BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0543.0026.p
         (172 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A9U6Z2.1 A9U6Z2_PHYPA Predicted protein (Fragment)                    172   8e-42
B3KKW6.1 B3KKW6_9BACI Putative uncharacterized protein                134   3e-30
B1DLA1.1 B1DLA1_9BACL Putative uncharacterized protein                 80   9e-14

>A9U6Z2.1 A9U6Z2_PHYPA Predicted protein (Fragment)
          Length = 141

 Score =  172 bits (437), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 102/141 (72%)

Query: 32  DQWSERSAATEIAEARAGLTEVTRAQKSVWDENSIYWVMTGRNAAGTELMVWVRFTRDGK 91
           DQWSE+  A   A+  AG+  V  AQKSVWD+NSIYWV+ G N  G E+MVWV+FT  GK
Sbjct: 1   DQWSEKDTAIAKAKQEAGIVSVADAQKSVWDQNSIYWVVEGTNKTGQEVMVWVQFTDQGK 60

Query: 92  PAGGDNGVYAEEVAKGMSEQKIRSIIASDLPGSTIKRLLPGVYNGEYVWQLFYKLEGRYY 151
           P  G N V+ E ++ GMS++K+++ I S +PG    RL+PGVYNGEYVWQLFYK++  YY
Sbjct: 61  PKEGQNTVHQEILSSGMSKEKMKAKIKSSIPGIKDMRLVPGVYNGEYVWQLFYKVKDHYY 120

Query: 152 YKFYRFADGNAIGDGYSLPKK 172
           Y+FYRF+DG  IG  ++LP +
Sbjct: 121 YQFYRFSDGAEIGSPFTLPNR 141


>B3KKW6.1 B3KKW6_9BACI Putative uncharacterized protein
          Length = 172

 Score =  134 bits (338), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 99/172 (57%)

Query: 1   LKKRRKWXXXXXXXXXXXXXXXSQFYAYVMKDQWSERSAATEIAEARAGLTEVTRAQKSV 60
           +KK+ KW                 +Y+YVMKD W+E   A   A+    L    +  KSV
Sbjct: 1   MKKKTKWILLSVSGVLLLLLGLQLYYSYVMKDTWNEERMAILAAKQHGQLVSSDKTYKSV 60

Query: 61  WDENSIYWVMTGRNAAGTELMVWVRFTRDGKPAGGDNGVYAEEVAKGMSEQKIRSIIASD 120
           W E++ YWV++G++      MVWV+FT D  P  G + V +  +  GMSE  +R  I ++
Sbjct: 61  WGEDNNYWVVSGKDKDNQVRMVWVKFTDDNVPVEGADAVQSVLLNTGMSEAVMRDQIRNE 120

Query: 121 LPGSTIKRLLPGVYNGEYVWQLFYKLEGRYYYKFYRFADGNAIGDGYSLPKK 172
           +PG+ IKRLLPG+Y GEY WQL Y+  G+  Y+FYRF DGNAIG+   LP +
Sbjct: 121 MPGAVIKRLLPGMYEGEYAWQLQYENNGQRGYRFYRFQDGNAIGNDIILPNQ 172


>B1DLA1.1 B1DLA1_9BACL Putative uncharacterized protein
          Length = 177

 Score = 79.7 bits (195), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 14/151 (9%)

Query: 25  FYAYVMKDQWSERSAATEIAEARAGLTEVTRAQKSVWDENSIYWVMTGRNAAGTELMVWV 84
           +Y  + +  W+  +   + A+  AGLTEV+   K VWD  S  W++ G N A  E+ VW+
Sbjct: 35  YYNTIQQPFWNSENPIRKEAKEAAGLTEVSSITKQVWDTTS--WIVKGENDANEEIYVWL 92

Query: 85  RFTRDGKPAGGDNGVYAEEVAKGMSEQKIRSIIASDLPGSTIKRLLPGVYNGEYVWQLFY 144
                    G D  V   + ++ +    I+  +    P + IKR+ PG  NG+ VW++FY
Sbjct: 93  --------IGPDKTVQTVKASEAIDTAAIKQAVLQKKPDAAIKRIQPGTLNGQLVWEVFY 144

Query: 145 KL---EGRYYYKFYRFADGNAIGDGYSLPKK 172
                  +Y Y FY F  G  + + Y LP K
Sbjct: 145 SQGSNPEKYSYDFYDFRSGTYVTE-YHLPAK 174


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,010,128,872
Number of extensions: 39788029
Number of successful extensions: 80056
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 80088
Number of HSP's successfully gapped: 5
Length of query: 172
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 46
Effective length of database: 1,873,648,313
Effective search space: 86187822398
Effective search space used: 86187822398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)