BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0013.p (166 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5R9.1 B3K5R9_9BACI Trehalose operon repressor 192 7e-48 B4BSH0.1 B4BSH0_9BACI Transcriptional regulator, GntR family 171 2e-41 Q5KZ56.1 Q5KZ56_GEOKA Transcriptional repressor of trehalose ope... 170 3e-41 B7GI24.1 B7GI24_ANOFW Transcriptional regulator, GntR family 170 4e-41 A4INV2.1 A4INV2_GEOTN Transcriptional regulator GntR family 169 6e-41 >B3K5R9.1 B3K5R9_9BACI Trehalose operon repressor Length = 245 Score = 192 bits (489), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 85/152 (55%), Positives = 117/152 (76%) Query: 7 VNKNIYSHIYNDYSARIQSGQLQAGKKIPSESQLAAAYSTSRETVRKALQMLSENGYIHK 66 + NIY +Y DY+ +I++G LQ G K+PSE++LAA Y +RETVRK L +L++NGYIHK Sbjct: 1 MTNNIYWTLYKDYADQIETGALQPGSKLPSENELAATYQITRETVRKGLNLLAQNGYIHK 60 Query: 67 IKGKGSFVLDTQRLNFPVSGLISFKEVADQLGRSIRTIVYENSLVPCSSSVSQRLPIREN 126 +KGKGSFVLDT R+NFPV+GL+S+KE+A+++GR RTIV+E VP ++++ L R + Sbjct: 61 VKGKGSFVLDTGRMNFPVTGLVSYKEMAERIGRKSRTIVHETECVPAGEAIAKELHTRPD 120 Query: 127 EPVWKVIRAREIEGEKIILDKDYFLPSVVPSI 158 VWKVIR+REIEGE+IILD DY L +V + Sbjct: 121 RLVWKVIRSREIEGERIILDVDYLLADIVTGL 152 >B4BSH0.1 B4BSH0_9BACI Transcriptional regulator, GntR family Length = 239 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 80/152 (52%), Positives = 113/152 (74%) Query: 5 ILVNKNIYSHIYNDYSARIQSGQLQAGKKIPSESQLAAAYSTSRETVRKALQMLSENGYI 64 +++++N Y IY+D ++RI+ G+ +A K+PSE++LA Y TSRET+RKAL +LSE+GYI Sbjct: 1 MMMHENKYLAIYHDLASRIRDGEWKAYDKLPSENELAVRYKTSRETIRKALNLLSEHGYI 60 Query: 65 HKIKGKGSFVLDTQRLNFPVSGLISFKEVADQLGRSIRTIVYENSLVPCSSSVSQRLPIR 124 K+KGKGS VLD R FPVSGL+SFKE+A + + +RTIV+E L+ + + Q+L Sbjct: 61 QKMKGKGSIVLDVGRYAFPVSGLVSFKELAQTMKQPVRTIVHELELIKPDAELKQQLRAT 120 Query: 125 ENEPVWKVIRAREIEGEKIILDKDYFLPSVVP 156 + VWKV+R REI+GE+IILDKD+FL VP Sbjct: 121 SKDDVWKVVRVREIDGERIILDKDFFLKKNVP 152 >Q5KZ56.1 Q5KZ56_GEOKA Transcriptional repressor of trehalose operon (GntR family) Length = 282 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 82/153 (53%), Positives = 112/153 (73%) Query: 4 VILVNKNIYSHIYNDYSARIQSGQLQAGKKIPSESQLAAAYSTSRETVRKALQMLSENGY 63 VIL+++N Y IY+D +RI+ G+ +A K+PSE +LAA Y TSRET+RKAL +LSE+GY Sbjct: 43 VILMHENKYLTIYHDLISRIRRGEWKAYDKLPSEHELAARYETSRETIRKALHLLSEHGY 102 Query: 64 IHKIKGKGSFVLDTQRLNFPVSGLISFKEVADQLGRSIRTIVYENSLVPCSSSVSQRLPI 123 I K+KGKGS VLD + +FPVSGL+SFKE+A + + +RTIV+E +++ + Q L Sbjct: 103 IQKMKGKGSIVLDVGKYDFPVSGLVSFKELAQTMKQPVRTIVHELAIIKPDRELRQHLRA 162 Query: 124 RENEPVWKVIRAREIEGEKIILDKDYFLPSVVP 156 + VWKV+R REI GE+IILDKD+FL VP Sbjct: 163 SSKDEVWKVVRVREIGGERIILDKDFFLKKHVP 195 >B7GI24.1 B7GI24_ANOFW Transcriptional regulator, GntR family Length = 240 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 82/152 (53%), Positives = 109/152 (71%) Query: 7 VNKNIYSHIYNDYSARIQSGQLQAGKKIPSESQLAAAYSTSRETVRKALQMLSENGYIHK 66 +++N Y IYND ++I+ G + G KIPSE+QL Y TSRET+RKAL +LSE+GYI K Sbjct: 1 MSENKYLSIYNDLLSKIEKGIFKPGMKIPSENQLVEQYETSRETIRKALNLLSEHGYIQK 60 Query: 67 IKGKGSFVLDTQRLNFPVSGLISFKEVADQLGRSIRTIVYENSLVPCSSSVSQRLPIREN 126 IKGKGS VLD ++ +FP+SGLISFKE+A +LG+ RTIV + V ++ + L + Sbjct: 61 IKGKGSIVLDVRKFDFPISGLISFKELAQKLGKPSRTIVEQLETVKPDETLKKHLHVTAR 120 Query: 127 EPVWKVIRAREIEGEKIILDKDYFLPSVVPSI 158 E +WKVIR REIEGE+IILDKD+F VP + Sbjct: 121 EDIWKVIRVREIEGERIILDKDFFNKKFVPFL 152 >A4INV2.1 A4INV2_GEOTN Transcriptional regulator GntR family Length = 237 Score = 169 bits (429), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 80/150 (53%), Positives = 111/150 (74%) Query: 7 VNKNIYSHIYNDYSARIQSGQLQAGKKIPSESQLAAAYSTSRETVRKALQMLSENGYIHK 66 +++N Y IY+D ++RI+ G+ +A K+PSE++LA Y TSRET+RKAL +LSE+GYI K Sbjct: 1 MHENKYLAIYHDLASRIRDGEWKAYDKLPSENELAVRYKTSRETIRKALNLLSEHGYIQK 60 Query: 67 IKGKGSFVLDTQRLNFPVSGLISFKEVADQLGRSIRTIVYENSLVPCSSSVSQRLPIREN 126 +KGKGS VLD R FPVSGL+SFKE+A + + +RTIV+E L+ + + Q+L Sbjct: 61 MKGKGSIVLDVGRYAFPVSGLVSFKELAQTMKQPVRTIVHELELIKPDAELKQQLRATSK 120 Query: 127 EPVWKVIRAREIEGEKIILDKDYFLPSVVP 156 + VWKV+R REI+GE+IILDKD+FL VP Sbjct: 121 DDVWKVVRVREIDGERIILDKDFFLKKNVP 150 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 892,390,297 Number of extensions: 32668515 Number of successful extensions: 107449 Number of sequences better than 1.0e-05: 2437 Number of HSP's gapped: 106861 Number of HSP's successfully gapped: 2437 Length of query: 166 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 41 Effective length of database: 1,883,069,328 Effective search space: 77205842448 Effective search space used: 77205842448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)