BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0543.0009.p
         (223 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K708.1 B3K708_9BACI N-acetylmuramoyl-L-alanine amidase EC=3.5....   120   8e-26
B3K710.1 B3K710_9BACI N-acetylmuramoyl-L-alanine amidase EC=3.5....   119   2e-25
Q9LCR3.1 Q9LCR3_PAEPO CwlV                                            114   5e-24
Q9LCR4.1 Q9LCR4_PAEPO CwlU                                            102   2e-20
Q67M54.1 Q67M54_SYMTH Conserved domain protein                         85   4e-15

>B3K708.1 B3K708_9BACI N-acetylmuramoyl-L-alanine amidase EC=3.5.1.28
          Length = 461

 Score =  120 bits (301), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 78/112 (69%)

Query: 24  RIVMDNRELEIPKGITLENVNGSVMIPIRVVVENLGFEVLWEQKSRKVTVQQDGKSVQLA 83
           RI +D +++ +  G+ +EN NG+VM+PIRV+ ENLGF V W + ++ VTV+   + V + 
Sbjct: 29  RIYLDGQQINLSSGVKVENNNGTVMVPIRVISENLGFNVNWNKAAKTVTVEDAWQKVTMV 88

Query: 84  VGSKTADADGVTLALNAAPKQTGGTVLVPIRFVSEQFGLKVGWDNSDKTVYL 135
           +GS+ AD +G  + +  AP   GGT LVPIRFVSEQ GL+V WDN+ K VYL
Sbjct: 89  IGSQYADINGQRVLMTKAPVLRGGTTLVPIRFVSEQMGLQVRWDNTQKAVYL 140


>B3K710.1 B3K710_9BACI N-acetylmuramoyl-L-alanine amidase EC=3.5.1.28
          Length = 478

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 76/111 (68%)

Query: 25  IVMDNRELEIPKGITLENVNGSVMIPIRVVVENLGFEVLWEQKSRKVTVQQDGKSVQLAV 84
           I +D   L +  G+ + N+ G+VMIPIRVV ENLGF+V WE+ S+ VTV+   K+V++ V
Sbjct: 30  IFLDGEPLNLSSGVQVANMKGNVMIPIRVVSENLGFKVGWEKASQTVTVENSEKTVRMVV 89

Query: 85  GSKTADADGVTLALNAAPKQTGGTVLVPIRFVSEQFGLKVGWDNSDKTVYL 135
           GS+ A+ +G  + LN AP   G T LVP+RFVSEQ GL V WDN  K VYL
Sbjct: 90  GSQQAELNGAQVDLNLAPVLNGPTTLVPLRFVSEQMGLDVKWDNQSKAVYL 140


>Q9LCR3.1 Q9LCR3_PAEPO CwlV
          Length = 499

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 80/112 (71%)

Query: 24  RIVMDNRELEIPKGITLENVNGSVMIPIRVVVENLGFEVLWEQKSRKVTVQQDGKSVQLA 83
           +I +D+++L +P G   + + GS M+P+RV+ ENLG++V W+Q++R +T+++D  S+++ 
Sbjct: 29  QIYLDDQQLSVPSGAKAQVIGGSTMVPLRVISENLGYDVTWKQQARTITIEKDSTSIRMI 88

Query: 84  VGSKTADADGVTLALNAAPKQTGGTVLVPIRFVSEQFGLKVGWDNSDKTVYL 135
           +GSKTA  +G  ++L+A+P       LVP+RF+ EQ GL V WD+S K+V L
Sbjct: 89  IGSKTATVNGSDISLDASPLLRSNYALVPLRFIGEQMGLDVKWDSSSKSVKL 140


>Q9LCR4.1 Q9LCR4_PAEPO CwlU
          Length = 524

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 74/111 (66%)

Query: 25  IVMDNRELEIPKGITLENVNGSVMIPIRVVVENLGFEVLWEQKSRKVTVQQDGKSVQLAV 84
           + +D + +E P     E VNG VM+P+RVV E LG++  WE ++ K+++Q++   + + V
Sbjct: 30  LFLDGKRVEAPADAKPEMVNGKVMVPLRVVGEQLGYQFKWEPQAYKISIQKNSTDMSMYV 89

Query: 85  GSKTADADGVTLALNAAPKQTGGTVLVPIRFVSEQFGLKVGWDNSDKTVYL 135
           G  +AD +G T++L+A P   G + ++P+RFV EQ GLKV W+N +K+V L
Sbjct: 90  GRTSADVNGKTVSLDAPPVLRGSSTMIPLRFVGEQMGLKVDWNNQNKSVNL 140


>Q67M54.1 Q67M54_SYMTH Conserved domain protein
          Length = 382

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 2/112 (1%)

Query: 24  RIVMDNRELEIPKGITLENVNGSVMIPIRVVVENLGFEVLWEQKSRKVTVQQDGKSVQLA 83
           R+V+D  E++      LEN     ++PIR V E LGFEV W+Q++R  T+ +   ++QL 
Sbjct: 27  RLVVDGVEVQTDVAPVLEN--DRTLVPIRAVTEALGFEVEWDQETRTATLTKGETTIQLT 84

Query: 84  VGSKTADADGVTLALNAAPKQTGGTVLVPIRFVSEQFGLKVGWDNSDKTVYL 135
           VGS  A  +G  +AL+ AP      ++VP+RFV+E+ GL V W+   +TV +
Sbjct: 85  VGSPEAVVNGEKVALDVAPFIVSDRMMVPVRFVAEEIGLLVDWEQETRTVLI 136


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,139,013,507
Number of extensions: 42288867
Number of successful extensions: 89404
Number of sequences better than 1.0e-05: 184
Number of HSP's gapped: 89350
Number of HSP's successfully gapped: 185
Length of query: 223
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 92
Effective length of database: 1,826,543,238
Effective search space: 168041977896
Effective search space used: 168041977896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)