BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0543.0030.p
         (213 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKW2.1 B3KKW2_9BACI Putative uncharacterized protein                192   1e-47
C0ZCH3.1 C0ZCH3_BREBN Putative uncharacterized protein                 69   3e-10

>B3KKW2.1 B3KKW2_9BACI Putative uncharacterized protein
          Length = 209

 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 140/213 (65%), Gaps = 4/213 (1%)

Query: 1   VFQHLFAEMNKMLQEIAEDFPTAEGARRNDLLCKYNMLHRLSDEVMDEWLVFAEKLSEFR 60
           +FQH+FAEMN ML EI + +P+A+G ++  L+  +NML  +S+ +++EWL F EK++ FR
Sbjct: 1   MFQHVFAEMNNMLDEIVKHYPSAQGPQKQALVQNWNMLKSMSEGIIEEWLHFEEKMAIFR 60

Query: 61  QNADFSPPSEEEMPQIEAPELAMDSFVRGQGYYKLLMYRKCIEQFKQVITRYPDSXXXXX 120
           ++A  SPP     P  EAPEL +D+FVRGQGYYKLLM++  I+QF+     +PDS     
Sbjct: 61  ESAA-SPPV---FPPTEAPELQLDAFVRGQGYYKLLMFQPAIQQFEAAAAVFPDSLLIKL 116

Query: 121 XXXXXXXQEGELDVSWGHLHHMLALIRERKLKAMIYNALGCIRASQERYPEAQELFSLSL 180
                    G+   +   L  +L L   RKL+AMIYNALGCI     +  +A+E F+L++
Sbjct: 117 YIAMSHLYLGQTAQASDVLISILPLADNRKLRAMIYNALGCIEVLNGQQAKAEEHFALAI 176

Query: 181 QHDPLLPEPSVNLEVCRRRGGKLQFGHQLVSLL 213
             DP LP+P +NLEVC++  G+LQ+G QL+SLL
Sbjct: 177 HSDPTLPDPMINLEVCKQNRGELQYGSQLISLL 209


>C0ZCH3.1 C0ZCH3_BREBN Putative uncharacterized protein
          Length = 469

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 15/213 (7%)

Query: 6   FAEMNKMLQEIAEDFPTAEGARRNDLLCKYNMLHRLSDEVMDEWLVFAEKLSEFRQNA-- 63
           F  +    Q I E +  A    R  L  +   L ++SD V+D WL F EKLS   +N   
Sbjct: 7   FHTLRNKAQTIEEKWQGASEQERLQLAEQLFQLRQVSDTVVDLWLQFEEKLSNAIRNIKE 66

Query: 64  -DFSPPSEEE---MPQI--EAPELAMDS------FVRGQGYYKLLMYRKCIEQFKQVITR 111
            +   P+EE+    P++  E+P+ A+++      F RG+G+Y L M++   + F +++ +
Sbjct: 67  MEGQLPAEEKKAHQPKVKTESPK-AIETNTYEPIFRRGEGFYHLRMFQDAKKCFAELVQK 125

Query: 112 YPDSXXXXXXXXXXXXQEGELDVSWGHLHHMLALIRERKLKAMIYNALGCIRASQERYPE 171
            PD                E ++++     +        + A+ +NA+GCI A +E++ E
Sbjct: 126 SPDWESGRLYYAYSLLLCEEKELAFREFRLLGRTASSPTIVAISFNAIGCILAEEEQWLE 185

Query: 172 AQELFSLSLQHDPLLPEPSVNLEVCRRRGGKLQ 204
           A + F  SL+  P   E   NL +C  R G  Q
Sbjct: 186 AAQAFKTSLEIKPEQEEAKYNLALCYLRDGDAQ 218


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,197,932,082
Number of extensions: 42828809
Number of successful extensions: 95147
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 95143
Number of HSP's successfully gapped: 2
Length of query: 213
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 83
Effective length of database: 1,835,964,253
Effective search space: 152385032999
Effective search space used: 152385032999
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)