BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0543.0028.p (217 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKW4.1 B3KKW4_9BACI CoA-binding domain protein 370 e-101 B1DLZ8.1 B1DLZ8_9BACL CoA-binding domain protein 314 3e-84 C0ZCH6.1 REX_BREBN Redox-sensing transcriptional repressor rex 269 1e-70 B9KYB3.1 B9KYB3_THERP Redox-sensing transcriptional repressor rex 207 7e-52 C4CPU8.1 C4CPU8_9CHLR AT-rich DNA-binding protein 206 1e-51 >B3KKW4.1 B3KKW4_9BACI CoA-binding domain protein Length = 221 Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/212 (84%), Positives = 195/212 (91%) Query: 1 MKSDKISEAVVRRLPVYLRFLNDLQKREISTVSSQELGQKLDLNPAQIRKDLAYFGDFGR 60 MKS+KISEAVVRRLPVYLR+LN+LQKRE+STVSSQELGQKLDLNPAQIRKDLAYFGDFGR Sbjct: 1 MKSEKISEAVVRRLPVYLRYLNELQKREVSTVSSQELGQKLDLNPAQIRKDLAYFGDFGR 60 Query: 61 KGIGYDVSYLIEKIRHILKLDQQINVALVGAGNLGHALSNYNAYLKDTMKITAVFDSYPP 120 KGIGYDVSYLIEKIR ILKLDQ+INVALVGAGNLGHALSNYNA+LKD MKI A+FDSY P Sbjct: 61 KGIGYDVSYLIEKIRQILKLDQKINVALVGAGNLGHALSNYNAFLKDNMKIVAIFDSYSP 120 Query: 121 KIGQKINSLTVQPMEELGSTIREQGIRIGIITVPDSEAQNVADILVDSGIEAILNFAPVI 180 K+G KIN+L VQPMEEL T+ E GIRIGIITVPD EAQNVA+ L+ SGIEAILNFAP I Sbjct: 121 KVGMKINNLVVQPMEELEKTVHEHGIRIGIITVPDFEAQNVANQLIASGIEAILNFAPTI 180 Query: 181 LKTPANIRIHAADFTTDLQSLAYYLHDGKDEA 212 LK PA+IRIH ADFTTDLQSLAYYL +GK++A Sbjct: 181 LKAPAHIRIHTADFTTDLQSLAYYLDNGKEDA 212 >B1DLZ8.1 B1DLZ8_9BACL CoA-binding domain protein Length = 219 Score = 314 bits (805), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 155/214 (72%), Positives = 177/214 (82%) Query: 1 MKSDKISEAVVRRLPVYLRFLNDLQKREISTVSSQELGQKLDLNPAQIRKDLAYFGDFGR 60 MK KISEAVVRRLP+YL+ LN+L RE+ TVSSQELG KLDLNPAQIRKDLAYFGDFGR Sbjct: 1 MKQAKISEAVVRRLPIYLQVLNELYNREVQTVSSQELGLKLDLNPAQIRKDLAYFGDFGR 60 Query: 61 KGIGYDVSYLIEKIRHILKLDQQINVALVGAGNLGHALSNYNAYLKDTMKITAVFDSYPP 120 KGIGYDVSYLIEKI+ ILKLDQ+INVALVGAGNLGHAL NYN Y KD MKI AVFD + Sbjct: 61 KGIGYDVSYLIEKIQQILKLDQRINVALVGAGNLGHALCNYNKYSKDNMKIVAVFDDHQN 120 Query: 121 KIGQKINSLTVQPMEELGSTIREQGIRIGIITVPDSEAQNVADILVDSGIEAILNFAPVI 180 KIG IN+LT+QPM++L T++E IRIGIITVP EAQNVA+ V++GIE ILNFAP I Sbjct: 121 KIGTMINNLTIQPMDKLKETVQENNIRIGIITVPGPEAQNVANQFVEAGIEGILNFAPAI 180 Query: 181 LKTPANIRIHAADFTTDLQSLAYYLHDGKDEAED 214 L+ P +IRIH ADFT +L SLAYYL ++E E+ Sbjct: 181 LRLPDHIRIHHADFTRELLSLAYYLEKERNEQEN 214 >C0ZCH6.1 REX_BREBN Redox-sensing transcriptional repressor rex Length = 207 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 128/204 (62%), Positives = 164/204 (80%) Query: 2 KSDKISEAVVRRLPVYLRFLNDLQKREISTVSSQELGQKLDLNPAQIRKDLAYFGDFGRK 61 K +KISEAVVRRLP+YLR+L+ LQ+ E++TVSSQ++G+ LD+NPAQIRKDLA FGDFG+K Sbjct: 3 KHEKISEAVVRRLPIYLRYLSYLQQVEVTTVSSQQMGKNLDVNPAQIRKDLAAFGDFGKK 62 Query: 62 GIGYDVSYLIEKIRHILKLDQQINVALVGAGNLGHALSNYNAYLKDTMKITAVFDSYPPK 121 GIGYDV YL+EKIR ILKL +I VALVGAG+LGHA+SNYNAYLKD M+I A+FD+ P K Sbjct: 63 GIGYDVDYLVEKIREILKLTDEIRVALVGAGHLGHAISNYNAYLKDNMRIAAIFDNNPEK 122 Query: 122 IGQKINSLTVQPMEELGSTIREQGIRIGIITVPDSEAQNVADILVDSGIEAILNFAPVIL 181 G+K+ + +QP+ EL TI + I++ IITVP AQ+V D L +GI+ ILNFAP + Sbjct: 123 QGKKVAGIPIQPLSELEETIVNKQIKLAIITVPAPAAQSVCDQLTQAGIKGILNFAPTTI 182 Query: 182 KTPANIRIHAADFTTDLQSLAYYL 205 + ++RIH AD T++LQSLAYYL Sbjct: 183 RAGKDVRIHYADVTSNLQSLAYYL 206 >B9KYB3.1 B9KYB3_THERP Redox-sensing transcriptional repressor rex Length = 237 Score = 207 bits (526), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 105/219 (47%), Positives = 142/219 (64%), Gaps = 3/219 (1%) Query: 1 MKSDKISEAVVRRLPVYLRFLNDLQKREISTVSSQELGQKLDLNPAQIRKDLAYFGDFGR 60 M++ + + VVRRLP+YLR L LQ+ T+SS+EL Q L + AQIR+DL+YFG FG+ Sbjct: 1 MRNGPVPDIVVRRLPLYLRTLRQLQREGHRTISSEELAQLLGVTAAQIRRDLSYFGRFGK 60 Query: 61 KGIGYDVSYLIEKIRHILKLDQQINVALVGAGNLGHALSNYNAYLKDTMKITAVFDSYPP 120 +G GY V+ LI ++ IL LD+ NVALVG G LG A+++Y + + +ITA+F P Sbjct: 61 QGYGYAVAALIHELEVILHLDRLWNVALVGYGKLGQAIAHYGEFEPNGFRITAIFAKSPE 120 Query: 121 KIGQKINSLTVQPMEELGSTIREQGIRIGIITVPDSEAQNVADILVDSGIEAILNFAPVI 180 IGQ +N + V P E+ +REQGIRIGII VP AQ VAD LV G+ AILN+AP + Sbjct: 121 HIGQIVNGIVVLPETEIDRVVREQGIRIGIIAVPPDAAQEVADKLVAGGVRAILNYAPTV 180 Query: 181 LKTPANIRIHAADFTTDLQSLAYYLHDGKDEA---EDEQ 216 L P I + D + LQS+ +YLHD D + +DEQ Sbjct: 181 LHVPPGITVREIDPISALQSMTFYLHDRHDASGNGQDEQ 219 >C4CPU8.1 C4CPU8_9CHLR AT-rich DNA-binding protein Length = 230 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 99/215 (46%), Positives = 144/215 (66%), Gaps = 6/215 (2%) Query: 1 MKSDKISEAVVRRLPVYLRFLNDLQKREISTVSSQELGQKLDLNPAQIRKDLAYFGDFGR 60 M+ I + V+RRLP+Y R L + ++++SS+ELG+++ + AQIR+DL+YFG FG+ Sbjct: 1 MRRGGIPDIVIRRLPIYERTLKQMLSAGVTSISSEELGERIGVTAAQIRRDLSYFGKFGK 60 Query: 61 KGIGYDVSYLIEKIRHILKLDQQINVALVGAGNLGHALSNYNAYLKDTMKITAVFDSYPP 120 +G GYDV+ L E+I HILKLD+Q +VAL G G+LG A+++Y + + +I A+F P Sbjct: 61 QGKGYDVARLAEEIAHILKLDRQWDVALAGFGHLGQAIAHYRGFEPNAFRIAAIFARNPE 120 Query: 121 KIGQKINSLTVQPMEELGSTIREQGIRIGIITVPDSEAQNVADILVDSGIEAILNFAPVI 180 IGQ++N V EL IRE GI+IGI+ VP + AQ+VAD ++ G+ AILN+APVI Sbjct: 121 HIGQQVNGTVVLDEAELTPVIREMGIKIGIVAVPAAAAQDVADRMIAGGVRAILNYAPVI 180 Query: 181 LKTPANIRIHAADFTTDLQSLAYYL------HDGK 209 LK P ++ + D + LQSL YYL HDG+ Sbjct: 181 LKVPESVWVREIDPVSALQSLTYYLDNGDPSHDGR 215 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,239,182,026 Number of extensions: 50853019 Number of successful extensions: 153651 Number of sequences better than 1.0e-05: 536 Number of HSP's gapped: 153420 Number of HSP's successfully gapped: 536 Length of query: 217 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 87 Effective length of database: 1,835,964,253 Effective search space: 159728890011 Effective search space used: 159728890011 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)