BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0543.0005.p
         (127 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K707.1 B3K707_9BACI Putative uncharacterized protein                160   3e-38
B3K709.1 B3K709_9BACI Putative uncharacterized protein                150   3e-35
Q9LCR2.1 Q9LCR2_PAEPO OrfW                                            137   4e-31
C0ZJZ9.1 C0ZJZ9_BREBN Putative uncharacterized protein                105   2e-21
B1DL76.1 B1DL76_9BACL Putative uncharacterized protein                 95   3e-18

>B3K707.1 B3K707_9BACI Putative uncharacterized protein
          Length = 200

 Score =  160 bits (406), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 93/122 (76%)

Query: 1   VYYTDPQQMELVSAKTDISYADAVEKYSEAYKSLQSSSNPDQVPLWGKIELKSLKFTDGQ 60
            YYTDP  MELV    +ISY +  EKY  AY++LQ S   D VPLW KIEL SLKF +G 
Sbjct: 79  AYYTDPDLMELVEGSAEISYKEDQEKYEAAYQALQKSDKADMVPLWEKIELNSLKFENGA 138

Query: 61  IIMDIHKPDEAQLGAGGEAFAISALAQTLFQFEEVKSVEVLVDGEQVESLMGHVDLEHPL 120
           + +D+  PDEA LGAGGE+FA+ A+ +T FQF+EVKS+++LVDG+Q ESLMGHVDLE+P+
Sbjct: 139 LTLDVTVPDEANLGAGGESFAVDAIKKTFFQFDEVKSLQILVDGQQTESLMGHVDLENPM 198

Query: 121 TR 122
           TR
Sbjct: 199 TR 200


>B3K709.1 B3K709_9BACI Putative uncharacterized protein
          Length = 231

 Score =  150 bits (380), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/124 (58%), Positives = 95/124 (76%), Gaps = 1/124 (0%)

Query: 1   VYYTDPQQMELVSAKTDISYADAVEKYSEAYKSLQSSSNPDQVPLWG-KIELKSLKFTDG 59
           +YYTDP+ M+L  A  +I+Y+   +KY +A++ LQ S + +  PLW  KI LKSLKF +G
Sbjct: 108 LYYTDPEIMDLKEASKEITYSGEEDKYKKAFEGLQKSGDAELNPLWSDKITLKSLKFDNG 167

Query: 60  QIIMDIHKPDEAQLGAGGEAFAISALAQTLFQFEEVKSVEVLVDGEQVESLMGHVDLEHP 119
            + +DI KP EA LGAGGE FAI AL +T FQF+EVKS+E+LVDG Q+ESLMGHV+LEHP
Sbjct: 168 ALTLDITKPAEANLGAGGEMFAIDALQKTFFQFDEVKSLELLVDGNQIESLMGHVELEHP 227

Query: 120 LTRE 123
           +TR+
Sbjct: 228 MTRK 231


>Q9LCR2.1 Q9LCR2_PAEPO OrfW
          Length = 216

 Score =  137 bits (344), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 90/123 (73%), Gaps = 1/123 (0%)

Query: 1   VYYTDPQQMELVSAKTDISYADAVEKYSEAYKSLQSSSNPDQVPLWG-KIELKSLKFTDG 59
           VYYTD Q+  L   K +I+Y   +EK+ +A+++LQ S +   VPLW  KI +  +K  +G
Sbjct: 94  VYYTDTQENGLKEQKKEITYPSELEKFQKAFEALQKSGDSALVPLWSEKITVHKIKLDNG 153

Query: 60  QIIMDIHKPDEAQLGAGGEAFAISALAQTLFQFEEVKSVEVLVDGEQVESLMGHVDLEHP 119
            +  DI  PDEA+LGAGGE  AI AL QT+FQF+EVK++++LVDG+ +ESLMGHVDLEHP
Sbjct: 154 ALTFDISLPDEARLGAGGEELAIDALKQTMFQFKEVKTLDLLVDGQSLESLMGHVDLEHP 213

Query: 120 LTR 122
           ++R
Sbjct: 214 MSR 216


>C0ZJZ9.1 C0ZJZ9_BREBN Putative uncharacterized protein
          Length = 182

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 1/125 (0%)

Query: 1   VYYTDPQQMELVSAKTDISYADAVEKYSEAYKSLQSSSNPD-QVPLWGKIELKSLKFTDG 59
           VYY+D   MEL   + +I++A+ +EKY +    L++   PD  VPLW   +  S+    G
Sbjct: 58  VYYSDNNVMELQKEEQEITFAEDIEKYKKTLALLETPVKPDVHVPLWRDFKYHSITIDKG 117

Query: 60  QIIMDIHKPDEAQLGAGGEAFAISALAQTLFQFEEVKSVEVLVDGEQVESLMGHVDLEHP 119
            + +D    ++  +G+ GE  A+ AL  T FQF EVK +  L DG++VE+LMGHVDL  P
Sbjct: 118 TLTIDADSKNKFNMGSSGETMALDALKNTFFQFSEVKEIVFLEDGKKVETLMGHVDLSEP 177

Query: 120 LTREN 124
           L R+N
Sbjct: 178 LKRDN 182


>B1DL76.1 B1DL76_9BACL Putative uncharacterized protein
          Length = 198

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 71/122 (58%)

Query: 1   VYYTDPQQMELVSAKTDISYADAVEKYSEAYKSLQSSSNPDQVPLWGKIELKSLKFTDGQ 60
           VYY+D +  ++VS    +  +   +   +   +L        V LW  I +KS+   D  
Sbjct: 75  VYYSDTELEKMVSKDIQVKSSSNEDLIKQVLDALHQDGPEGTVNLWKPIPIKSVTLKDNA 134

Query: 61  IIMDIHKPDEAQLGAGGEAFAISALAQTLFQFEEVKSVEVLVDGEQVESLMGHVDLEHPL 120
           + +DI  PD A+LGA GE   + +L QTLFQF+ V+S ++LVDG+ +ESLMGH DL+HP 
Sbjct: 135 VTIDIELPDTARLGAPGEQMLLDSLGQTLFQFDFVQSYDLLVDGKALESLMGHFDLDHPA 194

Query: 121 TR 122
            R
Sbjct: 195 VR 196


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 698,078,768
Number of extensions: 23659709
Number of successful extensions: 55190
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 55201
Number of HSP's successfully gapped: 12
Length of query: 127
Length of database: 3,060,696,203
Length adjustment: 92
Effective length of query: 35
Effective length of database: 2,193,962,823
Effective search space: 76788698805
Effective search space used: 76788698805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)