BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0543.0025.p
         (136 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKW7.1 B3KKW7_9BACI Putative uncharacterized protein                146   7e-34
A9U7S4.1 A9U7S4_PHYPA Predicted protein (Fragment)                    130   4e-29
B1DLA0.1 B1DLA0_9BACL Putative uncharacterized protein                 97   4e-19

>B3KKW7.1 B3KKW7_9BACI Putative uncharacterized protein
          Length = 177

 Score =  146 bits (368), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 96/136 (70%), Gaps = 3/136 (2%)

Query: 1   VNDSHISIKRNEVTLKLDLQPGTKLRELVQYVNTEGRSAIDGRTLKLDVEQHSSELLDEY 60
           V  SHI IK++ VTL LDL P   L+ LVQ++  EG+S I  R L++ VE HSSE LD++
Sbjct: 45  VKSSHIDIKQDTVTLNLDLAPDANLQGLVQHIKQEGKSVIGKRELRIQVEDHSSEALDQW 104

Query: 61  WDQAMFSVAEAMESRKYTLIPAKLDELKAQNSKYSSVTAATEIDDNNVYVSLSDGKKSKF 120
           W+QAM SVAEAM++++YT I + L++L AQ+    ++ A   IDD NVYVSLSDGK  KF
Sbjct: 105 WEQAMLSVAEAMDNKQYTDIQSSLEQLAAQS---PNLKAKATIDDTNVYVSLSDGKSGKF 161

Query: 121 MILPRAAATMGVWNNA 136
           +ILPR    M VWN+A
Sbjct: 162 IILPRQPGKMEVWNHA 177


>A9U7S4.1 A9U7S4_PHYPA Predicted protein (Fragment)
          Length = 118

 Score =  130 bits (327), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 84/121 (69%), Gaps = 4/121 (3%)

Query: 13  VTLKLDLQPGTKLRELVQYVNTEGRSAIDGRTLKLDVEQHSSELLDEYWDQAMFSVAEAM 72
           V LKLDL+P   L +L   ++TEG+S +  RTLK D   HSS+ L++YWD+AMFSVAEAM
Sbjct: 1   VDLKLDLKPNVNLADLADKISTEGKSVVGTRTLKFDFVDHSSDKLNQYWDKAMFSVAEAM 60

Query: 73  ESRKYTLIPAKLDELKAQNSKYSSVTAATEIDDNNVYVSLSDGKKSKFMILPRAAATMGV 132
           E+++YT IP KL +L    +K + +    E+D  NVY++L+DG  SKF++LPR    MGV
Sbjct: 61  ENKRYTEIPVKLQDL----AKGTGIQTKAEMDTKNVYITLTDGSSSKFLVLPRDPGKMGV 116

Query: 133 W 133
           W
Sbjct: 117 W 117


>B1DLA0.1 B1DLA0_9BACL Putative uncharacterized protein
          Length = 179

 Score = 97.1 bits (240), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 83/131 (63%), Gaps = 4/131 (3%)

Query: 7   SIKRNEVTLKLDLQPGTKLRELVQYVNTEGRSAIDGRTLKLDV-EQHSSELLDEYWDQAM 65
           +I +N V++++ L+P   L+++ + ++ EG+ AI  R L LD+  Q  S+ L++ W   +
Sbjct: 52  TIDQNRVSVQVTLKPDANLKDVYESISKEGKEAIGSRELSLDITNQAPSDQLEKVWSSVL 111

Query: 66  FSVAEAMESRKYTLIPAKLDELKAQNSKYSSVTAATEIDDNNVYVSLSDGKKSKFMILPR 125
           F+VAEAME + Y+ IP   + L+   + ++ V   T +DDNNVY++L DG  +K+++LPR
Sbjct: 112 FNVAEAMEKKNYSEIP---NALQKATAGHAGVQYETALDDNNVYITLKDGNSTKYVVLPR 168

Query: 126 AAATMGVWNNA 136
             A + V  NA
Sbjct: 169 TPAMLEVSANA 179


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.126    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 722,712,328
Number of extensions: 24605557
Number of successful extensions: 59118
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 59118
Number of HSP's successfully gapped: 3
Length of query: 136
Length of database: 3,060,696,203
Length adjustment: 100
Effective length of query: 36
Effective length of database: 2,118,594,703
Effective search space: 76269409308
Effective search space used: 76269409308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)