BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0543.0029.p (953 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKW3.1 B3KKW3_9BACI DnaQ family exonuclease/DinG family helicase 1473 0.0 B1DLZ9.1 B1DLZ9_9BACL DnaQ family exonuclease/DinG family helica... 1102 0.0 C0ZCH4.1 C0ZCH4_BREBN Probable ATP-dependent helicase 640 0.0 Q9KC83.1 Q9KC83_BACHD ATP-dependent DNA helicase 592 e-167 C2W664.1 C2W664_BACCE DnaQ family exonuclease/DinG family helicase 588 e-166 >B3KKW3.1 B3KKW3_9BACI DnaQ family exonuclease/DinG family helicase Length = 1007 Score = 1473 bits (3814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 694/949 (73%), Positives = 798/949 (84%) Query: 1 MKFAVLDFETTGTQSVGEIIQVGLAIIEEDRSISRVYGSYVKPGTPIPPFITGLTGITDS 60 MKFAVLDFETTG QS EIIQVGLAIIEEDRSISRVYG+YV PG PIPPFITGLTGI+DS Sbjct: 50 MKFAVLDFETTGNQSADEIIQVGLAIIEEDRSISRVYGTYVNPGIPIPPFITGLTGISDS 109 Query: 61 DVQDAXXXXXXXXXXXXXXXXXXXXGHNVAFDFHFLQNALDRCGYLPFQGRILDTIDFLK 120 DV DA GHNVAFDF+FLQNALDRCGYLPF GRILDT+ FLK Sbjct: 110 DVADAPSLEEMMMELVPMLDDVVLVGHNVAFDFNFLQNALDRCGYLPFSGRILDTMHFLK 169 Query: 121 ICFPSLTTYQLGAVSAHFGLTHERPHQADSDALATALVLLKCLEELYSLPLLTIQRLNEL 180 ICFPSL +YQLG VS+HFGL H+RPHQADSDALATA LLKCLEE+ LPLLTIQRL++L Sbjct: 170 ICFPSLPSYQLGMVSSHFGLEHDRPHQADSDALATAYALLKCLEEIDELPLLTIQRLSDL 229 Query: 181 FADEDSDLAWYFDGLLHEREMETFQPEGELNFYRQLALAVGDWTELMPPREEGTGNPAQN 240 FADEDSDLAW+FDG+ +RE + Q +YRQ ALAV DW ++ P R+E NP + Sbjct: 230 FADEDSDLAWFFDGIRSDREHQAVQAGDTHTYYRQFALAVDDWNDIAPVRDETEPNPLAD 289 Query: 241 ITFEEYMEEVTLRLKETLPQYESREAQEIMIHEVITALESDKHLLIEAGTGTGKSLGYLL 300 ++FE+YM +V RLKETLP YESR+AQ++M EV+ AL+ +KHLLIEAGTGTGKSLGYLL Sbjct: 290 VSFEQYMNDVRERLKETLPHYESRDAQDMMFQEVMQALDDNKHLLIEAGTGTGKSLGYLL 349 Query: 301 PAIYHSVRSGQKVMVSTHTINLQDQLRERDIPLLTNVVPFPFKAAVFKGRGHYLCLRKFE 360 P+IY SV+ QKVMVSTHTINLQ+QLR+RDIPLLT VVPFPFKAA+FKGRGHYLCLRKFE Sbjct: 350 PSIYQSVKQEQKVMVSTHTINLQEQLRDRDIPLLTQVVPFPFKAAIFKGRGHYLCLRKFE 409 Query: 361 HKINKKDFASPREEALTAAQMIVWLTQTQSGDDEELNLNGRGGDFWETVASDTDSCLGRS 420 HKIN++DF SP+E+ +TAAQM+VWLTQT++GDDEELNL GRGGDFWET++SD+DSCLGR+ Sbjct: 410 HKINRRDFHSPKEDVITAAQMLVWLTQTENGDDEELNLGGRGGDFWETISSDSDSCLGRA 469 Query: 421 CPWFRKCYYHRAKHEAGIADVVVTNHSKLFADVKAGHQLLPAYEHLVIDEAHHLEDIAGK 480 CPWFRKCYYHRAKHEAGIADVV+TNHSKLF DVKA HQLLP+YE LVIDEAHHLED+AGK Sbjct: 470 CPWFRKCYYHRAKHEAGIADVVITNHSKLFTDVKANHQLLPSYERLVIDEAHHLEDVAGK 529 Query: 481 HLGMQMKYFTVAHTLTRLYKDSKSGQLPVLRQTLQSSGNEQAAEWSGVIDRIYPDLLTVR 540 HLG+QMKYF+V HTLTRLYKDS+SGQLP LRQ LQ+S +E+A EWS VIDR+YPDL+TV+ Sbjct: 530 HLGLQMKYFSVVHTLTRLYKDSRSGQLPALRQLLQASPHEKAVEWSSVIDRLYPDLITVK 589 Query: 541 ESWDALSDKLFALLPERSDAAAGEAGQLVTRLLPGAQPKGWEEITALENTLNLSLSEIIR 600 E+WD LSD+LF LLPER DA+ G+AGQ RL P +PK W+ + LE+ ++L+L +++R Sbjct: 590 ENWDRLSDQLFGLLPERGDASPGDAGQFSLRLSPLKKPKDWDSMAELEHQIHLTLGDVVR 649 Query: 601 RGDKMLXXXXXXXXXXXXXXLVTDIGGLFKDLASIREQVRFFMNLNDENIVYWMEGSGNY 660 +GDK++ L+TD+ GLFKDLA+ RE +R FM LNDE VYWME +GN+ Sbjct: 650 KGDKLIAEMKEDLDDYSADSLLTDLSGLFKDLAAHREDLRSFMALNDEGTVYWMEANGNF 709 Query: 661 RGKSLQLYAVPVDVSAQLKDLFFDKKKSIVLTSATLSVDKSFQFMIDNLGLGESAEQGRL 720 R KSLQLYAVPVDVS+ LK+LFFDKK+S++LTSATLSVDKSFQFMI+NLGL E+AE G L Sbjct: 710 RSKSLQLYAVPVDVSSHLKELFFDKKQSVILTSATLSVDKSFQFMIENLGLQEAAEAGNL 769 Query: 721 MTALLPSPFKYREQALLVIPRDFPSVKGSVGDARFVDKLVHSLAEAAVATQGRMLVLFTS 780 T LPSPF YREQALLV+PRDFPSVKGSVGDA FV+ LV SLA+ AVAT GRMLVLFTS Sbjct: 770 NTVQLPSPFNYREQALLVVPRDFPSVKGSVGDALFVNTLVKSLADTAVATHGRMLVLFTS 829 Query: 781 YKMLRQVYDPLKEALASQDIAVLGQGVEGGSRSKLIRRFQDSAASVLLGTSSFWEGVDIP 840 Y+MLRQV++PLKEALAS DI VLGQG++G SR+KLIRRFQDS+ASVLLGTSSFWEGVDIP Sbjct: 830 YRMLRQVHEPLKEALASSDITVLGQGMDGTSRTKLIRRFQDSSASVLLGTSSFWEGVDIP 889 Query: 841 GEALTCLAIVRLPFQPPNHPXXXXXXXXXXXXXXNPFMKLSVPQAVIRFKQGFGRLVRTA 900 GEALTCLAIVRLPFQPPNHP NPFMKLSVPQAVIRFKQGFGRLVRTA Sbjct: 890 GEALTCLAIVRLPFQPPNHPLVEAKSELLQQQKKNPFMKLSVPQAVIRFKQGFGRLVRTA 949 Query: 901 QDRGIVIVYDTRVIESYYGKYFLYSLPGPKMEHMLTDQMVPRIAEWLED 949 QD+GIVIVYDTRVIESYYGKYFLYSLPGPKMEHM T+ +VPRI+EWL++ Sbjct: 950 QDKGIVIVYDTRVIESYYGKYFLYSLPGPKMEHMPTEGIVPRISEWLQE 998 >B1DLZ9.1 B1DLZ9_9BACL DnaQ family exonuclease/DinG family helicase EC=2.7.7.7 Length = 953 Score = 1102 bits (2850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 521/948 (54%), Positives = 674/948 (71%), Gaps = 2/948 (0%) Query: 1 MKFAVLDFETTGTQSVGEIIQVGLAIIEEDRSISRVYGSYVKPGTPIPPFITGLTGITDS 60 MKFAVLD ETTG +I+QVGLA+++++ I Y S+V+P IP FIT LTGI Sbjct: 1 MKFAVLDLETTGHSVSDDILQVGLAVLDDNLEIVETYSSFVRPTIEIPAFITQLTGIDAD 60 Query: 61 DVQDAXXXXXXXXXXXXXXXXXXXXGHNVAFDFHFLQNALDRCGYLPFQGRILDTIDFLK 120 V DA HNV FD FL ALDRCGY PF GR LDTI+ L+ Sbjct: 61 MVADAPELDEVLMQLIPYLEDAVLVAHNVNFDAGFLNQALDRCGYHPFIGRRLDTIELLR 120 Query: 121 ICFPSLTTYQLGAVSAHFGLTHERPHQADSDALATALVLLKCLEELYSLPLLTIQRLNEL 180 I +PS+TTYQLGAV+ FG+ H++ H+ADSDA+ATA + + +++L LPLLT+QRL+ L Sbjct: 121 ILYPSITTYQLGAVTELFGIAHDQHHRADSDAIATAELFAQSVQKLRQLPLLTLQRLSFL 180 Query: 181 FADEDSDLAWYFDGLLHEREMETFQPEGELNFYRQLALAVGDWTELMPPREEGTGNPAQN 240 D SDL+W+ L E+ T ++ Q AL G+WT+ P R + +P ++ Sbjct: 181 I-DNGSDLSWFMAETLKYAELHTSIDMNAYQYFNQFALKAGEWTDEQPARADQEDDPLKD 239 Query: 241 ITFEEYMEEVTLRLKETLPQYESREAQEIMIHEVITALESDKHLLIEAGTGTGKSLGYLL 300 ++FE+Y++ + R E P YE REAQ M EV +L SD+HLLIEAGTGTGKSLGYL+ Sbjct: 240 VSFEQYLDGIRQRFMEKYPNYEEREAQTTMFREVYDSLCSDRHLLIEAGTGTGKSLGYLI 299 Query: 301 PAIYHSVRSGQKVMVSTHTINLQDQLRERDIPLLTNVVPFPFKAAVFKGRGHYLCLRKFE 360 PA+Y+ ++ K++VSTHTINLQ+QLR+RD+PLL ++PF F+A++FKGRG+YLCLRKFE Sbjct: 300 PALYYGIQQESKIVVSTHTINLQEQLRQRDVPLLREILPFDFRASIFKGRGNYLCLRKFE 359 Query: 361 HKINKKDFASPREEALTAAQMIVWLTQTQSGDDEELNLNGRGGDFWETVASDTDSCLGRS 420 KIN KD +P ++A+TA+QM+VWL++T++GD EELN +G DFW TVASD DSCL R Sbjct: 360 SKINAKDLVAPIDDAITASQMVVWLSETETGDQEELNFGNKGSDFWSTVASDADSCLNRQ 419 Query: 421 CPWFRKCYYHRAKHEAGIADVVVTNHSKLFADVKAGHQLLPAYEHLVIDEAHHLEDIAGK 480 CPWF++CYYHRAKHE+ IADV +TNHS LF DV+A H+LLP+Y HL+IDEAHH+E++AGK Sbjct: 420 CPWFKRCYYHRAKHESNIADVCITNHSMLFTDVQADHRLLPSYSHLIIDEAHHVEEVAGK 479 Query: 481 HLGMQMKYFTVAHTLTRLYKDSKSGQLPVLRQTLQSSGNEQAAEWSGVIDRIYPDLLTVR 540 HLGMQ+ YF++ H TRL+KD++SG LP LR LQ +E+ W+ ID + P V+ Sbjct: 480 HLGMQLNYFSLTHQTTRLFKDARSGLLPALRLRLQQEDDERVQAWTETIDTVIPVFQDVK 539 Query: 541 ESWDALSDKLFALLPERSDAAAGEAGQLVTRLLPGAQPKGWEEITALENTLNLSLSEIIR 600 E WD L + L+A + E S A + GQ V RL PKGW+++ +EN ++ LS +++ Sbjct: 540 EHWDKLFELLYAFVGE-SGEAGNDNGQAVCRLRSDTPPKGWDDVLTIENNVHTELSRVVK 598 Query: 601 RGDKMLXXXXXXXXXXXXXXLVTDIGGLFKDLASIREQVRFFMNLNDENIVYWMEGSGNY 660 DKM L+TD+ G+ +DL +++ +R F+ + + VYW+E S Y Sbjct: 599 TVDKMATDIKDRLDDQSIQGLITDLNGVVRDLTRVKDDLRTFLKMEQNSEVYWIEASTTY 658 Query: 661 RGKSLQLYAVPVDVSAQLKDLFFDKKKSIVLTSATLSVDKSFQFMIDNLGLGESAEQGRL 720 R +S+ LYAVPVDVS QL+ FFD K SI+LTSATLSV KSFQ+ + LGL E RL Sbjct: 659 RYRSVHLYAVPVDVSKQLQQYFFDVKDSIILTSATLSVHKSFQYAEEQLGLEGFEENNRL 718 Query: 721 MTALLPSPFKYREQALLVIPRDFPSVKGSVGDARFVDKLVHSLAEAAVATQGRMLVLFTS 780 T LPSPF YREQAL++IPR+FP++KGS GD +F+ LV SLA++AV T+GRMLVLFTS Sbjct: 719 KTVQLPSPFNYREQALVIIPRNFPTLKGSAGDPQFISMLVSSLADSAVETKGRMLVLFTS 778 Query: 781 YKMLRQVYDPLKEALASQDIAVLGQGVEGGSRSKLIRRFQDSAASVLLGTSSFWEGVDIP 840 Y+ML+QVY+PLKEAL I VLGQG++ G+R+KL RRF +VLLGTSSFWEGVDIP Sbjct: 779 YRMLKQVYEPLKEALMGSGIQVLGQGIDSGNRTKLTRRFTQQPETVLLGTSSFWEGVDIP 838 Query: 841 GEALTCLAIVRLPFQPPNHPXXXXXXXXXXXXXXNPFMKLSVPQAVIRFKQGFGRLVRTA 900 GEALTCLAIVRLPFQPPNHP NPFMKLS+PQAVIRFKQGFGRLVRTA Sbjct: 839 GEALTCLAIVRLPFQPPNHPLVEAKSELLQKQKQNPFMKLSIPQAVIRFKQGFGRLVRTA 898 Query: 901 QDRGIVIVYDTRVIESYYGKYFLYSLPGPKMEHMLTDQMVPRIAEWLE 948 +D+GIVI+YDTRVI++YYGK+FLYSLPGPK+E M DQMVPR+ EWL+ Sbjct: 899 KDKGIVIIYDTRVIDTYYGKHFLYSLPGPKIETMHIDQMVPRMREWLQ 946 >C0ZCH4.1 C0ZCH4_BREBN Probable ATP-dependent helicase Length = 967 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/983 (39%), Positives = 547/983 (55%), Gaps = 51/983 (5%) Query: 2 KFAVLDFETTGT--QSVGEIIQVGLAIIEEDRSISRVYGSYVKPGTPIPPFITGLTGITD 59 + V+DFETTG+ + IIQ+G A+ +D I+ + + + PG IPPFIT LTGIT+ Sbjct: 3 RLLVVDFETTGSHPRQGDSIIQIG-AVAIDDGQITESFSTLIHPGQDIPPFITQLTGITN 61 Query: 60 SDVQDAXXXXXXXXXXXXXXXXXXXXGHNVAFDFHFLQNALDRCGYLPFQGRILDTIDFL 119 V DA HN +FD FLQ AL GY F G +LDT++ Sbjct: 62 EMVADAPSLEEVFPDFLRLLDGRAFVAHNASFDLQFLQEALLSQGYYAFDGYVLDTVELS 121 Query: 120 KICFPSLTTYQLGAVSAHFGLTHERPHQADSDALATALVLLKCLEELYSLPLLTIQRLNE 179 ++ P +Y+LG +++ + H+ PHQADSDALATA + L L+ L LPL+TIQRL Sbjct: 122 RVLLPMQNSYRLGELASELEIEHDNPHQADSDALATAQLFLHLLDILKKLPLVTIQRLQM 181 Query: 180 LFADEDSDLAWYFDGLLHEREMETFQPEGELN-------------FYRQLALAVGDWTEL 226 L + SD+ + LL + EME EL+ YRQLAL Sbjct: 182 LVSSFRSDI----EVLLRQIEMEKLIELPELDGTPTKTDSSDMWDIYRQLALR------- 230 Query: 227 MPPREE----GTGNPAQNIT----FEEYMEEVTLR---LKETLPQYESREAQEIMIHEVI 275 REE +P ++T F E +E+V ++ + Y+ R+AQE M+H V Sbjct: 231 --KREEKLTASLKHPPVDVTVTKAFAEQLEDVLGENGYMQAKMSGYQRRDAQEAMMHAVY 288 Query: 276 TALESDKHLLIEAGTGTGKSLGYLLPAIYHSVRSGQKVMVSTHTINLQDQLRERDIPLLT 335 A+E HLL+EAGTGTGKSL YLLP I + + Q+++VST+TI LQ+QL ++I L Sbjct: 289 EAMEDGVHLLVEAGTGTGKSLAYLLPGIIWAHHNQQQLVVSTNTIQLQEQLFHKEIATLQ 348 Query: 336 NVVPFPFKAAVFKGRGHYLCLRKFEHKINKKDFASPREEALTAAQMIVWLTQTQSGDDEE 395 +PF F A+ KGRG+YLCLRKFE +++ S +E L QM+ WLTQT +GD EE Sbjct: 349 ESLPFSFTASTLKGRGNYLCLRKFEQAVDEPVEGSSQEMRLVKGQMLTWLTQTVTGDVEE 408 Query: 396 LNLNGRGGDFWETVASDTDSCLGRSCPWFRKCYYHRAKHEAGIADVVVTNHSKLFADVKA 455 L++ G W+ V SDT SCL R+CPWF +CYY +AK A DV++ NH+ +D++A Sbjct: 409 LSMPPSGQLLWQQVKSDTGSCLNRACPWFSRCYYFQAKERARDVDVLIVNHALFISDLQA 468 Query: 456 GHQLLPAYEHLVIDEAHHLEDIAGKHLGMQMKYFTVAHTLTRLYKDS--KSGQLPVLRQT 513 +++LPAYE ++DEAHHLED A +HLG Q F+ L L + S +SG + + Sbjct: 469 ENRILPAYEVAIVDEAHHLEDAATQHLGKQ---FSTTQLLFLLDRASVEESGSIARFAEE 525 Query: 514 LQSSGNEQAAEWSGVIDRIYPDLLTVRESWDALSDKLFALLPERSDAAAGEAGQLVTRLL 573 LQS E + + T+RE + L+A +R++ +AG+ R Sbjct: 526 LQSWMPAVQEEVVAKLLELRKQSATLREKAQQWTQLLYAWASDRAEETT-DAGRETVRYR 584 Query: 574 PGAQPKGWEEITALENTLNLSLSEIIRRGDKMLXXX-XXXXXXXXXXXLVTDIGGLFKDL 632 + E+I + L ++ +++L L+TD+ GL KD Sbjct: 585 IESFVGKHEKIRKVTKKLIEGMTAYAAGIEQLLRTTPQEEKPPFAVRSLLTDLFGLIKDW 644 Query: 633 ASIREQVRFFMNLNDENIVYWMEGSGNYRGKSLQLYAVPVDVSAQLKDLFFDKKKSIVLT 692 + E + FF+ D VYWME K + L A + V+ L + F +K+S++LT Sbjct: 645 QNTVELLHFFLLEQDAEYVYWMEVESRTARKQVHLSAALLKVADSLAEPLFAQKRSLILT 704 Query: 693 SATLSVDKSFQFMIDNLGLGESAEQGRLMTALLPSPFKYREQALLVIPRDFPSVKGSVGD 752 SATL+V SF ++ GL + E+ R+ T LPSPF Y EQ LL+IP DFP+ G D Sbjct: 705 SATLTVKNSFSYIKSQFGLDQLPEE-RVRTLSLPSPFHYEEQGLLLIPSDFPA-PGKESD 762 Query: 753 ARFVDKLVHSLAEAAVATQGRMLVLFTSYKMLRQVYDPLKEALAS--QDIAVLGQGVEGG 810 +++ ++ + +A++GR L+LFTS+ MLR VY +KE LA + + G G++ Sbjct: 763 HTYLEAVIQGCVDVVLASKGRTLILFTSHSMLRLVYQAMKERLAEAPEPYTLFGHGIDSN 822 Query: 811 SRSKLIRRFQDSAASVLLGTSSFWEGVDIPGEALTCLAIVRLPFQPPNHPXXXXXXXXXX 870 +RSKL+R F+ SVLLGTSSFWEGVDI GE L+ L IVRLPF PPNHP Sbjct: 823 NRSKLVRLFRSMERSVLLGTSSFWEGVDIQGEWLSSLVIVRLPFAPPNHPVYQGRAELLK 882 Query: 871 XXXXNPFMKLSVPQAVIRFKQGFGRLVRTAQDRGIVIVYDTRVIESYYGKYFLYSLPGPK 930 N FM LS+PQAV++FKQG GRL+R DRG+VIV DTRV+E+ YG+ FL SLP + Sbjct: 883 AEGKNAFMSLSLPQAVLQFKQGVGRLIRHHLDRGVVIVLDTRVVEARYGRSFLQSLPPFQ 942 Query: 931 MEHMLTDQMVPRIAEWLEDGSVS 953 +E + RI +L S+S Sbjct: 943 IESGPWPTLRERIEPFLSMQSLS 965 >Q9KC83.1 Q9KC83_BACHD ATP-dependent DNA helicase Length = 942 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 359/955 (37%), Positives = 526/955 (55%), Gaps = 25/955 (2%) Query: 2 KFAVLDFETTGTQSVGE---IIQVGLAIIEEDRSISRVYGSYVKPGTPIPPFITGLTGIT 58 +F V+D ETTG QSV + II++G +IE++ ++ + + V P IPPFI LTGI+ Sbjct: 4 RFVVIDIETTG-QSVAQGDRIIEIGAVVIEDEEAVES-FCTLVNPERSIPPFIEELTGIS 61 Query: 59 DSDVQDAXXXXXXXXXXXXXXXXXXXXGHNVAFDFHFLQNALDRCGYLPFQGRILDTIDF 118 D V+ A HNV FD FLQ L+ GY P I+DT++ Sbjct: 62 DEMVKGAPTFHQCIPELMSMLEGGVFVAHNVHFDLSFLQKLLEHEGYGPLLVPIIDTVEL 121 Query: 119 LKICFPSLTTYQLGAVSAHFGLTHERPHQADSDALATALVLLKCLEELYSLPLLTIQRLN 178 +I P+ +Y+L A++ GL HE PH+ADSDA TA +LL L++L LPL+T+Q+L Sbjct: 122 SRILLPTEESYKLSALTEQLGLEHENPHRADSDAKVTADLLLLLLQKLRQLPLMTLQQLE 181 Query: 179 ELFADEDSDLAWYFDGLLHEREMETFQPEGELNFYRQLALAVGDWTELMPPREEGTGNPA 238 L SD+ L+ ++ + + E + YRQLA+ M P+EE Sbjct: 182 LLSDSWISDMGPILRQLIEKKMHDHAREEEVFDIYRQLAIRK---PVKMKPQEEEIITTT 238 Query: 239 QNITFEEYMEEVTLR---LKETLPQYESREAQEIMIHEVITALESDKHLLIEAGTGTGKS 295 TF+ + + +T L + YE R+ Q M+ V A +++H+LIEAGTGTGKS Sbjct: 239 D--TFQSFKDRITQEGGSLSKAFLTYEWRQGQLKMMEVVHEAFSNNEHVLIEAGTGTGKS 296 Query: 296 LGYLLPAIYHSVRSGQKVMVSTHTINLQDQLRERDIPLLTNVVPFPFKAAVFKGRGHYLC 355 L YLLPA Y + V++ST TI LQ QL ERDIPLL ++PFP A+ KGR HYL Sbjct: 297 LAYLLPAAYFAHMEKAPVVISTQTIPLQSQLLERDIPLLQKILPFPINVALLKGRNHYLS 356 Query: 356 LRKFEHKINKKDFASPREEALTAAQMIVWLTQTQSGDDEELNLNGRGGDFWETVASDTDS 415 L KFE + + + L A ++VWLT+T+ GD EELNL G FW TV SD S Sbjct: 357 LWKFEQALARGCEQDSYDTILAKAAILVWLTETERGDREELNLPTGPGSFWATVESDGVS 416 Query: 416 CLGRSCPWFRKCYYHRAKHEAGIADVVVTNHSKLFADVKAGHQLLPAYEHLVIDEAHHLE 475 LG+ PWF +C+Y RA+ +A AD+++TNH+ L D+ + LLP+++ VIDEAHH E Sbjct: 417 SLGKYDPWFSRCFYQRARTQAAKADLIITNHALLCTDMVQKNGLLPSFKQAVIDEAHHFE 476 Query: 476 DIAGKHLGMQMKYFTVAHTLTRLYKDSKSGQLPVLRQTLQSSGNEQAAEWSGVIDRIYPD 535 ++A HLG Q Y+++ + + RL K G +L + Q + E + + +++ Sbjct: 477 EVASDHLGKQTDYYSLYYFIQRLGYGDKEG---LLDRMFQLAAKED-VKLTVDEEKVKTI 532 Query: 536 LLTVRESWDALSDKLFALLPERSDAAAGEAGQLVTRLLP-GAQPKGWEEITALENTLNLS 594 L + D L L + + ++ + G+L R Q WE I ++L Sbjct: 533 LQECQLELDELFRMLHRYVLQNRSSSKSDVGRLSYRYESFREQGTLWEAILESGMRVHLM 592 Query: 595 LSEIIRRGDKMLXXXXXXXXXXX--XXXLVTDIGGLFKDLASIREQVRFFMNLNDENIVY 652 + E I++ +L L+TD G+ L + + +D N VY Sbjct: 593 MKEGIKKLQLVLTCFHDVYDQLSFFDQGLLTDAKGVIDRLQEEENNLYELLLESDPNAVY 652 Query: 653 WMEGSGNYRGKSLQLYAVPVDVSAQLKDLFFDKKKSIVLTSATLSVDKSFQFMIDNLGLG 712 W+E + LY+ P++V L D FF KKS+VLTSATLS+ SF + ++ LGL Sbjct: 653 WIEIEPRGAKNATFLYSRPIEVGESLADRFFATKKSVVLTSATLSIKGSFDYQMERLGLH 712 Query: 713 ESAEQGRLMTALLPSPFKYREQALLVIPRDFPSVKGSVGDARFVDKLVHSLAEAAVATQG 772 + + T +PSPF Y+EQA L++P D P++K V + + ++ + A + G Sbjct: 713 DFG----VRTESIPSPFSYKEQARLLLPTDIPAIK-DVSEEEYAQEVAIKIWRIADCSSG 767 Query: 773 RMLVLFTSYKMLRQVYDPLKEALASQDIAVLGQGVEGGSRSKLIRRFQDSAASVLLGTSS 832 R+LVLFTSY+ML+QVY +K+ +A++GQG+ GSR+KL++ F+ ++L GTSS Sbjct: 768 RILVLFTSYEMLKQVYQYVKDLSMDDSLALIGQGITSGSRAKLMKAFKLHEKAILFGTSS 827 Query: 833 FWEGVDIPGEALTCLAIVRLPFQPPNHPXXXXXXXXXXXXXXNPFMKLSVPQAVIRFKQG 892 FWEG+D+PG L CL IVRLPF PP+ P NPF +S+PQA+IRFKQG Sbjct: 828 FWEGIDLPGNELRCLVIVRLPFAPPDQPLLKAKLDKAEEEGKNPFRHISLPQAIIRFKQG 887 Query: 893 FGRLVRTAQDRGIVIVYDTRVIESYYGKYFLYSLPGPKMEHMLTDQMVPRIAEWL 947 FGRL+RT+QD+G V V D R+ + YG+ FL SLP + + ++ EW+ Sbjct: 888 FGRLIRTSQDKGSVFVLDKRIATTRYGRAFLESLPDVPVYKGTLESLIEAHKEWM 942 >C2W664.1 C2W664_BACCE DnaQ family exonuclease/DinG family helicase Length = 930 Score = 588 bits (1516), Expect = e-166, Method: Compositional matrix adjust. Identities = 346/934 (37%), Positives = 511/934 (54%), Gaps = 33/934 (3%) Query: 2 KFAVLDFETTGTQ---SVGEIIQVGLAIIEEDRSISRVYGSYVKPGTPIPPFITGLTGIT 58 ++ V+D ETTG +I QV A++ ED I ++ S+V P IPPFIT LTGI Sbjct: 4 RYVVVDLETTGNSWKDGKDKITQVA-AVVVEDGEILEIFSSFVNPEREIPPFITELTGID 62 Query: 59 DSDVQDAXXXXXXXXXXXXXXXXXXXXGHNVAFDFHFLQNALDRCGYLPFQGRILDTIDF 118 + V+ A HNV FD++FL+ L + GY + +DT++ Sbjct: 63 EDLVKQAPLFCDVAPMIVELLQGAYFVAHNVHFDWNFLREELKQAGYGEVNCQKIDTVEL 122 Query: 119 LKICFPSLTTYQLGAVSAHFGLTHERPHQADSDALATALVLLKCLEELYSLPLLTIQRLN 178 +I P+ +Y+L ++ L H++PH+ADSDAL TA + L+ L +L LPL+T+Q L Sbjct: 123 AQILLPTADSYKLRDLAKQHELEHDQPHRADSDALVTAELFLQFLNQLEQLPLVTLQSLY 182 Query: 179 ELFADEDSDLAWYFDGLLHEREMETFQPEGELNFYRQLALAVGDWTELMPPREEGTGNPA 238 EL SD+A + + M + E YR +AL ++ E G + Sbjct: 183 ELSDVFQSDIANIISENILNKVMLGTECAKEYEIYRNIALRKRKYS-----LEIGEDCSS 237 Query: 239 QNITFEEYMEEVTLRLKETLPQYESREAQEIMIHEVITALESDKHLLIEAGTGTGKSLGY 298 + F+ ++ + +L+ +P +E RE+Q+ M+ EV TAL + LIEAGTGTGK+L Y Sbjct: 238 K---FDAFLNKSMEQLELQMPTFEKRESQQRMMKEVYTALRDSRFSLIEAGTGTGKTLAY 294 Query: 299 LLPAIYHSVRSGQKVMVSTHTINLQDQLRERDIPLLTNVVPFPFKAAVFKGRGHYLCLRK 358 LLP+IY + + + V++ST T+ LQ Q+ E++IPLL N++PFPF+ A+ KGR HYLCL K Sbjct: 295 LLPSIYFAKKKEETVVISTQTVQLQQQMIEKEIPLLQNILPFPFEVALLKGRKHYLCLHK 354 Query: 359 FEHKINKKDFASPREEALTAAQMIVWLTQTQSGDDEELNLNGRGGDFWETVASDTDSCLG 418 FE+ + +++ + ALT A+++VWL QT++GD +ELN+ G W+ + SDT S + Sbjct: 355 FEYALQEEE--KNYDAALTKAKILVWLLQTETGDRDELNIPEGGKLLWDRICSDTYSPVT 412 Query: 419 RSCPWFRKCYYHRAKHEAGIADVVVTNHSKLFADVKAGHQLLPAYEHLVIDEAHHLEDIA 478 WF +C+Y RAK++A AD+V+TNH+ LF D + LL + EH++ DEAHH+E+ A Sbjct: 413 MQSNWFSRCFYQRAKNKALFADIVITNHALLFQDFISEDPLLASCEHIIFDEAHHIEETA 472 Query: 479 GKHLGMQMKYFTVAHTLTRLYKDSKSGQLPVLRQTLQSSGNEQAAEWSGVIDRIYPDLLT 538 + LG Q L+R L + + ++ + + + V R L Sbjct: 473 TRILGEQFSCMYFQLILSRFGTLETDDMLSKVYEMMKKTQQSSRSTFRMVSHR----LKE 528 Query: 539 VRESWDALSDKLFALLPERSDAAAGEAGQ-LVTRLLPGAQP-KGWEEITALENTLNLSLS 596 ++ D L + +++ G L+ R G + K W I L N L Sbjct: 529 IKFDADELFQMFRTFIFQQTKQEKGANNMPLIYRYDAGQEDGKLWRSIAELTNRFVYELR 588 Query: 597 EIIRRGDKMLXXXXXXXXXXXXXXLVTDIGGLFKDLASI-REQVR--FFMNLNDENIVYW 653 +I+ +K I G F L + R+ V + L V W Sbjct: 589 KILIVLEKQAEVLHSKVEWETQV-----ITGEFMHLIELLRKMVDSLHMLILEKTTCVTW 643 Query: 654 MEGSGNYRGKSLQLYAVPVDVSAQLKDLFFDKKKSIVLTSATLSVDKSFQFMIDNLGLGE 713 ME S LYA PV + + D F KK+S++ TSATL+V+ +F +M + LGL + Sbjct: 644 METETKGTIHSTVLYAQPVHIGERFADDFLAKKRSVIFTSATLTVNDTFDYMKEQLGLYD 703 Query: 714 SAEQGRLMTALLPSPFKYREQALLVIPRDFPSVKGSVGDARFVDKLVHSLAEAAVATQGR 773 A T +PSPF Y EQ L++P D P +K V + ++ ++ H + + A AT GR Sbjct: 704 FAPD----TLTVPSPFHYEEQVKLMVPTDVPLIK-QVSEDVYIREISHHIKKIAKATNGR 758 Query: 774 MLVLFTSYKMLRQVYDPLKEALASQDIAVLGQGVEGGSRSKLIRRFQDSAASVLLGTSSF 833 MLVLFTSY+ML+ Y LK+A D +L Q V SRS+L+R+FQ+ S+LLGTSSF Sbjct: 759 MLVLFTSYEMLKATYTNLKQAEELDDFVLLTQSVHNRSRSRLVRKFQEFDKSILLGTSSF 818 Query: 834 WEGVDIPGEALTCLAIVRLPFQPPNHPXXXXXXXXXXXXXXNPFMKLSVPQAVIRFKQGF 893 WEG+DIPG+AL+CL IVRLPF PPN P + F KL++PQA++RFKQGF Sbjct: 819 WEGIDIPGDALSCLVIVRLPFTPPNQPMMEAKSEWIKNKGEDVFAKLALPQAILRFKQGF 878 Query: 894 GRLVRTAQDRGIVIVYDTRVIESYYGKYFLYSLP 927 GRL+RT D G V V D R+ S+YGK F+ S+P Sbjct: 879 GRLIRTMTDTGTVFVLDRRLTNSFYGKRFMQSIP 912 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 5,375,508,306 Number of extensions: 219685251 Number of successful extensions: 575511 Number of sequences better than 1.0e-05: 2083 Number of HSP's gapped: 568878 Number of HSP's successfully gapped: 3156 Length of query: 953 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 807 Effective length of database: 1,685,228,013 Effective search space: 1359979006491 Effective search space used: 1359979006491 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)