 61 FITPFFLLVFTITFFGLTRRIVKDLMTLERGLQMITEGDLNHRVPVHRQDELGRVAYNIN 120 F T ++VF +FF +T++ +K++ + +G+ I +G+L +R+ QDE+ + NIN Sbjct: 199 FPTLLGVIVFIFSFFYITKKKMKEIEVMVQGVNEIAKGNLAYRIEEKGQDEMALLTKNIN 258 Query: 121 QMTERLQLQIAKERENERSKMELITGISHDLRTPLTSIIGYIELLRTKSFQDQEEYTRFV 180 QM E L + I KERE ER K ELIT +SHDLRTPLTSI+GY+ LL+ ++++E+Y ++ Sbjct: 259 QMAEGLMVNIEKEREIERQKNELITNVSHDLRTPLTSIMGYLRLLQDAKYENREQYDEYI 318 Query: 181 QNTYNKSIHLKKLLDDLFEYTRLNSIDTRQNVHRIDXXXXXXXXXXXXXPIAHDNAIHII 240 + ++KS LK L++DLFEYT+L + + I P A ++ + I Sbjct: 319 KIAFSKSEQLKNLIEDLFEYTKLTNENIVLEKQEICINEMLDQLIEELVPQAEEHGLSIT 378 Query: 241 KDIGSSPVLIFVDSDKIARAIDNLLMNALKYSVKPGAIHVRMITDPKQAAIEVENRGIPL 300 K+ + VD +KI R DNLLMNA+KYS G I V + + I V+N Sbjct: 379 KEFPEERIHAVVDPEKIVRVFDNLLMNAIKYSKDEGEIKVSLQRQKETIQISVKNPSEEF 438 Query: 301 TREQQEKLFERFYKVDHSRSSEGIQTGAGLGLSIARNIAERHGGTLTLDHVNDVFTFRLT 360 T+++ E LFERFYK D SRS + G+GLGL+IA++I + GG + ++ + + F +T Sbjct: 439 TKKELEHLFERFYKKDQSRSR--VSEGSGLGLAIAKSIVDMQGGDIRAEYEDGLVQFIIT 496 Query: 361 IPI 363 +PI Sbjct: 497 LPI 499 >C2UQ03.1 C2UQ03_BACCE Putative uncharacterized protein Length = 473 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 116/315 (36%), Positives = 181/315 (57%), Gaps = 5/315 (1%) Query: 52 DWLKKAFPYFITPFFLLVFTITFFGLTRRIVKDLMTLERGLQMITEGDLNHRVPVHRQDE 111 D + FP+FI +LVF +FF +T+R +K + + +G++ I +G+L +R+ +DE Sbjct: 164 DTQEGPFPFFIG---VLVFIFSFFYITKRKMKQIEAMAQGVKEIEKGNLAYRIEKKGEDE 220 Query: 112 LGRVAYNINQMTERLQLQIAKERENERSKMELITGISHDLRTPLTSIIGYIELLRTKSFQ 171 + + NIN M E L I KER+ E+ K ELIT +SHDLRTPLTSI+GY+ LLR ++ Sbjct: 221 IASLTENINNMAEELMNNIEKERKLEKQKNELITNVSHDLRTPLTSIMGYLRLLRDSKYE 280 Query: 172 DQEEYTRFVQNTYNKSIHLKKLLDDLFEYTRLNSIDTRQNVHRIDXXXXXXXXXXXXXPI 231 ++E++ + + + KS LK L++DLFEYT+L + + P Sbjct: 281 NKEQHDEYTRIAFAKSEQLKNLIEDLFEYTKLTNEQVVLEKREVCINELLEQLIEELVPQ 340 Query: 232 AHDNAIHIIKDIGSSPVLIFVDSDKIARAIDNLLMNALKYSVKPGAIHVRMITDPKQAAI 291 A ++ + +K VDS+K+ R DNLLMNA+KYS G I V + ++ I Sbjct: 341 AEEHGLAFVKKFPEERAYAAVDSEKMVRVFDNLLMNAIKYSKDDGEIKVSLQRQRREVRI 400 Query: 292 EVENRGIPLTREQQEKLFERFYKVDHSRSSEGIQTGAGLGLSIARNIAERHGGTLTLDHV 351 + N TRE+ LFERFYK D SRS + G+GLGL+IA++I E GG++ ++ Sbjct: 401 VIANHSEEFTREELGSLFERFYKKDQSRSR--VTEGSGLGLAIAKSIVELQGGSIRAEYE 458 Query: 352 NDVFTFRLTIPIKDR 366 + + F + +PI ++ Sbjct: 459 DGIIQFIVALPIIEK 473 >B9J4J6.1 B9J4J6_BACCQ Sensor protein EC=2.7.13.3 Length = 502 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 180/303 (59%), Gaps = 2/303 (0%) Query: 61 FITPFFLLVFTITFFGLTRRIVKDLMTLERGLQMITEGDLNHRVPVHRQDELGRVAYNIN 120 F T ++VF +FF +T++ +K++ + +G+ I +G+L +R+ QDE+ + NIN Sbjct: 199 FPTLLGVIVFIFSFFYMTKKKMKEIEVMVQGVNEIAKGNLAYRIEEKGQDEMALLTKNIN 258 Query: 121 QMTERLQLQIAKERENERSKMELITGISHDLRTPLTSIIGYIELLRTKSFQDQEEYTRFV 180 QM + L + I KERE ER K ELIT +SHDLRTPLTSI+GY+ LL+ ++++E+Y ++ Sbjct: 259 QMAKGLMVNIEKEREIERQKNELITNVSHDLRTPLTSIMGYLRLLQDAKYENREQYDEYI 318 Query: 181 QNTYNKSIHLKKLLDDLFEYTRLNSIDTRQNVHRIDXXXXXXXXXXXXXPIAHDNAIHII 240 + ++KS LK L++DLFEYT+L + + I P A ++ + I Sbjct: 319 KIAFSKSEQLKNLIEDLFEYTKLTNENIVLEKQEICINEMLDQLIEELVPQAEEHGLSIT 378 Query: 241 KDIGSSPVLIFVDSDKIARAIDNLLMNALKYSVKPGAIHVRMITDPKQAAIEVENRGIPL 300 K+ + VD +KI R DNLLMNA+KYS G I V + + I V+N Sbjct: 379 KEFPEERIHAVVDPEKIVRVFDNLLMNAIKYSKDEGEIKVSLQRQKETIQISVKNPSEEF 438 Query: 301 TREQQEKLFERFYKVDHSRSSEGIQTGAGLGLSIARNIAERHGGTLTLDHVNDVFTFRLT 360 T+++ E LFERFYK D SRS + G+GLGL+IA++I + GG + + + + F ++ Sbjct: 439 TKKELEHLFERFYKKDQSRSR--VAEGSGLGLAIAKSIVDMQGGDIRAKYEDGLVQFIIS 496 Query: 361 IPI 363 +PI Sbjct: 497 LPI 499 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,886,763,332 Number of extensions: 70620571 Number of successful extensions: 311306 Number of sequences better than 1.0e-05: 21974 Number of HSP's gapped: 277756 Number of HSP's successfully gapped: 22225 Length of query: 377 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 240 Effective length of database: 1,770,017,148 Effective search space: 424804115520 Effective search space used: 424804115520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)