BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0005.p (189 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8FIZ7.1 A8FIZ7_BACP2 Possible chemotaxis sensory transducer 152 1e-35 B4AJW1.1 B4AJW1_BACPU Putative chemotaxis sensory transducer 151 2e-35 B1HT75.1 B1HT75_LYSSC Methyl-accepting chemotaxis protein 3 130 4e-29 A8FC71.1 A8FC71_BACP2 Possible chemotaxis sensory transducer 130 5e-29 A3I537.1 A3I537_9BACI Methyl-accepting chemotaxis-like protein (... 130 5e-29 >A8FIZ7.1 A8FIZ7_BACP2 Possible chemotaxis sensory transducer Length = 279 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/180 (47%), Positives = 115/180 (63%) Query: 1 VPVYDXXXXXXXXXXXXYTLENEDKMEQLTSSIEQISGQLVDMVQNVAAQSEELSATTAQ 60 VP+ D Y N+ +++ + + Q S +LV MVQ VAA SEEL AT+ Q Sbjct: 87 VPIKDETGQVVAAFCVAYDQTNQQRLDDIMTESNQASEKLVAMVQQVAAHSEELQATSEQ 146 Query: 61 ILDNSRKTVEESNQVSKVTGFIREISEQTNLLGLNAAIEAARVGQEGAGFGVVATEVRKL 120 IL N++ TVE S+++++V+ I+ IS+QTNLLGLNA+IEAARVG+ GAGFGVVATEVRKL Sbjct: 147 ILQNTKTTVENSSKINQVSNLIKGISDQTNLLGLNASIEAARVGEAGAGFGVVATEVRKL 206 Query: 121 SVHTKEATKTIEDSLNTVQRSIRQMEKXXXXXXXXXXXXXXLVTEFSDVIERLNKTSGEM 180 S H K+AT IE +L VQ SI+ ME+ LV F+ +IE L++T+ M Sbjct: 207 STHAKQATTDIETALKDVQGSIKGMEEEIGQIVASSEHQAELVGTFTKIIEGLHETNETM 266 >B4AJW1.1 B4AJW1_BACPU Putative chemotaxis sensory transducer Length = 279 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/180 (46%), Positives = 115/180 (63%) Query: 1 VPVYDXXXXXXXXXXXXYTLENEDKMEQLTSSIEQISGQLVDMVQNVAAQSEELSATTAQ 60 VP+ D Y N+ +++ + + + S +LV MVQ VAA SEEL AT+ Q Sbjct: 87 VPIKDEAGQVVAAFCVAYDQTNQQRLDDIMTESNEASEKLVAMVQQVAAHSEELQATSEQ 146 Query: 61 ILDNSRKTVEESNQVSKVTGFIREISEQTNLLGLNAAIEAARVGQEGAGFGVVATEVRKL 120 IL N++ TVE S+++++V+ I+ IS+QTNLLGLNA+IEAARVG+ GAGFGVVATEVRKL Sbjct: 147 ILQNTKTTVENSSKINQVSNLIKGISDQTNLLGLNASIEAARVGEAGAGFGVVATEVRKL 206 Query: 121 SVHTKEATKTIEDSLNTVQRSIRQMEKXXXXXXXXXXXXXXLVTEFSDVIERLNKTSGEM 180 S H K+AT IE +L VQ SI+ ME+ LV F+ +IE L++T+ M Sbjct: 207 STHAKQATTDIETALKDVQGSIKGMEEEIAQIVASSEHQAELVGTFTKIIEGLHETNETM 266 >B1HT75.1 B1HT75_LYSSC Methyl-accepting chemotaxis protein 3 Length = 274 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 71/171 (41%), Positives = 105/171 (61%) Query: 19 TLENEDKMEQLTSSIEQISGQLVDMVQNVAAQSEELSATTAQILDNSRKTVEESNQVSKV 78 ++NE K+E S+++ I L D V +A+ SEEL+AT+ +I ++ +E+S + + V Sbjct: 104 PIDNELKLEDYMSTMDNIVNSLQDKVHTIASHSEELAATSEEINKQAQHALEDSEKTNAV 163 Query: 79 TGFIREISEQTNLLGLNAAIEAARVGQEGAGFGVVATEVRKLSVHTKEATKTIEDSLNTV 138 T I+ IS QTNLLGLNA+IEAAR GQ GAGF +VA EVRKLS T AT+ IE SL + Sbjct: 164 TDLIKSISRQTNLLGLNASIEAARAGQHGAGFNIVAQEVRKLSFETSSATENIESSLRNI 223 Query: 139 QRSIRQMEKXXXXXXXXXXXXXXLVTEFSDVIERLNKTSGEMAKFINSIIQ 189 R++ +++ LV +FS++IE L S EM F++ ++ Sbjct: 224 NRNLENLKQNMGQINDATNEQAQLVQDFSEIIEELTVLSREMKGFMHDALK 274 >A8FC71.1 A8FC71_BACP2 Possible chemotaxis sensory transducer Length = 267 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 72/188 (38%), Positives = 113/188 (60%) Query: 1 VPVYDXXXXXXXXXXXXYTLENEDKMEQLTSSIEQISGQLVDMVQNVAAQSEELSATTAQ 60 +P+++ + L+N+ ++E S+ I + + V VAA SEELSAT+ + Sbjct: 78 LPIFNENGQVIGALALGFPLKNQIELEAYMDSLNDIIQSIQEKVHEVAAHSEELSATSEE 137 Query: 61 ILDNSRKTVEESNQVSKVTGFIREISEQTNLLGLNAAIEAARVGQEGAGFGVVATEVRKL 120 + +++T+E S Q + +T I+ IS QT+LLGLNA+IEAAR G+EGAGF VVA+EV+KL Sbjct: 138 MTLQTQQTLESSKQTADITKMIKGISRQTSLLGLNASIEAARAGKEGAGFSVVASEVQKL 197 Query: 121 SVHTKEATKTIEDSLNTVQRSIRQMEKXXXXXXXXXXXXXXLVTEFSDVIERLNKTSGEM 180 S T AT+ IE SL + +I + + LVTEFS++++RL S +M Sbjct: 198 SSETSRATENIESSLQGISSNIHTLLESMDHMKGSSSEQASLVTEFSEIVDRLTTVSKDM 257 Query: 181 AKFINSII 188 KF+ +++ Sbjct: 258 KKFMQTVM 265 >A3I537.1 A3I537_9BACI Methyl-accepting chemotaxis-like protein (Chemotaxis sensory transducer) Length = 274 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 71/171 (41%), Positives = 105/171 (61%) Query: 19 TLENEDKMEQLTSSIEQISGQLVDMVQNVAAQSEELSATTAQILDNSRKTVEESNQVSKV 78 ++NE K+E S+++ I L D V +A+ SEEL+AT+ +I ++ +E+S + + V Sbjct: 104 PIDNELKLEDYMSTMDNIVNNLQDKVHTIASHSEELAATSEEINKQAQHALEDSEKTNDV 163 Query: 79 TGFIREISEQTNLLGLNAAIEAARVGQEGAGFGVVATEVRKLSVHTKEATKTIEDSLNTV 138 T I+ IS QTNLLGLNA+IEAAR GQ GAGF +VA EVRKLS T AT+ IE SL + Sbjct: 164 TDLIKSISRQTNLLGLNASIEAARAGQHGAGFNIVAQEVRKLSFETSSATENIEASLRNI 223 Query: 139 QRSIRQMEKXXXXXXXXXXXXXXLVTEFSDVIERLNKTSGEMAKFINSIIQ 189 R++ +++ LV +FS++IE L S EM F++ ++ Sbjct: 224 NRNLENLKQNMGQINDATNEQAQLVQDFSEIIEELTVLSREMKGFMHDALK 274 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.308 0.124 0.307 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 692,941,821 Number of extensions: 20265283 Number of successful extensions: 120202 Number of sequences better than 1.0e-05: 12591 Number of HSP's gapped: 118101 Number of HSP's successfully gapped: 12626 Length of query: 189 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 61 Effective length of database: 1,854,806,283 Effective search space: 113143183263 Effective search space used: 113143183263 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 127 (53.5 bits)