BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0543.0004.p (395 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K706.1 B3K706_9BACI S-layer domain protein 345 5e-93 B1DL75.1 B1DL75_9BACL S-layer domain protein 206 3e-51 Q7BGG0.1 Q7BGG0_ANETH Putative S-layer associated protein 112 4e-23 Q6T1X9.1 Q6T1X9_ANETH Putative S-layer associated protein 112 4e-23 B0TGX4.1 B0TGX4_HELMI Putative uncharacterized protein 107 2e-21 >B3K706.1 B3K706_9BACI S-layer domain protein Length = 909 Score = 345 bits (885), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 172/364 (47%), Positives = 241/364 (66%), Gaps = 5/364 (1%) Query: 8 KRSIHTYSSKAAAAILAGTMVLXXXXXXXXXXXXXXXXXXXXXXXXPTAAAGIFTDVKNG 67 + S H +S K +A++AG L P A +F+DV G Sbjct: 4 RHSKHVHSKKVVSAVMAG---LIAFGGGASIVSADEEAANATTANAPQTAVNVFSDVNAG 60 Query: 68 FWAEKHIYKLASQGIVVGNNGLFRPGDSVTQQEAVLMALRFMKLQGNVQSDSDVVFPTDF 127 +W EK+IY+LA+QGIV GNNG FRP D VTQQEAV MA+RF+ +Q + S + PT+ Sbjct: 61 YWGEKYIYQLAAQGIVTGNNGKFRPNDPVTQQEAVTMAIRFLSMQDQLSSGA-ATLPTNV 119 Query: 128 KVTNYYKPYVVLAFQQGLLDKAAEMAPDNLKTSWGERKASREWVAELLIRALGKTTEAAA 187 KV +Y+ YV LAFQQ LLDK E + K WG +KASREW+ E+L+R++G+T EA A Sbjct: 120 KVNDYFTKYVELAFQQNLLDKQKESGYTDEKVIWGAQKASREWITEVLVRSIGRTAEANA 179 Query: 188 VSGKPTGFADDAKVAANKRGYINAAVGLGLANGLDGNRFDPQGAVTRAQLATFFSRAEAH 247 K TGFAD+AK++ ++ GY+N AV LGLA G++GN+FDPQGAVTRAQLATFFSRA+A+ Sbjct: 180 AKNKATGFADNAKISPDRLGYVNVAVELGLAKGVNGNKFDPQGAVTRAQLATFFSRAQAY 239 Query: 248 NTLDYDNTVKGTISAMQDGKLTLFNNGSTSVFNVTYSTAYFTSTVDTRINFSDLKPYTKV 307 T +Y+N KG+I+++++GKL L+ +G + F + STAYF S + R+ FSD+ PYT+ Sbjct: 240 ITTNYENQYKGSIASIENGKLELYADGKLNSFKLDSSTAYFASDSEKRLQFSDINPYTQA 299 Query: 308 TVIGATYNAAYVEVTDPVQQVQTIEGVFAKVTP-GTIWLDSPTGYDQYSYDGSTAFVDVN 366 V+ AAYVE+TDP QQV+ + +A+++P IWLD+ + +++ SY+ ST F+D N Sbjct: 300 VVVANNGTAAYVEITDPAQQVERFDRTYARLSPNNVIWLDTGSTFEELSYEPSTVFLDQN 359 Query: 367 GAAI 370 G I Sbjct: 360 GIQI 363 >B1DL75.1 B1DL75_9BACL S-layer domain protein Length = 827 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/269 (43%), Positives = 162/269 (60%), Gaps = 7/269 (2%) Query: 69 WAEKHIYKLASQGIVVG---NNGL--FRPGDSVTQQEAVLMALRFMKLQGNVQSDSDVVF 123 WA+KH+ KLA QGI+ G ++G FRP SV+Q+EAV+MALRF L+G V D V + Sbjct: 49 WAQKHVSKLALQGIINGYKTSSGTTEFRPLKSVSQEEAVVMALRFAGLEGEVDPDGIVAY 108 Query: 124 PTDFKVTNYYKPYVVLAFQQGLLDKAAE--MAPDNLKTSWGERKASREWVAELLIRALGK 181 P FKV+NY KPY+++AF+ GLLD+ E A N K +WG A+REWV +LL++A+ K Sbjct: 109 PDSFKVSNYAKPYIIVAFKHGLLDQNDEYANAAANPKAAWGTTPATREWVTKLLVKAIDK 168 Query: 182 TTEAAAVSGKPTGFADDAKVAANKRGYINAAVGLGLANGLDGNRFDPQGAVTRAQLATFF 241 A +S + FAD ++ A GY+NAAV L L G+ +FDP+ V RA LAT F Sbjct: 169 KQLADDLSKTASTFADGNQITAKYLGYVNAAVSLDLVKGVSATKFDPKAPVNRASLATLF 228 Query: 242 SRAEAHNTLDYDNTVKGTISAMQDGKLTLFNNGSTSVFNVTYSTAYFTSTVDTRINFSDL 301 SRAE + Y V G ++A +TL++ G + + + +T Y+ + D I D+ Sbjct: 229 SRAENQYKVPYAGQVSGIVTAQTATSITLYSEGKETTYTLDSNTLYYAADSDNAIAAGDI 288 Query: 302 KPYTKVTVIGATYNAAYVEVTDPVQQVQT 330 K YT VT+IG + A YVE Q V+T Sbjct: 289 KLYTDVTLIGNSGKALYVESQGTEQHVKT 317 >Q7BGG0.1 Q7BGG0_ANETH Putative S-layer associated protein Length = 883 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 140/287 (48%), Gaps = 19/287 (6%) Query: 58 AGIFTDVKNGFWAEKHIYKLASQGIVVG-NNGLFRPGDSVTQQEAVLMALRFMKLQGNVQ 116 +G F DV WA ++I K+ + +V G N+G FRP +SVTQ +A+ M +R M L + Sbjct: 35 SGQFKDVSANHWASQYILKMGLRDVVAGYNDGTFRPDESVTQLQALAMVVRNMGLTEEAK 94 Query: 117 SDSDVVFPTDFKVTNYYKPYVVLAFQQGLLDKAAEMAPDNLKTSWGERKASREWVAELLI 176 P + V ++ K V LA +GL+ K E K + + ASR WVA+L++ Sbjct: 95 KYESTAIP--YSVPDWAKGSVALAISKGLI-KPTE------KNFYPDMPASRAWVAQLMV 145 Query: 177 RALGKTTEAAAVSGKPTGFADDAKVAANKRGYINAAVGLGLANGLD---GNRFDPQGAVT 233 R + K +E S T F D + + +GY++ AV L +G G F P AVT Sbjct: 146 RMIDKESEVGKASS--TLFTDGSSIPDWAKGYVDVAVANDLISGYKEGAGTAFKPNRAVT 203 Query: 234 RAQLATFFSRAEAHNTLDYDNTVKGTISAMQDGKLTLFNNGSTSVFN--VTYSTAYFTST 291 RA++ T S+ E ++ NT G + ++ LTL + + +T T ++ Sbjct: 204 RAEMVTMLSKGERFLKIESANTRIGYLQSVSGNTLTLTDESGKEQYRYTITSDTQFYNGN 263 Query: 292 VDTRINFSDLKPYTKVTVIGATYNAAYVEVTDPVQQVQTIEGVFAKV 338 V T ++L +++ VI A YVEV + Q+ + + V KV Sbjct: 264 VKT--TSANLGTDSQLLVISENGQARYVEVINFKQKSKYDKAVLEKV 308 >Q6T1X9.1 Q6T1X9_ANETH Putative S-layer associated protein Length = 883 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 140/287 (48%), Gaps = 19/287 (6%) Query: 58 AGIFTDVKNGFWAEKHIYKLASQGIVVG-NNGLFRPGDSVTQQEAVLMALRFMKLQGNVQ 116 +G F DV WA ++I K+ + +V G N+G FRP +SVTQ +A+ M +R M L + Sbjct: 35 SGQFKDVSANHWASQYILKMGLRDVVAGYNDGTFRPDESVTQLQALAMVVRNMGLTEEAK 94 Query: 117 SDSDVVFPTDFKVTNYYKPYVVLAFQQGLLDKAAEMAPDNLKTSWGERKASREWVAELLI 176 P + V ++ K V LA +GL+ K E K + + ASR WVA+L++ Sbjct: 95 KYESTAIP--YSVPDWAKGSVALAISKGLI-KPTE------KNFYPDMPASRAWVAQLMV 145 Query: 177 RALGKTTEAAAVSGKPTGFADDAKVAANKRGYINAAVGLGLANGLD---GNRFDPQGAVT 233 R + K +E S T F D + + +GY++ AV L +G G F P AVT Sbjct: 146 RMIDKESEVGKASS--TLFTDGSSIPDWAKGYVDVAVANDLISGYKEGAGTAFKPNRAVT 203 Query: 234 RAQLATFFSRAEAHNTLDYDNTVKGTISAMQDGKLTLFNNGSTSVFN--VTYSTAYFTST 291 RA++ T S+ E ++ NT G + ++ LTL + + +T T ++ Sbjct: 204 RAEMVTMLSKGERFLKIESANTRIGYLQSVSGNTLTLTDESGKEQYRYTITSDTQFYNGN 263 Query: 292 VDTRINFSDLKPYTKVTVIGATYNAAYVEVTDPVQQVQTIEGVFAKV 338 V T ++L +++ VI A YVEV + Q+ + + V KV Sbjct: 264 VKT--TSANLGTDSQLLVISENGQARYVEVINFKQKSKYDKAVLEKV 308 >B0TGX4.1 B0TGX4_HELMI Putative uncharacterized protein Length = 889 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 98/326 (30%), Positives = 142/326 (43%), Gaps = 19/326 (5%) Query: 56 AAAGIFTDVKNGFWAEKHIYKLASQGIVVGN-NGLFRPGDSVTQQEAVLMALRFMKLQGN 114 AA F DV + I KL++QG + G +G F P D V Q EA++M RF ++ Sbjct: 38 AAVRQFGDVSTVMPEYRPIMKLSAQGTIKGRGDGNFGPSDPVKQLEALVMVQRFFGMEAT 97 Query: 115 VQSDSDVVFPTDFK-----VTNYYKPYVVLAFQQGLLDKAAEMAPDNLKTSWGERKASRE 169 + + + P K V + K Y+V A Q LLD A E P W + A+R Sbjct: 98 ATAAASRLTPDMEKKFGGNVPAWGKGYLVTAVNQNLLD-ANEYFP------W-HQGATRA 149 Query: 170 WVAELLIRALGKTTEAAAVSGKPTGFADDAKVAANKRGYINAAVGLGLANGLDGNRFDPQ 229 WVA LL+R L K EA + P FAD + A+ RG+I A LGL G + FDP Sbjct: 150 WVARLLVRLLNKEQEAQSRMNAPLTFADATLIPASLRGHIAVATDLGLIRGRENGCFDPN 209 Query: 230 GAVTRAQLATFFSRAEAHNTLDYDNTVKGTISAMQDGKLTLFNNGSTSVFNVTYSTAYFT 289 VTR ++A F RAE + T + +D L++ + + ++T Sbjct: 210 SIVTRGEMAIFLDRAERKMDRLPPGIDEATFISGRDAILSVLDE-ENRLSSLTLDANARI 268 Query: 290 STVDTRINFSDLKPYTKVTVIGATYNAAYVEVTDPV-QQVQTIEGVFAKVTP--GTIWLD 346 + + SDL P K+ I Y+EV Q+ + G P G + L Sbjct: 269 FGTERAVALSDLNPQDKIRYIQDGDKVVYLEVVQGSGQKANVLRGEVIASLPEQGLLTLK 328 Query: 347 SPTGYD-QYSYDGSTAFVDVNGAAIS 371 G YS S + +D+ G +S Sbjct: 329 DDAGKPFTYSLATSVSVIDLAGQMLS 354 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.130 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,045,917,540 Number of extensions: 78158642 Number of successful extensions: 215692 Number of sequences better than 1.0e-05: 199 Number of HSP's gapped: 215926 Number of HSP's successfully gapped: 199 Length of query: 395 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 257 Effective length of database: 1,760,596,133 Effective search space: 452473206181 Effective search space used: 452473206181 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)