BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0543.0031.p
         (123 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKW1.1 B3KKW1_9BACI Aspartate 1-decarboxylase EC=4.1.1.11           199   5e-50
B1DM01.1 B1DM01_9BACL Aspartate 1-decarboxylase EC=4.1.1.11           195   9e-49
B0TBP6.1 PAND_HELMI Aspartate 1-decarboxylase EC=4.1.1.11             182   1e-44
B4BFA4.1 B4BFA4_CLOTM Aspartate 1-decarboxylase EC=4.1.1.11           182   1e-44
A3DDV5.1 PAND_CLOTH Aspartate 1-decarboxylase EC=4.1.1.11             182   1e-44

>B3KKW1.1 B3KKW1_9BACI Aspartate 1-decarboxylase EC=4.1.1.11
          Length = 127

 Score =  199 bits (507), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 99/122 (81%), Positives = 105/122 (86%)

Query: 1   MMKSKIHRATVTEANLNYVGSITIDENLMEAADLLENEKVQIVDNNNGSRLETYVIPGPR 60
           MMKSKIHRATVTEANLNYVGSITIDE+LMEAADLLENEKVQIV+NNNG+RLETYVI G R
Sbjct: 5   MMKSKIHRATVTEANLNYVGSITIDEDLMEAADLLENEKVQIVNNNNGARLETYVIKGER 64

Query: 61  GSGVICLNGAAARLVQPGDTVIIISYAILSSEELAAHKPTVVFVDADNKPVKLADHELHA 120
           GSGVICLNGAAARLVQPGD VIIISYA++S EE   H PTVV VD  NKPV     E+HA
Sbjct: 65  GSGVICLNGAAARLVQPGDNVIIISYAMMSKEEYDHHTPTVVIVDESNKPVTTEYREVHA 124

Query: 121 TI 122
            I
Sbjct: 125 AI 126


>B1DM01.1 B1DM01_9BACL Aspartate 1-decarboxylase EC=4.1.1.11
          Length = 127

 Score =  195 bits (496), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 92/122 (75%), Positives = 106/122 (86%)

Query: 1   MMKSKIHRATVTEANLNYVGSITIDENLMEAADLLENEKVQIVDNNNGSRLETYVIPGPR 60
           MMKSK+HRATVTEANLNYVGSITIDE+LM+AAD+ ENEKVQIV+NNNG+R ETYVI G R
Sbjct: 5   MMKSKLHRATVTEANLNYVGSITIDEDLMDAADIWENEKVQIVNNNNGARFETYVITGKR 64

Query: 61  GSGVICLNGAAARLVQPGDTVIIISYAILSSEELAAHKPTVVFVDADNKPVKLADHELHA 120
           GSGVICLNGAAAR VQPGD VIIISYA +S+EE  AHKP V  +D+DN+P+K    E+HA
Sbjct: 65  GSGVICLNGAAARQVQPGDQVIIISYASMSNEEARAHKPIVTILDSDNRPLKSLSEEIHA 124

Query: 121 TI 122
           T+
Sbjct: 125 TV 126


>B0TBP6.1 PAND_HELMI Aspartate 1-decarboxylase EC=4.1.1.11
          Length = 132

 Score =  182 bits (461), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 99/117 (84%)

Query: 1   MMKSKIHRATVTEANLNYVGSITIDENLMEAADLLENEKVQIVDNNNGSRLETYVIPGPR 60
           M KSKIHRATVTEANLNYVGSITIDE+LM+AAD+LENEK+Q+V+NNNG+R ETYVIPGPR
Sbjct: 5   MHKSKIHRATVTEANLNYVGSITIDEDLMDAADVLENEKIQVVNNNNGARFETYVIPGPR 64

Query: 61  GSGVICLNGAAARLVQPGDTVIIISYAILSSEELAAHKPTVVFVDADNKPVKLADHE 117
           GSGVICLNGAAARLVQPGD VI+I+Y I    E   H+PTV+F+D  N+ +  A  E
Sbjct: 65  GSGVICLNGAAARLVQPGDKVILITYGIYDDAEARQHRPTVIFLDDQNRIIADARRE 121


>B4BFA4.1 B4BFA4_CLOTM Aspartate 1-decarboxylase EC=4.1.1.11
          Length = 126

 Score =  182 bits (461), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/122 (70%), Positives = 97/122 (79%)

Query: 1   MMKSKIHRATVTEANLNYVGSITIDENLMEAADLLENEKVQIVDNNNGSRLETYVIPGPR 60
           +MKSKIHRATVTEANL+YVGSITIDE+LMEAAD++ENEKVQ+VDNNNG+R ETYVI G R
Sbjct: 5   LMKSKIHRATVTEANLDYVGSITIDEDLMEAADIMENEKVQVVDNNNGNRFETYVIKGER 64

Query: 61  GSGVICLNGAAARLVQPGDTVIIISYAILSSEELAAHKPTVVFVDADNKPVKLADHELHA 120
           GSG+ICLNGAAARLV PGD +IIISY I   EE     P VVFVD  NK + +   E H 
Sbjct: 65  GSGMICLNGAAARLVHPGDLIIIISYGIFDREEAKTFNPKVVFVDEKNKIINIKSEEKHG 124

Query: 121 TI 122
            I
Sbjct: 125 EI 126


>A3DDV5.1 PAND_CLOTH Aspartate 1-decarboxylase EC=4.1.1.11
          Length = 126

 Score =  182 bits (461), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/122 (70%), Positives = 97/122 (79%)

Query: 1   MMKSKIHRATVTEANLNYVGSITIDENLMEAADLLENEKVQIVDNNNGSRLETYVIPGPR 60
           +MKSKIHRATVTEANL+YVGSITIDE+LMEAAD++ENEKVQ+VDNNNG+R ETYVI G R
Sbjct: 5   LMKSKIHRATVTEANLDYVGSITIDEDLMEAADIMENEKVQVVDNNNGNRFETYVIKGER 64

Query: 61  GSGVICLNGAAARLVQPGDTVIIISYAILSSEELAAHKPTVVFVDADNKPVKLADHELHA 120
           GSG+ICLNGAAARLV PGD +IIISY I   EE     P VVFVD  NK + +   E H 
Sbjct: 65  GSGMICLNGAAARLVHPGDLIIIISYGIFDREEAKTFNPKVVFVDEKNKIINIKSEEKHG 124

Query: 121 TI 122
            I
Sbjct: 125 EI 126


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 702,314,635
Number of extensions: 26870474
Number of successful extensions: 65664
Number of sequences better than 1.0e-05: 854
Number of HSP's gapped: 65577
Number of HSP's successfully gapped: 854
Length of query: 123
Length of database: 3,060,696,203
Length adjustment: 89
Effective length of query: 34
Effective length of database: 2,222,225,868
Effective search space: 75555679512
Effective search space used: 75555679512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)