BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0543.0012.p
         (152 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K3T3.1 B3K3T3_9BACI Putative uncharacterized protein                 58   3e-07

>B3K3T3.1 B3K3T3_9BACI Putative uncharacterized protein
          Length = 158

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 81/164 (49%), Gaps = 18/164 (10%)

Query: 1   MGIQFLDMRISQD---SAADQPGVSLSSSSFPYIFGDIGLQT-GGIAPGNASLVRVTLNA 56
           M IQ LDMR+S      A+D   + +S    P + GDIGLQT   +   N + VRV L+ 
Sbjct: 1   MPIQLLDMRLSVHMPMRASDSEPIDISE---PLLIGDIGLQTIPALGTVNVTDVRVWLSG 57

Query: 57  YARLTMAISSNPAIVPDVTFTIFRNSAQI---FTTVYQKPASQAMTELTYEM--AGITAV 111
              L +  ++  A    +T  I R+ +      T +Y++        L++ M    +T  
Sbjct: 58  TVSL-LRPATTEAAPSSMTLLIERDGSGTPGSGTIIYEQVVDPG--NLSFNMFPISLTTG 114

Query: 112 DFPPAADVLAGQIRY---IISVTTNYGVTLGARSFSGIAVAGNG 152
           DFPP A V  G IRY   I+S   N  +  G  SFSGIAVAG+G
Sbjct: 115 DFPPTAVVNQGLIRYTLYIVSAGENSLLLSGPVSFSGIAVAGSG 158


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 795,742,844
Number of extensions: 27593796
Number of successful extensions: 67474
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 67473
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 3,060,696,203
Length adjustment: 114
Effective length of query: 38
Effective length of database: 1,986,700,493
Effective search space: 75494618734
Effective search space used: 75494618734
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)