BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0004.p
         (91 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B4AF16.1 B4AF16_BACPU Putative chemotaxis sensory transducer           65   2e-09
B4APC8.1 B4APC8_BACPU Putative chemotaxis sensory transducer           55   3e-06
B0TDK3.1 B0TDK3_HELMI Methyl-accepting chemotaxis protein              54   4e-06

>B4AF16.1 B4AF16_BACPU Putative chemotaxis sensory transducer
          Length = 274

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 44/76 (57%)

Query: 1  MDNLNALVLAAPFFKQIHSQDIMIGVTDKEIFHYYAPSKVLDFGLTKGSPIPPDDPSLSN 60
          MD L ++V AAP+  QI   ++ +GVTD+E F  Y PSK LDF +  G  I PDD +L  
Sbjct: 1  MDILQSIVTAAPYIMQILKNEVTLGVTDREKFLLYLPSKDLDFQIRAGEFIKPDDLNLKK 60

Query: 61 ALAGRATTNRLAPELY 76
          AL G  +   L   +Y
Sbjct: 61 ALRGEISNISLPESVY 76


>B4APC8.1 B4APC8_BACPU Putative chemotaxis sensory transducer
          Length = 276

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 41/76 (53%)

Query: 1  MDNLNALVLAAPFFKQIHSQDIMIGVTDKEIFHYYAPSKVLDFGLTKGSPIPPDDPSLSN 60
          M+ L+  V  A   +++  + I+ G+TD E    Y PSK +DFG+  G P+ P+D +++ 
Sbjct: 1  MNRLDYYVEMAQLIRKVLDESILFGITDTEKVLCYYPSKTIDFGMKVGDPLNPEDQNVAT 60

Query: 61 ALAGRATTNRLAPELY 76
           L G+     L   LY
Sbjct: 61 TLRGQEYDGHLPESLY 76


>B0TDK3.1 B0TDK3_HELMI Methyl-accepting chemotaxis protein
          Length = 279

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 4  LNALVLAAPFFKQIHSQDIMIGVTDKEIFHYYAPSKVLDFGLTKGSPIPPDD 55
          LN L+ +AP+FK I   D M+G+TD+E F YY+P K +D  +  G  + P D
Sbjct: 12 LNELIRSAPYFKAIIPFDCMMGITDREHFIYYSPGKAIDIRIRVGEAVKPGD 63


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 530,243,193
Number of extensions: 19129850
Number of successful extensions: 35865
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 35866
Number of HSP's successfully gapped: 3
Length of query: 91
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 31
Effective length of database: 2,495,435,303
Effective search space: 77358494393
Effective search space used: 77358494393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)