BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0007.p
         (73 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C3H2W4.1 C3H2W4_BACTU Zn-dependent hydrolase                           78   3e-13
C2X0E1.1 C2X0E1_BACCE Zn-dependent hydrolase                           77   7e-13
C3L8H4.1 C3L8H4_BACAC RNA-metabolising metallo-beta-lactamase          75   2e-12
Q81FH4.1 Q81FH4_BACCR Zn-dependent hydrolase EC=3.-.-.-                74   3e-12
B7HI18.1 B7HI18_BACC4 RNA-metabolising metallo-beta-lactamase          74   3e-12

>C3H2W4.1 C3H2W4_BACTU Zn-dependent hydrolase
          Length = 557

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/64 (57%), Positives = 47/64 (73%), Gaps = 4/64 (6%)

Query: 3  MKMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLLXXXXXXFLIFPTC 62
          M +  ++L I ALGGV EIGKNMY++QY+DDI++IDCGSKFPDESLL       LI P  
Sbjct: 1  MSIINDKLSIFALGGVNEIGKNMYVIQYSDDIVIIDCGSKFPDESLLGID----LIIPDV 56

Query: 63 SAIQ 66
          + +Q
Sbjct: 57 TYLQ 60


>C2X0E1.1 C2X0E1_BACCE Zn-dependent hydrolase
          Length = 557

 Score = 76.6 bits (187), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 4/64 (6%)

Query: 3  MKMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLLXXXXXXFLIFPTC 62
          M    E+L I ALGGV EIGKNMY++QY++DI++IDCGSKFPDESLL       LI P  
Sbjct: 1  MSTINEKLSIFALGGVNEIGKNMYVIQYSNDIVIIDCGSKFPDESLLGID----LIIPDI 56

Query: 63 SAIQ 66
          + +Q
Sbjct: 57 TYLQ 60


>C3L8H4.1 C3L8H4_BACAC RNA-metabolising metallo-beta-lactamase
          Length = 157

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 3  MKMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLLXXXXXXFLIFPTC 62
          MK     L I ALGGV EIGKNMY +QY +DI+VIDCGSKFPDESLL       LI P  
Sbjct: 1  MKSLKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLLGID----LIIPDV 56

Query: 63 SAIQTKSKPL 72
          + +Q   + +
Sbjct: 57 TYLQENKEKI 66


>Q81FH4.1 Q81FH4_BACCR Zn-dependent hydrolase EC=3.-.-.-
          Length = 557

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 3  MKMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLLXXXXXXFLIFPTC 62
          MK     L I ALGGV EIGKNMY +QY +DI+VIDCGSKFPDESLL       LI P  
Sbjct: 1  MKALKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLLGID----LIIPDV 56

Query: 63 SAIQTKSKPL 72
          + +Q   + +
Sbjct: 57 TYLQENKEKI 66


>B7HI18.1 B7HI18_BACC4 RNA-metabolising metallo-beta-lactamase
          Length = 557

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 3  MKMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLLXXXXXXFLIFPTC 62
          MK     L I ALGGV EIGKNMY +QY +DI+VIDCGSKFPDESLL       LI P  
Sbjct: 1  MKALKNNLSIVALGGVNEIGKNMYAIQYENDIVVIDCGSKFPDESLLGID----LIIPDV 56

Query: 63 SAIQTKSKPL 72
          + +Q   + +
Sbjct: 57 TYLQENKEKI 66


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.325    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 390,991,101
Number of extensions: 12189493
Number of successful extensions: 26414
Number of sequences better than 1.0e-05: 171
Number of HSP's gapped: 26420
Number of HSP's successfully gapped: 171
Length of query: 73
Length of database: 3,060,696,203
Length adjustment: 44
Effective length of query: 29
Effective length of database: 2,646,171,543
Effective search space: 76738974747
Effective search space used: 76738974747
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)